Synthesis and structure of mono- and dinuclear cyclopentadienyl–indenyl complexes of iron(II) and further reactions to mixed tri- and tetranuclear iron–cobalt complexes

The reaction of a mixture of sodium cyclopentadienide and the monolithium salt or dilithium salt of 2,2-bis(indenyl)propane with FeCl₂ leads to the mononuclear complex [(η⁵-C₅H₅)Fe(η⁵-ind-C(CH₃)₂-ind)] (ind = 1-indenyl) (1) and the dinuclear complex [{(η⁵-C₅H₅)Fe(η⁵-ind)}₂C(CH₃)₂] (2), respectively. [(η⁵-Me₅C₅)Fe(tmeda)Cl] reacts with dilithium 1,1′-biindenyl under formation of [{(η⁵-Me₅C₅)Fe}₂(μ-η⁵:η⁵-1,1′-biind)] (4). Due to the annelated arene rings of the η⁵-indenyl ligands, 2 and 4 may act as 4-electron donor ligands, as exemplified by the reaction with the triple-decker complex [{(η⁵-Me₅C₅)Co}₂(μ-η⁶:η⁶-toluene)], which afforded the tetranuclear dimer of triple-decker complexes [{(η⁵-C₅H₅)Fe(η⁵-Me₅C₅)Co(μ-η⁵:η⁴-1-ind)}₂C(CH₃)₂] (3) and the trinuclear complex [{(η⁵-Me₅C₅)Fe}₂(η⁵-Me₅C₅)Co(μ₃-η⁵:η⁴:η⁵-1,1′-biind)] · Et₂O (5 · Et₂O) by replacement of the central toluene deck, respectively. The [(η⁵-Me₅C₅)Co] fragments of 3 and 5 are bonded via the six-membered rings of the indenyl ligands in a η⁴-fashion. Caused by the coordination to the Co atoms the six-membered rings lose their planarity and adopt a butterfly structure. The coordination geometry of the Fe atoms is similar in all five complexes. Each Fe atom is coordinated by the C atoms of one of the five-membered rings of the indenyl ligands in a slightly distorted η⁵ manner (η³ + η²-coordination) and by a cyclopentadienyl ligand in a regular η⁵-fashion. The structures of 3 and 5 represent the first examples of slipped triple-decker complexes which comprise indenyl ligands in a μ-η⁵:η⁴ coordination mode.     

Protonation-induced paramagnetism. Structures and stabilities of six- and seven-coordinate complexes of Os(II) in singlet and triplet states: a density functional study

Li, Yeh, and Taube in 1993 (J. Am. Chem. Soc. 1993, 115, 10384) synthesized a number of complexes which can be formally regarded as protonated Os(II) species. Some of these were paramagnetic, in contrast to the diamagnetism of the closed shell 5d(6) Os(II) ions. This intriguing phenomenon is investigated theoretically using density functional theory. The geometries, stabilities, and electronic structures of a series of six- and seven-coordinate osmium complexes were studied in gas phase and aqueous solution using the B3P86 functional, in conjunction with the isodensity-polarized continuum model of solvation. The general formula for these complexes is [Os(NH(3))(4)H(L(1)(x)())(m)()(L(2)(y)())(n)()](()(x)()(+)(y)()(+3)+), where L(1) and L(2) = H(2)O, NH(3), CH(3)OH, CH(3)CN, Cl(-), and CN(-), which could be regarded as protonated Os(II) species or hydrides of Os(IV), although according to this work the osmium-hydrogen interaction is best described as a covalent Os(III)-H bond, in which the hydrogen is near-neutral. The ground states are generally found to be singlets, with low-lying triplet excited states. Solvation tends to favor the singlet states by as much as approximately 18 kcal mol(-)(1) in the 3+ ions, an effect which is proportional to the corresponding difference in molecular volumes. To have realistic estimates of the importance of spin-orbit coupling in these systems, the spin-orbit energy corrections were computed for triplet [Os(NH(3))(4)](2+), [Os(NH(3))(4)H](3+), and [Os(NH(3))(4)H(H(2)O)](3+), along with gas-phase Os and its ions as well as [Os(H(2)O)(6)](3+). The seven-coordinate triplet-state complex [Os(NH(3))(5)H(CH(3)OH)](3+), which had been successfully isolated by Li, Yeh, and Taube, is predicted to be a stable six-coordinate complex which strongly binds to a methanol molecule in the second coordination shell. The calculations further suggest that the singlet-triplet splitting would be very small, a few kilocalories per mole at most. The geometries and the electronic structures of the complexes are interpreted and rationalized in terms of Pauling's hybridization model in conjunction with conventional ligand field theory that effectively precludes the existence of true seven-coordinate triplet-state complexes of the above formula.     

Finite-field method calculations. III. Dipole moment gradients,polarisability gradients and field-induced shifts in bond lengths,vibrational levels,

In this paper, the finite-field method is applied in calculating polarisabilities and, by extension, polarisability gradients. The method is also used to examine the shifts in a number of properties induced by electric fields of given strength. Model calculations at the SCF and Cl levels are reported for LiH. Estimates of the Raman scattering intensity and depolarisation ratio, obtained from the calculated polarisability gradient components, are presented. The dipole moment gradient, which is related to the infrared absorption intensity, is also reported. The properties for which field-dependent shifts are given comprise bond length, vibrational levels, spectroscopic constants, harmonic force constant, first anharmonic constant and dipole moment gradient.     

Full and partial deuterium solvent isotope effect studies of alpha-thrombin-catalyzed reactions of natural substrates

Proton inventory studies of the thrombin-catalyzed fibrinogen activation to fibrinopeptide A are most consistent with a two-proton bridge forming at the transition state probably between Ser195 OgammaH and His57 Nepsilon2 and His57 Ndelta1 and Asp102 COObeta- at the active site, with fractionation factors 0.66 +/- 0.03 under enzyme saturation with substrate and 0.64 +/- 0.03 at fibrinogen concentration at 0.2 Km, at pH 8.0, pD 8.6, and 25.0 +/- 0.1 degrees C. Strongly inverse solvent isotope effects (SIEs) result from inverse lag times and maximal slopes of blood clotting plots, which are also anion and cation dependent. The blood clot is much coarser in D2O, as indicated in clotting curves with 3-9 times shorter lag time and steeper slopes with respect to H2O. The finer the particles, the weaker the H-bonds interlocking the fibrin mesh and/or in water structure around fibrin. Proton inventories of inverse lag times and maximal slopes of blood clotting curves in buffers containing Na+ and Cl- ions give the best fit to an exponential dependence on deuterium content in the buffer and give fractionation factors 5.6 +/- 0.5 and 7.8 +/- 0.6 at pH 8.0 and 25.0 +/- 0.1 degrees C. The thrombin-catalyzed activation of protein C (PC) to APC is associated with inverse kinetic SIEs (KSIEs) of 0.75 +/- 0.09 and 1.02 +/- 0.06 in 0.3 M NaCl and 0.3 M choline chloride, respectively, at substrate concentrations = 0.2 Km. In comparison, thrombin-catalyzed hydrolysis of chromogenic substrates gives greater KSIEs (Enyedy, E. I.; Kovach. I. M J. Am. Chem. Soc. 2004, 126, 6017-6024) and more complex proton inventories than the ones reported here for the first time for natural substrates. The present study illuminates differences in the character of the rate-determining transition state for the initial phase of the two physiological reactions catalyzed by thrombin.     

Oxidation of CO by SO2: a theoretical study

The elementary reaction SO(2) + CO --> CO(2) + SO((3)Sigma) (1) and the subsequent reaction SO((3)Sigma) + CO --> CO(2) + S((3)P) (2) have been studied by the application of the Gaussian-3//B3LYP quantum chemical approach to characterize the potential energy surfaces and transition state kinetic analysis to derive rate coefficients. Reaction 1 is found to take place via two transition states (TS), a cis-OSOCO TS and a trans-OSOCO TS. Reaction via the cis-TS is concerted and takes place on a singlet surface. Intersystem crossing to the final products occurs after passage through the barrier on the singlet surface. The trans-TS leads to a very weakly bound singlet OSOCO intermediate that then passes through a second TS (on the triplet surface) to form the products. Reaction 2 takes place on triplet surfaces. There is a concerted reaction through a cis-SOCO TS and a weakly bound trans-SOCO has also been identified. Reaction 2 is analogous to the reaction CO + O(2)((3)Sigma) --> CO(2) + O((3)P) (3), and this reaction has been reinvestigated at a similar level of theory and the rate coefficient derived by quantum chemistry is compared with experiment. The sensitive effects of trace impurities such as H(2), H(2)O, and hydrocarbons on the accurate experimental determination of the rate coefficient of reaction 3 is discussed. Using rate coefficients for reactions 1 and 2 obtained via quantum chemical calculations, we have been unable to model the extent of decomposition of SO(2) measured in a shock tube study of reaction between SO(2) and CO [Bauer, S. H.; Jeffers, P.; Lifshitz, A.; Yadava, B. P. Proc. Combust. Inst. 1971, 13, 417]. In light of the known sensitivity of reaction 3 to trace impurities, we have incorporated trace amounts of H(2), CH(4), or H(2)O, together with our rate coefficients for (1) and (2), in a kinetic model of Alzueta et al. [Combust. Flame 2001, 127, 2234], which is then shown to be able to substantially model the SO(2) data of Bauer et al. In the course of this modeling study we also computed heats of formation for a number of sulfur-containing small molecules: HS, HSO, HSOH, HOSO, HS(2), HSO(2), HOSO(2), HOSOH, and HOSHO.     

Study of the effect of ion channel modulators on photosynthetic oxygen evolution

Various ion channel activities can be recorded by electrophysiological methods in the outer and inner envelope membranes of chloroplasts as well as in the thylakoid membrane. However, most of these channels are poorly characterized from a pharmacological point of view. Furthermore, the molecular identity has been determined only for a few of them, preventing an understanding of their role in plant physiology. By allowing specific ion fluxes across plastidial membranes, these ion channels may either directly or indirectly regulate photosynthesis, as has been hypothesized earlier. We have determined the effect of various ion channel modulators [indole-3-acetic acid, 5-nitro-2-(3-phenylpropylamino)-benzoate, (-)-epigallocatechin-3-gallate, p-chlorophenoxyacetic acid, Konig's polyanion, Cs+, Gd3+, 4-aminopyridine, tetraethylammonium chloride, charybdotoxin, nimodipine, and cyclosporin A] on the efficiency of photosynthetic oxygen evolution in intact chloroplasts, broken chloroplasts, and isolated thylakoids. The data may improve our understanding of chloroplast ion channels and identifies inhibitors which may be exploited for electrophysiological studies.     

Seasonal Variations of Polycyclic Aromatic Hydrocarbons in Air Particulate Extracts

Aroma-active volatile organic compounds (VOCs) present in brandies produced in the Slovak Republic have been identified by gas chromatography–olfactometry (GC–O) and GC–MS. GC–O data treatment was based on a concept of detection frequency. Direct injection of samples was used due to its simplicity and the fact that determined composition is that of the original samples. This is especially important for correlation of results obtained by sensory evaluation and gas chromatographic measurements. Among 200 organic compounds found by GC only 71 showed olfactive properties at the given concentration levels. In order to identify aroma-active substances, linear retention indices (LRI) have been calculated and compared with available LRI libraries. The most aroma-active compounds have been found in samples of Frucon brandy, while Vinovica showed their minimal content. The results obtained by gas chromatography have been compared with sensory evaluation of brandy odor.     

Polarizing the Nazarov cyclization: the impact of dienone substitution pattern on reactivity and selectivity

The impact of dienone substitution on the Nazarov cyclization has been examined in detail. Substrates bearing different substituents at each of four positions on the dienone backbone were systematically probed in order to identify trends leading to higher reactivity and better selectivity. Desymmetrization of the pentadienyl cation and oxyallyl cation intermediates through placement of polarizing groups at both the C-2 and C-4 positions was found to be particularly effective. These modifications allowed cyclizations to occur in the presence of catalytic amounts of mild Lewis acids. It was also found that stereoconvergent cyclization of mixtures of E and Z isomers of alkylidene beta-ketoesters occurred via an efficient isomerization process that occurred under the reaction conditions.