CXCR4 chemokine receptor antagonists: nickel(ii) complexes of configurationally restricted macrocycles

Tetraazamacrocyclic complexes of transition metals provide useful units for incorporating multiple coordination interactions into a single protein binding molecule. They can be designed with available sites for protein interactions via donor atom-containing amino acid side chains or labile ligands, such as H(2)O, allowing facile exchange. Three configurationally restricted nickel(ii) cyclam complexes with either one or two macrocyclic rings were synthesised and their ability to abrogate the CXCR4 chemokine receptor signalling process was assessed (IC(50) = 8320, 194 and 14 nM). Analogues were characterised crystallographically to determine the geometric parameters of the acetate binding as a model for aspartate. The most active nickel(ii) compound was tested in several anti-HIV assays against representative viral strains showing highly potent EC(50) values down to 13 nM against CXCR4 using viruses, with no observed cytotoxicity (CC(50) > 125 μM).     

Study of the chemical mechanism involved in the formation of tungstite in benzyl alcohol by the advanced QEXAFS technique

Insight into the complex chemical mechanism for the formation of tungstite nanoparticles obtained by the reaction of tungsten hexachloride with benzyl alcohol is presented herein. The organic and inorganic species involved in the formation of the nanoparticles were studied by time-dependent gas chromatography and X-ray diffraction as well as by time-resolved in situ X-ray absorption near-edge structure and extended X-ray absorption fine structure spectroscopy. Principal component analysis revealed two intermediates, which were identified as WCl(4) and WOCl(4) by using linear combination analysis. Quick-scanning extended X-ray absorption fine structure spectroscopy enabled the time-dependent evolution of the starting compound, the intermediates and the product to be monitored over the full reaction period. The reaction starts with fast chlorine substitution and partial reduction during the dissolution of the tungsten hexachloride in benzyl alcohol followed by the generation of intermediates with W=O double bonds and finally the construction of the W-O-W network of the tungstite structure.     

Polyimides Containing Azobenzene Side Units: Properties and Correlation with Conformational Parameters

Two series of aromatic polyimides differing by the bridging group between imide rings, polymers a, b, and c, having C?O linkages and polymers d, e, and f, having C(CF₃)₂ groups, have been obtained by polycondensation reaction of aromatic dianhydrides with aromatic diamines containing substituted azobenzene groups. These polymers with good solubility in polar amidic solvents, were able to form transparent flexible films and showed high thermal stability. Conformational parameters of the polymers were calculated by the Monte Carlo method with allowance for hindered rotation. Several physical properties of these polymers, such as solubility, glass transition temperature (T_g), and initial decomposition temperature (T_onset) were measured and discussed in relation to the volume factor of the macromolecular chains. The volume factor is equal to ratio of the Van der Waals volume of the pendent group to the Van der Waals volume of the repeating unit of the main chain.     

Comparative study of polyimides containing different flexible linkages

Two series of polyimides were synthesized based on different aromatic dianhydrides containing various flexible linkages and two aromatic diamines containing ether and nitrile groups. The structure of the polymers was confirmed by FTIR and ¹H NMR spectroscopy. The correlation between some physical properties, such as solubility, thermal stability and glass transition temperature, and conformational rigidity parameters, such as Kuhn segment, characteristic ratio and rigidity parameter p, was studied.     

Coating of carbon nanotubes on flexible substrate and its adhesion study

The primary goal of this project was to develop a flexible transparent conductor with 100 Ω/sq and 90% transmittance in the wavelength range of 400-700 nm on a flexible substrate. The best result achieved so far was 110 Ω/sq at 88% transmittance using purified single-walled carbon nanotubes (SWNTs) coated on a polyethylene naphthalate (PEN) substrate. The secondary goal was to simplify the overall coating procedure; we successfully reduced the process from five (prior art method) to three steps utilizing a sonication method. We also found that the use of metallic SWNTs significantly improved the conductivity and transmittance compared with the use of mixed SWNTs, i.e., unseparated SWNTs. Furthermore, a possible adhesion mechanism between SWNTs and the surface of PEN was studied; we concluded that a π-π stacking effect and a hydrophobic interaction are the major contributing factors for SWNTs to adhere to the surface of the substrate.     

Hyperpolarization of Pyridyl Fentalogues by Signal Amplification By Reversible Exchange (SABRE)

Fentanyl, also known as ‘jackpot’, is a synthetic opiate that is 50–100 times more potent than morphine. Clandestine laboratories produce analogues of fentanyl, known as fentalogues to circumvent legislation regarding its production. Three pyridyl fentalogues were synthesized and then hyperpolarized by signal amplification by reversible exchange (SABRE) to appraise the forensic potential of the technique. A maximum enhancement of -168-fold at 1.4 T was recorded for the ortho pyridyl ¹H nuclei. Studies of the activation parameters for the three fentalogues revealed that the ratio of ligand loss trans to hydride and hydride loss in the complex [Ir(IMes)(L)₃(H)₂]⁺ (IMes=1,3-bis(2,4,6-trimethylphenyl)imidazole-2-ylidene) ranged from 0.52 to 1.83. The fentalogue possessing the ratio closest to unity produced the largest enhancement subsequent to performing SABRE at earth's magnetic field. It was possible to hyperpolarize a pyridyl fentalogue selectively from a matrix that consisted largely of heroin (97 : 3 heroin:fentalogue) to validate the use of SABRE as a forensic tool.     

Upscaling of the Coupling of Hydromechanical and Thermal Processes in a Quasi-static Poroelastic Medium

We undertake a formal derivation of a linear poro-thermo-elastic system within the framework of quasi-static deformation. This work is based upon the well-known derivation of the quasi-static poroelastic equations (also known as the Biot consolidation model) by homogenization of the fluid-structure interaction at the microscale. We now include energy, which is coupled to the fluid-structure model by using linear thermoelasticity, with the full system transformed to a Lagrangian coordinate system. The resulting upscaled system is similar to the linear poroelastic equations, but with an added conservation of energy equation, fully coupled to the momentum and mass conservation equations. In the end, we obtain a system of equations on the macroscale accounting for the effects of mechanical deformation, heat transfer, and fluid flow within a fully saturated porous material, wherein the coefficients can be explicitly defined in terms of the microstructure of the material. For the heat transfer we consider two different scaling regimes, one where the Péclet number is small, and another where it is unity. We also establish the symmetry and positivity for the homogenized coefficients.     

Finite-Volume Discretisations for Flow in Fractured Porous Media

Over the last decades, finite-volume discretisations for flow in porous media have been extended to handle situations where fractures dominate the flow. Successful discretisations have been based on the discrete fracture-matrix models to yield mass conservative methods capable of explicitly incorporating the impact of fractures and their geometry. When combined with a hybrid-dimensional formulation, two central concerns are the restrictions arising from small cell sizes at fracture intersections and the coupling between fractures and matrix. Focusing on these aspects, we demonstrate how finite-volume methods can be efficiently extended to handle fractures, providing generalisations of previous work. We address the finite-volume methods applying a general hierarchical formulation, facilitating implementation with extensive code reuse and providing a natural framework for coupling of different subdomains. Furthermore, we demonstrate how a Schur complement technique may be used to obtain a robust and versatile method for fracture intersection cell elimination. We investigate the accuracy of the proposed elimination method through a series of numerical simulations in 3D and 2D. The simulations, performed on fractured domains containing permeability heterogeneity and anisotropy, also demonstrate the flexibility of the hierarchical framework.     

Measurement of pharyngeal sensory cortical processing: technique and physiologic implications

Background  

Dysphagia is a major complication of different diseases affecting both the central and peripheral nervous system. Pharyngeal sensory impairment is one of the main features of neurogenic dysphagia. Therefore an objective technique to examine the cortical processing of pharyngeal sensory input would be a helpful diagnostic tool in this context. We developed a simple paradigm to perform pneumatic stimulation to both sides of the pharyngeal wall. Whole-head MEG was employed to study changes in cortical activation during this pharyngeal stimulation in nine healthy subjects. Data were analyzed by means of synthetic aperture magnetometry (SAM) and the group analysis of individual SAM data was performed using a permutation test.     

Investigation of Structural and Luminescent Properties of Sol-Gel-Derived Cr‑Substituted Mg3Al1−xCrx Layered Double Hydroxides

In the present work, Cr-substituted Mg₃Al_1−xCr_x layered double hydroxides (LDHs) were synthesised through the phase conversion of sol-gel-derived mixed-metal oxides in an aqueous medium. The chromium substitution level in the range of 1 to 25 mol% was investigated. It was demonstrated that all synthesised specimens were single-phase LDHs. The results of elemental analysis confirmed that the suggested synthetic sol-gel chemistry approach is suitable for the preparation of LDHs with a highly controllable chemical composition. The surface microstructure of sol-gel-derived Mg₃Al_1−xCr_x LDHs does not depend on the chromium substitution level. The formation of plate-like agglomerated particles, which consist of hexagonally shaped nanocrystallites varying in size from approximately 200 to 300 nm, was observed. Optical properties of the synthesised Mg₃Al_1−xCr_x LDHs were investigated by means of photoluminescence. All Cr-containing powders exhibited characteristic emission in the red region of the visible spectrum. The strongest emission was observed for the sample doped with 5 mol% Cr³⁺ ions. However, the emission intensity of samples doped with 1–10 mol% Cr³⁺ ions was relatively similar. A further increase in the Cr³⁺ ion concentration to 25 mol% resulted in severe concentration quenching.