Generation and development of RNA ligase ribozymes with modular architecture through "design and selection"

In vitro selection with long random RNA libraries has been used as a powerful method to generate novel functional RNAs, although it often requires laborious structural analysis of isolated RNA molecules. Rational RNA design is an attractive alternative to avoid this laborious step, but rational design of catalytic modules is still a challenging task. A hybrid strategy of in vitro selection and rational design has been proposed. With this strategy termed "design and selection," new ribozymes can be generated through installation of catalytic modules onto RNA scaffolds with defined 3D structures. This approach, the concept of which was inspired by the modular architecture of naturally occurring ribozymes, allows prediction of the overall architectures of the resulting ribozymes, and the structural modularity of the resulting ribozymes allows modification of their structures and functions. In this review, we summarize the design, generation, properties, and engineering of four classes of ligase ribozyme generated by design and selection.     

Orientation Control of Photo‐Immobilized Antibodies on the Surface of Azobenzene‐Containing Polymers by the Introduction of Functional Groups

In our photo‐induced immobilization technique for an antibody (IgG) using azopolymers, the introduction of COOH and NMe₂ into the azopolymers, which can introduce surface charges, strongly affected the immobilization properties such as the efficiency of immobilization and the activity of the immobilized IgG (i.e., the orientation of the immobilized IgG). The introduction of COOH promoted a more active orientation of the immobilized IgG. The orientation was determined during the adsorption process onto the azopolymer surface in solution before photo‐immobilization, and was maintained during the photo‐immobilization. The surface charge of the azopolymer appears to be an important factor for IgG orientation, which involves electrostatic interactions between its Fab and the azopolymer surface.

     

Pure red electrophosphorescence from polymer light-emitting diodes doped with highly emissive bis-cyclometalated iridium(III) complexes

In order to develop highly emissive red phosphorescent materials for OLED application, novel bis-cyclometalated iridium(III) complexes were developed using the 1-(dibenzo[b,d]furan-4-yl)isoquinolinato-N,C^3′ (dbfiq) cyclometalating ligand. When 1,3-bis(3,4-dibutoxyphenyl)propane-1,3-dionate (bdbp) is employed as an ancillary ligand, Ir(dbfiq)₂(bdbp) 1 exhibits red photoluminescence (PL) at 640 nm with a quantum yield (Φ_PL) of 0.61 (in toluene, 298 K). Replacement of bdbp to dipivaloylmethanate (dpm) and acetylacetonate (acac) (Ir(dbfiq)₂(dpm) 2 and Ir(dbfiq)₂(acac) 3, respectively) does not affect the PL spectrum, but reduces Φ_PL to 0.55 and 0.49 for 2 and 3, respectively. Similar tendency is also found in the doped poly(methyl methacrylate) (PMMA) film, and 1 is more emissive (Φ_PL = 0.17) than 2 and 3 (Φ_PL = 0.08 and 0.06, respectively). Using 1 as a phosphorescent dopant, polymer light-emitting diodes (PLEDs) were fabricated, of which structure was ITO/PEDOT:PSS (40 nm)/PVCz:1:PBD (100 nm)/CsF (1 nm)/Al (250 nm). Pure red electroluminescence (EL) is obtained from the fabricated PLEDs, affording a CIE chromaticity coordinate of (0.68, 0.31). When 0.51 mol% of 1 is incorporated in the PVCz-based emitting layer, the PLED shows maximum luminance of 7270 cd m⁻² at 16.5 V, power efficiency of 1.4 lm W⁻¹ at 7.5 V, and external quantum efficiency of 6.4% at 9.0 V. PLEDs with the same structure and components were also fabricated using 2 and 3, and their device characteristics were investigated. In proportion to the PL quantum yields, 1 affords better device performance than 2 and 3. Owing to four butoxy groups introduced to the bdbp ligand, 1 exhibits high solubility in organic solvents such as chloroform and toluene, and thus, is an excellent red phosphorescent dopant for solution-processed OLEDs.     

A domino process for benzyne preparation: dual activation of o-(trimethylsilyl)phenols by nonafluorobutanesulfonyl fluoride

Benzynes were generated from o-(trimethylsilyl)phenols using nonafluorobutanesulfonyl fluoride (NfF) by a domino process, i.e., the nonaflation of the phenolic hydroxyl group of o-(trimethylsilyl)phenols by NfF followed by the attack of the produced fluoride ion on the trimethylsilyl group. The generated benzyne immediately underwent various reactions to give polysubstituted benzenes.     

Infrared intensities of ion-water interactions in aqueous electrolyte solutions

The i.r. absorption intensities have been measured of the fundamental vibrations of water molecules in metal halide aqueous solutions. Pseudo-isosbestic points were observed in the regions of both the stretching and bending vibrations and interpreted in terms of two states of water molecules in the solutions. The intensities of the stretching vibrations of water molecules coordinated to the dissolved ions have been estimated. The intensities become stronger in the order, Li⁺ > Na⁺ > K⁺ for the cations and F^- > Cl^- > Br^- > I^- for the anions. These orders are consistent with the strengths of the ion-water interactions, which are related to the dynamical behavior of the water molecules in the primary hydration shell.     

Dielectric-field effect correction on i.r. band shapes in the liquid phase

The dielectric-field correction on i.r. band shape in the liquid has been studied by using the Lorentz internal field. The deformation of the band shape is inappreciable for a weak absorption band that becomes measurable only at a sample thickness larger than 10μ. The shapes of the strong singlet and doublet bands of hexafluorobenzene at 1530 cm^?1 and near 1000 cm^?1, respectively, and also of the doublet band of carbon tetrachloride near 790 cm^?1 have been measured in dilute solutions and compared with those for the pure liquid.     

Band shapes and moment analysis of the far-infrared absorptions of dipolar molecules in solutions

The moment analyses were performed on the far-infrared absorption bands of CH₃CN, CHCl₃, CH₂Cl₂, and their deuterated compounds dissolved in nonpolar solvents. The values of torque acting on the solute molecules were estimated from the fourth moments. The band profiles were simulated by means of the continued-fraction representation of the time correlation function by Mori, using the moment values obtained. The third order long-time approximation of the correlation function yields essentially good simulations. The effective rotation angles of molecules between collisions were estimated from the first positive-to-negative turning points of the memory functions. The solvent effects on the torque and the rotation angle were consistent with each other.     

Stereoselective synthesis of tetrahydrofuran-3-carbaldehyde

Trans-tetrahydrofuran-3-carbaldehydes are prepared by ruthenium-catalyzed isomerization of 4,7-dihydro-1,3-dioxepines and subsequent Lewis acid-catalyzed 1,3-alkyl migration.