A necklace model for vesicles simulations in 2D

The aim of this paper is to propose a new numerical model to simulate 2D vesicles interacting with a Newtonian fluid. The inextensible membrane is modeled by a chain of circular rigid particles, which are maintained in cohesion by using two different types of forces. First, a spring force is imposed between neighboring particles in the chain. Second, in order to model the bending of the membrane, each triplet of successive particles is submitted to an angular force. Numerical simulations of vesicles in shear flow have been run using FEM and the FreeFem++ software. Exploring different ratios of inner and outer viscosities, we recover the well‐known ‘tank‐treading’ and ‘tumbling’ motions predicted by a theory and experiments. Moreover, for the first time, 2D simulations of the ‘vacillating‐breathing’ regime without special ingredient such as thermal fluctuations are recovered. Copyright © 2014 John Wiley & Sons, Ltd.     

Solvent and structural effects in tautomeric 3-cyano-4-(substituted phenyl)-6-phenyl-2(1H)-pyridones: experimental and quantum chemical study

The tautomeric equilibria between 2-pyridone and 2-hydroxypyridine forms of methoxy, chloro, and nitro derivatives of 3-cyano-4-(2-, 3-, and 4-substituted phenyl)-6-phenyl-2(1H)-pyridones were evaluated from UV/Vis spectral data. Linear solvation energy relationships of Kamlet–Taft and Catalán-rationalized solvent have influence on tautomeric equilibria. Transmission of substituent effect was analyzed by the Hammett equation. Quantum chemical calculations were performed by density functional theory (B3LYP). The experimental data were interpreted with the aid of time-dependent density functional method. Electron density distribution was analyzed by Bader’s analysis. It was found that substituents of different electronic properties change the extent of conjugation, and affect intramolecular charge transfer character. Theoretical calculations and experimental results gave insight into the influence of the molecular conformation on the transmission of substituent effects, as well as on contribution of different solvent–solute interactions.     

Direct asymmetric intermolecular aldol reactions catalyzed by amino acids and small peptides

In nature there are at least nineteen different acyclic amino acids that act as the building blocks of polypeptides and proteins with different functions. Here we report that alpha-amino acids, beta-amino acids, and chiral amines containing primary amine functions catalyze direct asymmetric intermolecular aldol reactions with high enantioselectivities. Moreover, the amino acids can be combined into highly modular natural and unusual small peptides that also catalyze direct asymmetric intermolecular aldol reactions with high stereoselectivities, to furnish the corresponding aldol products with up to >99 % ee. Simple amino acids and small peptides can thus catalyze asymmetric aldol reactions with stereoselectivities matching those of natural enzymes that have evolved over billions of years. A small amount of water accelerates the asymmetric aldol reactions catalyzed by amino acids and small peptides, and also increases their stereoselectivities. Notably, small peptides and amino acid tetrazoles were able to catalyze direct asymmetric aldol reactions with high enantioselectivities in water, while the parent amino acids, in stark contrast, furnished nearly racemic products. These results suggest that the prebiotic oligomerization of amino acids to peptides may plausibly have been a link in the evolution of the homochirality of sugars. The mechanism and stereochemistry of the reactions are also discussed.     

New insights on anion recognition by isomers of a calix pyrrole derivative

Two isomeric structures of meso-tetramethyltetrakis(3-hydroxyphenyl)calix[4]pyrrole, 4-alphaalpha betabeta and 4-alphabeta alphabeta, have been isolated and characterized by 1H NMR in different solvents (CD3CN, CD3OD, and DMSO-d6) at 298 K. Standard Gibbs energies of solution derived from solubility data in various solvents were used to calculate the transfer Gibbs energy, delta(t)G(o), of these ligands using acetonitrile as the reference solvent. These results are consistent with the 1H NMR studies in different media that show chemical shift changes observed in the resonances of the NH and the OH protons of these ligands. Solvate formation was observed when these isomers were exposed to saturated atmosphere of N,N-dimethylformamide, dimethyl sulfoxide and propylene carbonate. Anion interaction involving 4-alphaalpha betabeta and 4-alphabeta alphabeta was investigated by 1H NMR in CD3CN while the complex composition was assessed through conductance measurements. Significant differences are observed in the affinity of these ligands for anions as well as in the composition of the fluoride complexes. Thus 4-alphaalpha betabeta shows selectivity for H2PO4(-) in acetonitrile while its isomer 4-alphabeta alphabeta is selective for the fluoride anion. Again the complex composition is altered for the fluoride anion when complexed with 4-alphaalpha betabeta in acetonitrile (1:1 complex) relative to 4-alphabeta alphabeta in the same solvent. The latter isomer shows an enhanced hosting ability for this anion. Thus two anions are taken up per unit of ligand. The thermodynamics of complexation of H2PO4(-) and these ligands in acetonitrile is discussed, and the results are compared with those involving calix[4]pyrrole and this anion in this solvent. It is shown that the isomers interact with two H2PO4(-) anions while one calix[4]pyrrole unit interacts with this anion. This paper demonstrates for the first time that the enthalpy parameter may be a suitable reporter of the number of hydrogen bonds formed when calix[4]pyrrole and its derivatives interact with the dihydrogen phosphate anion in acetonitrile. In moving from acetonitrile to N,N-dimethylformamide, 4-alphaalpha betabeta is unable to enter complexation with most anions, except fluoride, with which the formation of a 1:2 (ligand:anion) complex is demonstrated. The rather versatile behavior of these receptors for anions is explained on the basis of 1H NMR evidence and solvation effects. These investigations highlight the importance of the medium effect on the stability of the complex and reflect the inherent nature of the solvent and its highly significant involvement in the complexation process.     

Synthesis and catalytic properties of novel ruthenium N-heterocyclic-carbene complexes

The reaction of [RuCl₂(p-cymene)]₂ with 1,3-dialkylimidazolinium salts 1a–f in the presence of a small excess of cesium carbonate yields chelated η⁶-arene, η¹-carbene ruthenium complexes 2a–f. All synthesised compounds were characterized by elemental analysis, NMR spectroscopy. The catalytic activity of RuCl₂(η⁶-arene, η¹-imidazolinylidene) complexes 2a–f was evaluated in the direct arylation of 2-phenylpyridine with chlorobenzene derivatives.     

Acutaxylines A and B, two novel triterpenes from Dysoxylum acutangulum

Two novel triterpenes, acutaxylines A (1) and B (2) consisting of a cyclopentenone side chain at C-17 and an oxepan-2-ol, were isolated from the leaves of Dysoxylum acutangulum. The relative stereochemistry of 1 and 2 was determined by NOESY correlations. Acutaxyline B showed moderate cytotoxicity against human blood premyelocytic leukemia cells.     

Adsorption Study of Immunoglobulin G Subclasses from Different Species by Pseudobioaffinity Separation on Histidyl–Bisoxirane–Sepharose

Adsorption chromatography is increasingly used for protein separations and biomedical applications. Therapeutic molecules such as antibodies, cytokines, therapeutic DNA, and plasma proteins must be purified before characterization and utilization. Use of immunoglobulins as immunodiagnostic and therapeutic tools has initiated many attempts to develop new adsorbents for their separation. Protein A and protein G are the affinity ligands most widely used for separation of immunoglobulins. These proteins are reliable, and have good selectivity and specificity, but are very expensive. Much attention has therefore been devoted to developing alternative methods for separation of immunoglobulins. Pseudobiospecific ligands, for example metal ions and amino acids, can be used for separation of a wide range of biological molecules. In this study, IgG₁, IgG₂, and IgG₃, three subclasses of human IgG, were separated from human serum using the amino acid histidine grafted on to bisoxirane-activated Sepharose, as pseudobiospecific adsorbent. Adsorption of IgG from different animal species on the same chromatographic adsorbent was also tested. The high recovery and purification on histidyl–bisoxirane–Sepharose gel of IgG from all the sources tested compared well with results obtained by use of protein A–Sepharose gel.     

Preparation, characterization and thermal studies of some transition metal ternary complexes

Ternary complexes of Co(II), Ni(II), Cu(II) and Zn(II) with nitrilotriacetic acid as a primary ligand and glycine as secondary ligand were prepared in slightly acid medium. Their molecular masses were determined by acid-base titration against standard potassium hydroxide solution. Their molecular structures were found to be [M (HNTA)(glyH)(2H₂O)]. Thermogravimetric analysis confirmed this structure and that the water present is coordinated to the central metal atom. UV-Vis spectra showed that the complexes have octahedral symmetry. IR spectra suggested the presence of intermolecular hydrogen bonding. This phenomenon was supported by mass spectra. The ionization constants of these complexes, as diprotic acids, were determined.