Luminescent proteins from Aequorea victoria: applications in drug discovery and in high throughput analysis

Recent progress in generating a vast number of drug targets through genomics and large compound libraries through combinatorial chemistry have stimulated advancements in drug discovery through the development of new high throughput screening (HTS) methods. Automation and HTS techniques are also highly desired in fields such as clinical diagnostics. Luminescence-based assays have emerged as an alternative to radiolabel-based assays in HTS as they approach the sensitivity of radioactive detection along with ease of operation, which makes them amenable to miniaturization. Luminescent proteins provide the advantage of reduced reagent and operating costs because they can be produced in unlimited amounts through the use of genetic engineering tools. In that regard, the use of two naturally occurring and recombinantly produced luminescent proteins from the jellyfish Aequorea victoria, namely, aequorin and the green fluorescent protein (GFP), has attracted attention in a number of analytical applications in diverse research areas. Aequorin is naturally bioluminescent and has therefore, virtually no associated background signal, which allows its detection down to attomole levels. GFP has become the reporter of choice in a variety of applications given that it is an autofluorescent protein that does not require addition of any co-factors for fluorescence emission. Furthermore, the generation of various mutants of GFP with differing luminescent and spectral properties has spurred additional interest in this protein. In this review, we focus on the use of aequorin and GFP in the development of highly sensitive assays that find applications in drug discovery and in high throughput analysis.     

Multi-functional coordination crosslinks in poly(vinylamine) complexes with cobalt chloride

Poly(vinylamme) complexes with cobalt chloride hexahydrate exhibit the largest glass transition temperature enhancements that have been measured in this laboratory. T_g increases from 56°C in the undiluted polymer to 193°C when the molar concentration of cobalt is only 3%, based on the moles of polymeric repeat units. This translates to a 45°C enhancement in T_g per mol% cobalt. Higher glass transition temperatures have been measured for other polymeric complexes with d-block salts, but this study reports the largest ΔT_g=T_g(complex)-T_g(undiluted polymer) when transition-metal catalyzed chemical crosslinking reactions do not occur. A plausible explanation for this effect is based on the fact that cobalt chloride hexahydrate maintains pseudo-octahedral symmetry in the undiluted crystalline state and in an amorphous glassy complex with the polymer. The lone pair on nitrogen in the amino sidegroup is a strong base and, most likely, displaces all four waters of hydration that coordinate directly to the metal center. In fact, estimates of the ligand field splitting and the ligand field stabilization energy for octahedral cobalt complexes that contain methyl amine (CH₃NH₂) model ligands suggest that five or six amino sidegroups from several different chains might coordinate to each metal center, drastically reducing the mobility of the polymer. Both chloride anions remain near each divalent Co²⁺ center, but either one or two Cl⁻ might not reside in the first-shell coordination sphere of the transition metal. This bonding picture suggests that octahedral cobalt acts as a multi-functional bridge between five or six amino sidegroups. Empirical ligand field stabilization calculations support the concept that octahedral Co²⁺ is a multi-functional coordination crosslinking agent, and the inorganic literature provides experimental verification that similar small-molecule complexes (i.e., [Co(NH₃)₆]²⁺) exist. It is proposed that the onset of T_g occurs when sufficient thermal energy is supplied to remove either x or (x-1) amino sidegroup ligands from the coordination sphere of cobalt, where x is either 5 or 6. This is an endothermic process based on bond energies, as well as calculations which focus on the relative energies of the metal d-electrons.     

Changes in 13C/12C of oil palm leaves to understand carbon use during their passage from heterotrophy to autotrophy

The carbon isotope composition of leaf bulk organic matter was determined on the tropical tree Elaeis guineensis Jacq. (oil palm) in North Sumatra (Indonesia) to get a better understanding of the changes in carbon metabolism during the passage from heterotrophy to autotrophy of the leaves. Leaf soluble sugar (sucrose, glucose and fructose) contents, stomatal conductance and dark respiration, as well as leaf chlorophyll and nitrogen contents, were also investigated. Different growing stages were sampled from leaf rank ?6 to rank 57. The mean values for the δ¹³C of bulk organic matter were ?29.01 ± 0.9‰ for the leaflets during the autotrophic stage, ?27.87 ± 1.08‰ for the petioles and ?28.17 ± 1.09‰ for the rachises, which are in the range of expected values for a C₃ plant. The differences in δ¹³C among leaf ranks clearly revealed the changes in the origin of the carbon source used for leaf growth. Leaves were ¹³C‐enriched at ranks below zero (around ?27‰). During this period, the ‘spear’ leaves were completely heterotrophic and reserves from storage organs were mobilised for the growth of these young emerging leaves. ¹³C‐depletion was then observed when the leaf was expanding at rank 1, and there was a continuous decrease during the progressive passage from heterotrophy until reaching full autotrophy. Thereafter, the δ¹³C remained more or less constant at around ?29.5‰. Changes in sugar content and in δ¹³C related to leaf ranks showed an interesting similarity of the passage from heterotrophy to autotrophy of oil palm leaves to the budburst of some temperate trees or seed germination reported in the literature. Copyright © 2009 John Wiley & Sons, Ltd.     

Fixed-bed study for adsorptive removal of furfural by activated carbon

In our previous study [A.K. Sahu, V.C. Srivastava, I.D. Mall, D.H. Latye, Sep. Sci. Technol. 43 (5) (2008) 1239], commercial grade activated carbon (ACC) was used for adsorptive removal of furfural from aqueous solution using batch studies. In the present study, continuous fixed-bed adsorption was carried out in ACC packed bed for the removal of furfural from aqueous solution. The effects of important factors namely bed height (Z = 15–60 cm), influent concentration of furfural (C_o = 50–200 mg/l), the flow rate (Q = 0.02–0.04 l/min) and column diameter (D = 2–4 cm) were studied. Capacity of the bed to adsorb furfural was found to increase with an increase in the value of Z, C_o and D; and with decrease in the value of Q. Adams–Bohart, Bed-Depth Service-Time, Thomas, Yoon–Nelson, Clark and Wolborska models were applied to the experimental data for the prediction of the breakthrough point, and to determine the characteristic parameters of the column. Error analysis showed that the Yoon–Nelson model best described the experimental breakthrough curve, while Wolborska model showed good prediction of breakthrough curve for the relative concentration region up to 0.5.     

Application of Lipopeptide Biosurfactant Isolated from a Halophile: Bacillus tequilensis CH for Inhibition of Biofilm

Biosurfactants are amphiphilic molecules having hydrophobic and hydrophilic moieties produced by various microorganisms. These molecules trigger the reduction of surface tension or interfacial tension in liquids. A biosurfactant-producing halophile was isolated from Lake Chilika, a brackish water lake of Odisha, India (19°41′39″N, 85°18′24″E). The halophile was identified as Bacillus tequilensis CH by biochemical tests and 16S rRNA gene sequencing and assigned accession no. KC851857 by GenBank. The biosurfactant produced by B. tequilensis CH was partially characterized as a lipopeptide using thin-layer chromatography, Fourier transform infrared spectroscopy, and nuclear magnetic resonance techniques. The minimum effective concentration of a biosurfactant for inhibition of pathogenic biofilm (Escherichia coli and Streptococcus mutans) on hydrophilic and hydrophobic surfaces was found to be 50 μg ml^?1. This finding has potential for a variety of applications.     

Copolymers of 2-Hydroxyethyl Methacrylate and Alkyl Methacrylates. Part III. Thermal Behavior

The relative thermal stability of copolymers of 2-hydroxyethyl methacrylate-ethyl methacrylate (HEMA-EMA) and HEMA-n-butyl methacrylate (HEMA-BMA) was investigated by thermogravimetry in an air/nitrogen atmosphere. The effect of molecular weight on thermal degradation was evaluated by taking five fractions of HEMA-EMA and four of HEMA-BMA copolymers. The enthalpic changes associated with the endothermic transition were evaluated by differential scanning calorimetry. The structural changes taking place in these copolymers during thermal degradation in air at 200°C were investigated by IR.