Presence of galactosylated core fucose on N-glycans in the planaria Dugesia japonica

Planarial species are of especial interest to biologists due to the phenomenon of pluripotency and, in comparison to other developmental processes, it can be hypothesised that glycan-lectin interactions may play a role. In order to examine the N-glycans of one of these organisms, Dugesia japonica, peptide:N-glycosidase A was employed and the released glycans were subject to pyridylamination, HPLC and mass spectrometric analysis. A range of oligomannosidic glycans was observed with a trimethylated Man(5) GlcNAc(2) structure being the dominant species. Three glycans were also observed to contain deoxyhexose; in particular, a glycan with the composition Hex(4) HexNAc(2) Fuc(1) Me(2) was revealed by exoglycosidase digestion, in combination with MS/MS, to contain a galactosylated core α1,6-fucose residue, whereas this core modification was found to be capped with a methylhexose residue in the case of a Hex(5) HexNAc(2) Fuc(1) Me(3) structure. This is the first report of these types of structures in a platyhelminth and indicates that the 'GalFuc' modification of N-glycans is not just restricted to molluscs and nematodes.     

Chromatographic Purification and Identification of Polar Metabolites of Benazolin-Ethyl from Soybean

Abstract

The metabolism of benazolin-ethyl (4-chloro-2-oxobenzothiazolin-3-ylacetic acid ethyl ester), a post emergence herbicide, has been studied in soybean using (¹⁴C)-phenyl labelled compound. Preliminary studies were performed on excised soybean leaves. Following hydrolysis of the ethyl ester to benazolin acid (4-chloro-2-oxobenzothiazolin-3-ylacetic acid), extensive metabolism to polar conjugates was observed. The polar fraction from a Bligh-Dyer extraction was purified by solvent partitioning, preparative TLC and reverse phase HPLC with ion suppression. The two major metabolites were characterised by fast atom bombardment mass spectrometry with accurate mass determination as an aspartate conjugate and a malonyl-β-glucose ester of benazolin acid. Subsequent experiments were performed by spraying intact plants at growth stage V4. The major polar metabolite isolated one month after treatment was identified as the aspartate conjugate by mass spectrometry and high resolution nuclear magnetic resonance spectroscopy.     

Quantum design of ionic liquids for extreme chemical inertness and a new theory of the glass transition

In many modern technologies (such as batteries and supercapacitors), there is a strong need for redox-stable ionic liquids. Experimentally, the stability of ionic liquids can be quantified by the voltage range over which electron tunneling does not occur, but so far, quantum theory has not been applied systematically to this problem. Here, we report the electrochemical reduction of a series of quaternary ammonium cations in the presence of bis(trifluoromethylsulfonyl)imide (TFSI) anions and use nonadiabatic electron transfer theory to explicate the results. We find that increasing the chain length of the alkyl groups confers improved chemical inertness at all accessible temperatures. Simultaneously, decreasing the symmetry of the quaternary ammonium cations lowers the melting points of the corresponding ionic liquids, in two cases yielding highly inert solvents at room temperature. These are called hexyltriethylammonium TFSI (HTE-TFSI) and butyltrimethylammonium TFSI (BTM-TFSI). Indeed, the latter are two of the most redox-stable solvents in the history of electrochemistry. To gain insight into their properties, very high precision electrical conductivity measurements have been carried out in the range +20 °C to +190 °C. In both cases, the data conform to the Vogel-Tammann-Fulcher (VTF) equation with “six nines” precision (R ²?>?0.999999). The critical temperature for the onset of conductivity coincides with the glass transition temperature T _g. This is compelling evidence that ionic liquids are, in fact, softened glasses. Finally, by focusing on the previously unsuspected connection between the molecular degrees of freedom of ionic liquids and their bulk conductivities, we are able to propose a new theory of the glass transition. This should have utility far beyond ionic liquids, in areas as diverse as glassy metals and polymer science.     

Coupling electrospray corona discharge, charge reduction and ion mobility mass spectrometry: From peptides to large macromolecular protein complexes

We present the design and implementation of a home-built point-to-plane corona discharge probe, which rapidly and efficiently charge reduces biological ions generated by electrospray ionization (ESI). The molecules analysed ranged from small peptides such as Glu-fibrinopeptide B (1.5 kDa), small proteins such as myoglobin (16.9 kDa), polymers such as polyethylene glycol (PEG 10 k) which all showed intense singly charged ions; to large native multiprotein complexes such as GroEL (802 kDa) which show a broad range of charge-reduced species. The corona discharge probe operates at atmospheric pressure and was directly interfaced with a standard-ESI or nanoflow-ESI source of quadrupole ion mobility time-of-flight mass spectrometer. The corona discharge probe is completely modular and could potentially be mounted to any commercial or research grade mass spectrometer with an ESI source. The level of charge reduction is precisely controlled by the applied voltage and/or probe gas flow rate and when in operation, results in approximately a 50 % reduction in total ion current. We also present the combination of corona discharge and travelling wave ion mobility and assign helium collision cross-section values (Ω_He) to the charge reduced species of the native protein complex pyruvate kinase. It would appear that the Ω_He of the +20 charge state for pyruvate kinase is approximately 20 % smaller than the +35 charge state. Finally, we discuss the potential benefits and concerns of utilising charge reduced protein species as a means of extending the travelling wave collision cross-section calibration range over that which is already published.     

Influence of blend microstructure on bulk heterojunction organic photovoltaic performance

The performance of organic photovoltaic devices based upon bulk heterojunction blends of donor and acceptor materials has been shown to be highly dependent on the thin film microstructure. In this tutorial review, we discuss the factors responsible for influencing blend microstructure and how these affect device performance. In particular we discuss how various molecular design approaches can affect the thin film morphology of both the donor and acceptor components, as well as their blend microstructure. We further examine the influence of polymer molecular weight and blend composition upon device performance, and discuss how a variety of processing techniques can be used to control the blend microstructure, leading to improvements in solar cell efficiencies.     

Nanomolar detection with high sensitivity microfluidic absorption cells manufactured in tinted PMMA for chemical analysis

We describe a novel, cost effective and simple technique for the manufacture of high sensitivity absorption cells for microfluidic analytical systems. The cells are made from tinted polymethyl methacrylate (PMMA) in which microfluidic channels are fabricated. Two windows (typically 250 μm thick, resulting in little optical power loss) are formed at either end of the channel through which light is coupled. Unwanted stray light from the emitter passes through a greater thickness of the tinted substrate (typically the length of the cell) and is preferentially absorbed. In effect, this creates a pin-hole configuration over the length of the absorption cell, providing improved performances (sensitivity, S/N ratios, baseline noise and limit of detection) when used as an absorption cell compared to clear substrates. The method is used to achieve a LOD of 20 nM with a colourimetric iron assay and a LOD of 0.22 milli-absorption units with a pH assay.     

New volatile strontium and barium imidazolate complexes for the deposition of group 2 metal oxides

We report the synthesis, characterization, and experimental density function theory-derived properties of new volatile strontium and barium imidazolate complexes, which under atomic layer deposition conditions using ozone as a reagent can deposit crystalline strontium oxide at 375 °C.     

Unusual asymmetry in halobenzenes,a solid-state,gas-phase and theoretical investigation

The molecular structures of 1-Br-4-F-C₆H₄ and 1-Cl-4-F-C₆H₄ have been studied in the gas phase using gas electron diffraction (GED) and ab initio methods. The structure of 1-Cl,4-F-C₆H₄ in the crystalline phase has also been studied, but whilst the gaseous structures were found to possess C _2v symmetry, the solid-state structure was found to be quite distorted, with three molecules in the asymmetric unit. These fragments only possess C _s symmetry in the plane of the molecules, as opposed to the C _2v symmetry observed in the gas phase. The bonding motifs within the solid-state structure are very unusual and unexpected, with quite different C–F bond lengths for the three moieties, and are a result of weak hydrogen-halogen interactions within the structure.     

Bulk and shear mechanical loss of titania-doped tantala

We report on the mechanical loss from bulk and shear stresses in thin film, ion beam deposited, titania-doped tantala. The numerical values of these mechanical losses are necessary to fully calculate the Brownian thermal noise in precision optical cavities, including interferometric gravitational wave detectors like LIGO. We found the values from measuring the normal mode mechanical quality factors, Q's, in the frequency range of about 2000-10,000 Hz, of silica disks coated with titania-doped tantala coupled with calculating the elastic energy in shear and bulk stresses in the coating using a finite element model. We fit the results to both a frequency independent and frequency dependent model and find ${?}_{\mathrm{shear}}=(8.3\pm 1.1)\times {10}^{?4}$, ${?}_{\mathrm{bulk}}=(6.6\pm 3.8)\times {10}^{?4}$ with a frequency independent model and ${?}_{\mathrm{shear}}\left(f\right)=(5.0\pm 0.7)\times {10}^{?4}+(5.4\pm 1.1)\times {10}^{?8}f$, ${?}_{\mathrm{bulk}}\left(f\right)=(11\pm 2.8)\times {10}^{?4}?(8.7\pm 4.7)\times {10}^{?8}f$ with a frequency dependent (linear) model. The ratio of these values suggest that modest improvement in the coating thermal noise may be possible in future gravitational wave detector optics made with titania-doped tantala as the high index coating material by optimizing the coating design to take advantage of the two different mechanical loss angles.