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51.
Previously a new universal lambda-integration path and associated methodology was developed for the calculation of "exact" surface and interfacial free energies of solids. Such a method is in principle applicable to any intermolecular potential function, including those based on ab initio methods, but in previous work the method was only tested using a relatively simple embedded atom method iron potential. In this present work we apply the new methodology to the more sophisticated and more accurate modified embedded atom method (MEAM) iron potential, where application of other free- energy methods would be extremely difficult due to the complex many-body nature of the potential. We demonstrate that the new technique simplifies the process of obtaining "exact" surface free energies by calculating the complete set of these properties for the low index surface faces of bcc and fcc solid iron structures. By combining these data with further calculations of liquid surface tensions we obtain the first complete set of exact surface free energies for the solid and liquid phases of a realistic MEAM model system. We compare these predictions to various experimental and theoretical results. 相似文献
52.
Luque Ruiz I García GC Gómez-Nieto MA 《Journal of chemical information and computer sciences》2004,44(6):1903-1911
The increase in the size and complexity of chemical databases necessitates the proposal and development of efficient methods of classification and recovery of information, which supposes proposal of a model of classification of database records and the use of a compatible model of screening for inspection of clusters and recovery of the molecules that satisfy the search criterion. The cycle graphs model based on consideration of all the cycles and chains (and equivalent cycles and chains) present in the molecular structure has been proven appropriate for classification of chemical databases, giving rise to a generation of different classification levels depending on the structural elements (cycles and chains) that are considered. In this paper we propose a screening model, compatible with the cycle graphs model, based on a hierarchy of levels of abstraction. The set of molecules that satisfies a screening model (or selection criterion) diminishes as we advance in the hierarchy of levels of the model, which allows filtering of records and, therefore, an increase in the efficiency of the screening process. In the following work of this series we describe and validate the screening tool developed. 相似文献
53.
Lisa A. Liotta Irene Medina Jennifer L. Robinson Po-Shen Pan Jennifer V.C. Johnston Fiona A. Curtis Shelli R. McAlpine 《Tetrahedron letters》2004,45(46):8447-8450
Described are the syntheses of 15 macrocyclic peptides designed to trap Holliday junctions (HJs) in bacteria during site-specific and homologous recombination. This leads to inhibiting bacterial growth. These second generation macrocycles were based on the C-2 symmetrical HJ. They were synthesized using a strategy that permits elucidation of the amino acid role in binding HJs. The syntheses of these macrocycles are an important step in the development of a new class of antibiotics. 相似文献
54.
55.
A recently developed technique in sum frequency generation spectroscopy, polarization angle null (or PAN-SFG), is applied to two orientations of the prism face of hexagonal ice. It is found that the vibrational modes of the surface are similar in different faces. As in the basal face, the prism face of ice contains five dominant resonances: 3096, 3146, 3205, 3253, and 3386 cm(-1). On the basal face, the reddest resonance occurs at 3098 cm(-1); within the bandwidth, the same as the prism face. On both the prism and basal faces, this mode contains a significant quadrupole component and is assigned to the bilayer stitching hydrogen bonds. The bluest of the resonances, 3386 cm(-1), occurs slightly blue-shifted at 3393 cm(-1) in the basal face. The prism face has two orientations: one with the optic or c axis in the input plane (the plane formed by the surface normal and the interrogating beam propagation) and one with the c axis perpendicular to the input plane. The 3386 cm(-1) mode has significant intensity only with the c axis in the input plane. On the basis of these orientation characteristics, the 3386 cm(-1) mode is assigned to double-donor molecules in either the top half bilayer or in the lower half bilayer. On the basis of frequency considerations, it is assigned to double-donor molecules in the top half bilayer. These are water molecules containing a nonbonded lone pair. In addition to identification of the components of the broad hydrogen-bonded region, PAN-SFG measures the tangential vs longitudinal content of the vibrational modes. In accord with previous suggestions, the lower frequency modes are predominantly tangential, whereas the higher frequency modes are mainly longitudinal. On the prism face, the 3386 cm(-1) mode is entirely longitudinal. 相似文献
56.
Mena ML Moreno-Gordaliza E Moraleja I Cañas B Gómez-Gómez MM 《Journal of chromatography. A》2011,1218(9):1281-1290
In this work a 2D electrophoretic separation procedure able to maintain the integrity of platinum-protein bonds has been developed. The method is based on the use of sequential OFFGEL isoelectric focussing (IEF) and PAGE. A systematic study of the reagents used for PAGE, for OFFGEL-IEF separation, and post-separation treatment of gels (such as enzymatic digestion and sample preparation for MS analysis) was tackled regarding their suitability for the identification of platinum binding proteins using standard proteins incubated with cisplatin. The distribution of platinum in high and low molecular weight fractions (separated by cut-off filters) was determined by ICP-MS, which allows evaluating platinum-protein bond stability under the conditions studied. SDS-PAGE in the absence of β-mercaptoethanol or dithiotreitol preserved the platinum-protein bonds. In addition, neither the influence of the electric field during the electrophoretic separation, nor the processes of fixing, staining and destaining of proteins in the gel did result in the loss of platinum from platinum binding proteins. SDS-PAGE under non-reducing conditions provides separation of platinum-binding proteins in very narrow bands with quantitative recoveries. Different amounts of platinum-bound proteins covering the range 0.3-2.0 μg were separated and mineralised for platinum determination, showing good platinum linearity. Limits of detection for a mixture of five standard proteins incubated with cisplatin were between the range of 2.4 and 13.9 pg of platinum, which were satisfactory for their application to biological samples. Regarding OFFGEL-IEF, a denaturing solution without thiourea and without dithiotreitol is recommended. The suitability of the OFFGEL-IEF for the separation of platinum binding proteins of a kidney cytosol was demonstrated. 相似文献
57.
Maffeo D Velkov Z Misiakos K Mergia K Paulidou A Zavali M Mavridis IM Yannakopoulou K 《Journal of colloid and interface science》2011,358(2):369-375
The monitoring of the antibacterial agent triclosan binding at nanomolar concentration from an aqueous solution by employing a well-packed monolayer with a predetermined single orientation made of specifically synthesized 2,3-dimethyl-6-(undec-10-enamide)-6-deoxy-β-cyclodextrin (DMBUA) on a silicon wafer (Si/SiO(2)) coated with a novolac resin is reported. A white light reflectance spectroscopy (WLRS) setup was used for the real-time monitoring of the DMBUA deposition and triclosan binding processes. Film thicknesses obtained by WLRS were in very good agreement with the ones measured by X-ray reflectivity (XRR) experiments. Triclosan binds strongly to the DMBUA monolayer (logK(assoc)=6.68). NMR studies in aqueous solution indicated that the chlorophenolyl ring rather than the dichlorophenyl ring is preferentially inserted into DMBUA cups. The current detecting system that requires no tedious surface chemistry, no thiolated cyclodextrins, no gold surfaces, and no expensive equipment may be useful in capturing small molecules and may permit various applications, e.g., preparation of antimicrobial surfaces. 相似文献
58.
Arrigo Forni Irene Moretti Adele Mucci Fabio Prati Luisa Schenetti 《Chemistry of Heterocyclic Compounds》1995,31(9):1071-1078
A confrgurational and conformational study of NH, N-acetyl- and N-sulfonylaziridine carboxylates is performed by1H ,13C,17O, and15N NMR spectroscopy. The presence of acetyl and su fonyl groups on the ring nitrogen atom seems to reduce greatly the configurational stability at nitrogen.Published in Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1226–1234, September, 1995. 相似文献
59.
Rasmussen M Ritzmann RE Lee I Pollack AJ Scherson D 《Journal of the American Chemical Society》2012,134(3):1458-1460
A biofuel cell incorporating a bienzymatic trehalase|glucose oxidase trehalose anode and a bilirubin oxidase dioxygen cathode using Os complexes grafted to a polymeric backbone as electron relays was designed and constructed. The specific power densities of the biofuel cell implanted in a female Blaberus discoidalis through incisions into its abdomen yielded maximum values of ca. 55 μW/cm(2) at 0.2 V that decreased by only ca. 5% after ca. 2.5 h of operation. 相似文献
60.
Graf C Gao Q Schütz I Noufele CN Ruan W Posselt U Korotianskiy E Nordmeyer D Rancan F Hadam S Vogt A Lademann J Haucke V Rühl E 《Langmuir : the ACS journal of surfaces and colloids》2012,28(20):7598-7613
The influence of the surface functionalization of silica particles on their colloidal stability in physiological media is studied and correlated with their uptake in cells. The surface of 55 ± 2 nm diameter silica particles is functionalized by amino acids or amino- or poly(ethylene glycol) (PEG)-terminated alkoxysilanes to adjust the zeta potential from highly negative to positive values in ethanol. A transfer of the particles into water, physiological buffers, and cell culture media reduces the absolute value of the zeta potential and changes the colloidal stability. Particles stabilized by L-arginine, L-lysine, and amino silanes with short alkyl chains are only moderately stable in water and partially in PBS or TRIS buffer, but aggregate in cell culture media. Nonfunctionalized, N-(6-aminohexyl)-3-aminopropyltrimethoxy silane (AHAPS), and PEG-functionalized particles are stable in all media under study. The high colloidal stability of positively charged AHAPS-functionalized particles scales with the ionic strength of the media, indicating a mainly electrostatical stabilization. PEG-functionalized particles show, independently from the ionic strength, no or only minor aggregation due to additional steric stabilization. AHAPS stabilized particles are readily taken up by HeLa cells, likely as the positive zeta potential enhances the association with the negatively charged cell membrane. Positively charged particles stabilized by short alkyl chain aminosilanes adsorb on the cell membrane, but are weakly taken up, since aggregation inhibits their transport. Nonfunctionalized particles are barely taken up and PEG-stabilized particles are not taken up at all into HeLa cells, despite their high colloidal stability. The results indicate that a high colloidal stability of nanoparticles combined with an initial charge-driven adsorption on the cell membrane is essential for efficient cellular uptake. 相似文献