Efficient on-chip isolation of HIV subtypes

HIV has caused a global pandemic over the last three decades. There is an unmet need to develop point-of-care (POC) viral load diagnostics to initiate and monitor antiretroviral treatment in resource-constrained settings. Particularly, geographical distribution of HIV subtypes poses significant challenges for POC immunoassays. Here, we demonstrated a microfluidic device that can effectively capture various subtypes of HIV particles through anti-gp120 antibodies, which were immobilized on the microchannel surface. We first optimized an antibody immobilization process using fluorescent antibodies, quantum dot staining and AFM studies. The results showed that anti-gp120 antibodies were immobilized on the microchannel surface with an elevated antibody density and uniform antibody orientation using a Protein G-based surface chemistry. Further, RT-qPCR analysis showed that HIV particles of subtypes A, B and C were captured repeatably with high efficiencies of 77.2 ± 13.2%, 82.1 ± 18.8, and 80.9 ± 14.0% from culture supernatant, and 73.2 ± 13.6, 74.4 ± 14.6 and 78.3 ± 13.3% from spiked whole blood at a viral load of 1000 copies per mL, respectively. HIV particles of subtypes A, B and C were captured with high efficiencies of 81.8 ± 9.4%, 72.5 ± 18.7, and 87.8 ± 3.2% from culture supernatant, and 74.6 ± 12.9, 75.5 ± 6.7 and 69.7 ± 9.5% from spiked whole blood at a viral load of 10,000 copies per mL, respectively. The presented immuno-sensing device enables the development of POC on-chip technologies to monitor viral load and guide antiretroviral treatment (ART) in resource-constrained settings.     

A fibre-optic thermometric sensor based on the thermo-optic effect of titanium dioxide coatings

An experimental determination of the thermo-optic effect of titanium dioxide is described in which the test element is a thin film deposited onto the end face of an optical fibre. The film acts as an etalon. The reflectivity of titanium dioxide films was measured as a function of temperature experimentally over the range 20 °C to 500 °C, and modelled theoretically to yield a value of the thermo-optic coefficient of − 1.49 × 10⁻⁴ K⁻¹. The use of the data in the design of a thin-film optical fibre temperature sensor is described.     

Comparing some predictions between Davidson-like potentials and interacting boson model: <Emphasis Type="Italic">X</Emphasis>(5) behavior of even-even <Superscript>128–140</Superscript>Nd isotopes

We denote that the level scheme of the transitional nuclei ^128–140Nd also presents the characteristic X(5) pattern, not only in the ground-state band, but also in some low-lying bands. An adequate point of the model leading to the X(5) symmetry is therefore confirmed. We also carry out calculations of positive-parity states of even-mass Nd nuclei within the framework of the interacting-boson model, and then the calculated energy values are compared with the experimental data along with the Davidson potential predictions. By comparing transitional behavior in the Nd nuclei with the predictions of an X(5) critical symmetry, we investigate an achievable degree of agreement between the predictions of the model leading to this symmetry and the interacting-boson model (IBM-1 and IBM-2). They agree well with the predictions of the experimental data. The text was submitted by the authors in English.     

Apolar constituents of some biologically active <Emphasis Type="Italic">Dianthus</Emphasis> species from Western Anatolia

The apolar constituents of four Dianthus (Caryophyllaceae) species were determined by GC-MS. Palmitic, linoleic, and oleic acids were detected as dominant components in all species. D. elegans d’Urv. var. elegans had the highest antioxidant activity. All four species also showed considerable antimicrobial activity against S. epidermidis and C. albicans.     

Chernobyl radioactivity on the Black Sea coast of Turkey

After the Chernobyl reactor accident, Eastern Black Sea coast was one of the heavily contaminated regions of Turkey. Clouds loaded with radioactive isotopes arrived the region on May 1986 and emptied their contents with the heavy rains that are frequently seen in the region. In order to asses the current level of contamination, several different samples, moss, lichen, litter, surface soil and soil cores were collected on August 1994. Samples were brought to the laboratory and their moisture, pH and organic matter contents were determined. Gamma-ray spectra of the samples were collected with a HpGe detector. (137)Cs was the major isotope observed. Activity of most litter samples were below 1000 Bq/kg, while most of the moss samples had activities below 5000 Bq/kg, there were a few with higher (137)Cs activities. Surface soil samples generally had activities less than 2000 Bq/kg and depth profiles of cesium activities in the soil cores showed regional variations.     

A Fiber Optic Wavelength Modulation Sensor Based on Tantalum Pentoxide Coatings for Absolute Temperature Measurements

A fiber optic low-coherence sensor based on the spectral shift of tantalum pentoxide thin films for absolute temperature sensing up to 650°C is described. A tantalum pentoxide single layer was deposited directly onto the cleaved end-face of a single mode optical fibre and was illuminated with an super luminescence diode (SLD) source through a directional coupler. Interference fringes of the film on reflection were obtained within the optical bandwidth of the SLD using an optical spectrum analyser. The spectral shift versus temperature rise showed no turning points and the output was unambiguous, linear, monotonic and gave about 0.016 nm wavelength shift in the spectrum per°C. A semi-empirical calibration procedure based on the refractive index (n) and thickness (l) of the tantalum pentoxide film for absolute thermometric measurements is described.     

Experimental investigation of the humidity induced change in the conduction mechanism of PEG

Characterization of the electrical properties of covalently linked polyethylene glycol thin films under a changing relative humidity is examined by dc measurements. At low humidity levels, electronic conduction takes place while the absorbed water contributes to this mechanism and increases the current. At around 70% relative humidity, as a result of the water clusters formed, the polymer melts from the semicrystalline form and the current shows a steeper increase. The water vapor condenses and conduction takes an ionic nature. There is a hysteresis between the absorption and desorption of water as the film cannot reach its semicrystalline form in the time interval of desorption. The polymer film could attain its pre-absorption form after annealing. PACS 72.60.+g; 72.80.Le     

Influence of In Vitro Human Digestion Simulation on the Phenolics Contents and Biological Activities of the Aqueous Extracts from Turkish Cistus Species

Oxidative stress is one of the significant precursors of various metabolic diseases such as diabetes, Parkinson’s disease, cardiovascular diseases, cancer, etc. Various scientific reports have indicated that secondary plant metabolites play an important role in preventing oxidative stress and its harmful effects. In this respect, this study was planned to investigate the phenolic profile and antioxidant and antidiabetic potentials of the aqueous extracts from Turkish Cistus species by employing in vitro methods. In vitro digestion simulation procedure was applied to all extracts to estimate the bioavailability of their phenolic contents. Total phenolic, flavonoid, phenolic acid and proanthocyanidin contents were determined for all phases of digestion. In addition, changes in the quantity of the assigned marker flavonoids (tiliroside, hyperoside and quercitrin) were monitored by High-Performance Thin Layer Chromatography (HPTLC) analysis. The antioxidant activity potentials of the extracts were studied by various methods to reveal their detailed activity profiles. On the other hand, in vitro α-amylase and α-glucosidase enzymes and advanced-glycation end product (AGE) inhibitory activities of the extracts were determined to evaluate the antidiabetic potentials of extracts. The results showed that aqueous extracts obtained from the aerial parts of Turkish Cistus species have rich phenolic contents and potential antioxidant and antidiabetic activities; however, their bioactivity profiles and marker flavonoid concentrations might significantly be affected by human digestion. The results exhibited that total phenolic contents, antioxidant activities and diabetes-related enzyme inhibitions of the bioavailable samples were lower than non-digested samples in all extracts.