Quantification of a three-dimensional velocity vector using spectral-domain Doppler optical coherence tomography

Multiangle, fiber-based, spectral-domain Doppler optical coherence tomography with a phase-resolved algorithm is presented to measure three components of an arbitrary velocity vector. A beam divider that divides a probe beam to have five independent viewpoints and path length delays was designed. The divider was inserted into the sampling arm of a Doppler optical coherence tomography system between the collimator and the first galvo mirror of a two-axis galvo scanner. The divider produced five independent D k's (the average difference between the wave vectors of incoming and outgoing beams) after passing through the focusing lens while keeping two-axis scanning capability. After calibration, an unknown velocity vector field inside a microtube was quantified by solving a three-dimensional minimization problem.     

Object dependent sweep width reduction with spectral-spatial EPR imaging

For spectral-spatial EPR imaging, prior knowledge about the spatial support of an imaged object can be exploited in two ways. We can shrink the spatial field of view (FOV) to closely wrap the object in a sphere or reduce the sweep width in a projection dependent fashion. Use of a smaller spatial FOV with the same number of samples enhances spatial resolution by reducing voxel volume at the expense of signal-to-noise and a consequent degraded line-width resolution. We have developed another approach to define sweep width that prunes away the portions of the projection sweep with no signal. This reduces data acquisition time for the continuous wave (CW) EPR image proportional to the sweep width reduction. This method also avoids voxel volume reduction. Using the reduced-sweep method, we decreased the data acquisition time by 20% maintaining spatial and linewidth resolution.     

Diffusion of one or more components of a silane adhesion-promoting mixture into poly(methyl methacrylate)

The surface-sensitive technique of sum frequency generation (SFG) vibrational spectroscopy has been applied to study the buried interfaces between different polymers including deuterated polystyrene (d-PS) and deuterated poly(methyl methacrylate) (d-PMMA) and a two-component silane adhesion-promoting mixture (SAPM) composed of (3-glycidoxypropyl)trimethoxysilane (gamma-GPS) and a methylvinylsiloxanol (MVS). Because of the dissolution of d-PS, no SFG CH stretching signals could be collected from the d-PS/gamma-GPS interface, and SFG signals collected from the d-PS/SAPM interface gradually disappeared over time. SFG results also showed that gamma-GPS can diffuse through the d-PMMA film. The diffusion of gamma-GPS through the d-PMMA film was confirmed by SFG studies on the interface between gamma-GPS and a d-PMMA/PS two-polymer layer system. Initially the SFG signal from the PS layer was detected. However, after gamma-GPS diffused through the d-PMMA film, the PS film was dissolved by the silane, and thus the SFG signal from PS was lost. Similar experiments have been carried out at the interface between the SAPM and the d-PMMA/PS two-polymer layer system and it was found that the diffusion time of the gamma-GPS in the SAPM through the d-PMMA film was significantly longer. These results were much different to those from previous SFG studies on the analogous PET interfaces and appear consistent with differences in solubility parameters calculated for these systems.     

Design, synthesis, and antiangiogenic effects of a series of potent novel fumagillin analogues

A series of fumagillin analogues containing the C6-substituted cinnamoyl moiety were designed, synthesized, and evaluated for antiangiogenic activity. Among them, 4-hydroxyethoxy-cinnamoyl fumagillol (4a) and 4-hydroxyethoxy-3,5-dimethoxycinnamoyl fumagillol (4d) exhibited more potent anti-proliferation activity in CPAE and HUVEC cells with low cytotoxicity in vitro. These compounds are presently under further pharmacological evaluation studies.     

A highly conformationally specific alpha- and beta-Ala+ decarboxylation pathway

One-photon ionization of alanine and beta-alanine induces the decarboxylation reaction which occurs with the concomitant intramolecular hydrogen transfer in a highly conformationally specific manner.     

Quantitative analysis of phosphatidylcholine in rat liver tissue by nanoflow liquid chromatography/tandem mass spectrometry

A quantitative method was developed for the determination of phosphatidylcholine (PC) species concentration using nanoflow LC-ESI-MS/MS. In this study, a calibration method is developed to determine the effect of PC carbon chain length on MS peak intensity. Using the multiple standard addition method, a relationship between the peak intensities of different PC species from nanoflow LC-MS and carbon chain length is established first using different injection amounts of PC standards. From this relationship, a calibration curve for each carbon chain length can be obtained for the concentration calculation. It was found that the MS peak area of PC species analyzed by nanoflow LC-MS linearly decreased with increased acyl carbon numbers, and that the effect of the degree of acyl chain unsaturation on MS peak intensity was minimized when the injection amount was maintained at less than 1 pmol. The method was applied for the quantitative calculation of 34 PC species from rat liver, which were identified from data-dependent MS/MS analysis during nanoflow LC separation.     

Coarse-graining of protein structures for the normal mode studies

The coarse-grained structural model such as Gaussian network has played a vital role in the normal mode studies for understanding protein dynamics related to biological functions. However, for the large proteins, the Gaussian network model is computationally unfavorable for diagonalization of Hessian (stiffness) matrix for the normal mode studies. In this article, we provide the coarse-graining method, referred to as "dynamic model condensation," which enables the further coarse-graining of protein structures consisting of small number of residues. It is shown that the coarser-grained structures reconstructed by dynamic model condensation exhibit the dynamic characteristics, such as low-frequency normal modes, qualitatively comparable to original structures. This sheds light on that dynamic model condensation and may enable one to study the large protein dynamics for gaining insight into biological functions of proteins.     

Functional regulation of hepatic cytochrome p450 enzymes by physicochemical properties of phospholipids in biological membranes

Knowledge regarding the regulation of hepatic cytochrome P450 (P450) is crucial to the fields of drug therapy and drug development, as well as to our understanding of the mechanisms underlying the metabolic activation of toxic and carcinogenic compounds. P450 is a membrane-anchored protein that shows a variety of interaction with membrane phospholipids, which affect the membrane topology and catalytic activities of the protein. In particular, anionic phospholipids, nonbilayer forming lipids, and the degree of saturation of the lipid fatty acyl chain play important roles in the functional regulation of P450, as well as in the bilayer structure of the membrane. However, despite the importance of phospholipids in the regulation of P450s, the interaction of the protein with membrane phospholipids, and the membrane properties induced by phospholipids which regulate P450, are unclear. In this review, we describe the effect of the physicochemical properties of the phospholipid constituents of biological membranes on hepatic P450 catalytic activity, membrane insertion (and/or penetration), and structural changes.