Screening molecular associations with lipid membranes using natural abundance 13C cross-polarization magic-angle spinning NMR and principal component analysis

We describe an NMR approach for detecting the interactions between phospholipid membranes and proteins, peptides, or small molecules. First, 1H-13C dipolar coupling profiles are obtained from hydrated lipid samples at natural isotope abundance using cross-polarization magic-angle spinning NMR methods. Principal component analysis of dipolar coupling profiles for synthetic lipid membranes in the presence of a range of biologically active additives reveals clusters that relate to different modes of interaction of the additives with the lipid bilayer. Finally, by representing profiles from multiple samples in the form of contour plots, it is possible to reveal statistically significant changes in dipolar couplings, which reflect perturbations in the lipid molecules at the membrane surface or within the hydrophobic interior.     

Benzotriazol-1-ylmethylammonium salts synthesis and reactivity

Benzotriazol-1-ylmethylamines on treatment with alkylating agents afford benzotriazol-1-ylmethylammoni-um salts, also available from reactions of chloromethylbenzotriazole with tertiary amines. In deuterated solvents under basic conditions the methylene protons of these salts exchange with deuterium. At elevated temperatures, an alkyl group substituent migrated from the ammonium center to the benzotriazolyl N-3. Reactions of the salts with Grignard reagents afforded various products arising from substitution of the ammonium moiety and/or from attack on the benzotriazolyl N-3 or on the benzenoid ring.     

Use of gamma-carboxy-alpha,beta-unsaturated aldehydes as synthetic equivalents of beta,gamma-unsaturated aldehydes in a novel stereoselective approach to diketides

[reactions: see text] A two-step aldol/Pd-catalyzed formate reduction sequence allows for convenient, stereoselective access to products of great potential in synthetic approaches to polyketides. A novel diastereoselective Pd-catalyzed formate reduction of allylic acetates is reported.     

Strain-release 2-azaallyl anion addition/borylation of [1.1.1]propellane: synthesis and functionalization of benzylamine bicyclo[1.1.1]pentyl boronates

We report a 3-component reaction between N-benzyl ketimines, [1.1.1]propellane, and pinacol boronates to generate benzylamine bicyclo[1.1.1]pentane (BCP) pinacol boronates. These structures are analogous to highly sought diarylmethanamine cores, which are common motifs in bioactive molecules. We demonstrate the versatility of the boronate ester handle via downstream functionalization through a variety of reactions, including a challenging Pd-catalyzed (hetero)arylation that exhibits a broad substrate scope. Together, these methods enable the synthesis of high-value BCP benzylamines which are inaccessible by existing methods. Furthermore, we demonstrate the successful application of these newly developed (hetero)arylation conditions to a variety of challenging tertiary pinacol boronates, including nitrogen-containing heterocycles, 1,1-disubstituted cyclopropanes, and other BCP cores.

We report a 3-component reaction between N-benzyl ketimines, [1.1.1]propellane, and pinacol boronates to generate benzylamine bicyclo[1.1.1]pentane (BCP) pinacol boronates.     

Recombinant phytochrome A in yeast differs by its spectroscopic and photochemical properties from the major phyA' and is close to the minor phyA": evidence for posttranslational modification of the pigment in plants.

Previously, two pools of phytochrome A (phyA' and phyA") have been detected by in situ low-temperature fluorescence spectroscopy and photochemistry; it was suggested that they might differ in the nature of their posttranslational modification. In order to verify this possibility Arabidopsis and rice (Oryza) phyA were expressed in yeast and the pigments were assembled in vivo with phycocyanobilin (PCB) and phytochromobilin (P phi B). The resulting recombinant phytochromes in the red-light-absorbing form (Pr) were characterized in the yeast cell by (1) the fluorescence emission spectra; (2) the temperature dependence of Pr fluorescence intensity and activation energy of fluorescence decay; and (3) the extent of photoconversion of Pr into photoproduct lumi-R (gamma 1) or far-red-light absorbing form (Pfr) (gamma 2). Both Arabidopsis phyA/PCB and Oryza phyA/P phi B had low gamma 1 of ca 0.05, allowing their attribution to the Pr" phenomenological type of phytochrome comprising phyA", phyB and cryptogam phytochromes. The spectroscopic properties of Oryza phyA/P phi B were also very close to phyA". However, both investigated holoproteins differed from phyA", both with respect to the character of temperature dependence of the fluorescence yield and activation energy. Thus, recombinant Oryza phyA/P phi B is similar but not identical to phyA". The data demonstrate that the low-abundance-fraction plant phyA (phyA") comes from the same gene as the major (phyA') fraction. Because both endogenous phyA fractions differ from the phytochrome expressed in yeast, they appear to be posttranslationally modified and/or bound to partner proteins or cellular substructures. However, the character of the presumed chemical modification is different in phyA' and phyA" and its extent is more profound in the case of the former.     

Carbon-fluorine bond activation coupled with carbon-carbon bond formation at iridium. Confirmation of complete kinetic diastereoselectivity at the new carbon stereocenter by intramolecular trapping using vinyl as the migrating group

The iridium(perfluoropropyl)(vinyl) complex CpIr(PMe(3))(n-C(3)F(7))(CH=CH(2)) (5) has been prepared. It has been characterized by X-ray crystallography, and its ground state conformation in solution has been determined by (19)F{(1)H} HOESY NMR studies. It reacts with the weak acid lutidinium iodide to afford the eta(1)-allylic complex CpIr(PMe(3))((Z)-CH(2)CH=CFC(2)F(5))I (6), which has also been characterized crystallographically. The mechanism of C-F bond activation and C-C bond formation leading to 6 has been elucidated in detail by studying the reaction of 5 with lutidinium tetrakis[3,5-bis(trifluoromethyl)phenyl]borate [LutH(+)B(ArF)(4)(-)], containing a weakly coordinating counteranion. The main kinetic product of this reaction, determined by (19)F{(1)H} HOESY studies at -50 degrees C, is the endo-CpIr(PMe(3))(anti-eta(3)-CH(2)CHCFCF(2)CF(3))[B(ArF)(4)] diastereomer 9, along with a small amount of the exo-syn-isomer 8. Isomer 9 rearranges at -20 degrees C to its exo-anti isomer 7, and subsequently to the thermodynamically favored exo-syn-isomer 8, which has been isolated and crystallographically characterized. Complex 8 reacts with iodide to afford complex6. On the basis of the unambiguously defined kinetically controlled stereochemistry of 9 and 8, a detailed mechanism for the C-F activation/C-C coupling reaction is proposed, the principal conclusion of which is that C-F activation is completely diastereoselective.     

Validation study to demonstrate the equivalence of a minor modification (TECRA ULTIMA protocol) to AOAC Method 998.09 (TECRA Salmonella Visual Immunoassay) with the cultural reference method

The TECRA Salmonella Visual Immunoassay (VIA) using Rappaport-Vassiliadis RV[R10] as a single selective enrichment broth has Final Action approval (AOAC Method 998.09). TECRA has recently developed a protocol (TECRA ULTIMA), which involves the addition of a new additive to a 1 mL aliquot of the RV[R10] broth, prior to the heat-killing step, thereby allowing the RV[R10] broth to be tested directly in the kit and thus eliminating the need for the 2 h post-enrichment in M broth. An in-house validation study was conducted to compare the modified AOAC Method 998.09 to the reference culture method. Three foods were used in the study: Naturally contaminated raw ground poultry at high (10-50 cells/25 g), and low (1-5 cells/25 g) levels; and milk powder and peanut butter, artificially inoculated at low and high levels with Salmonella bovismorbificans and S. enterica Mbandaka, respectively. Twenty test portions were analyzed for each level with 10 uninoculated control samples per food. Overall, no significant differences (p <0.05) were observed when the proportion of positive test portions for the modified VIA were compared with that for the reference method. This minor modification, which employs the additive (provided in the TECRA ULTIMA SALMONELLA Test Kit) to permit the direct analysis of RV[R10] broth has demonstrated the utility of the TECRA ULTIMA SALMONELLA protocol. It is recommended that the minor modification to Method 998.09 be approved First Action as an additional option within the method.     

New pyrimidine- and fluorene-containing oligo(arylene)s: synthesis, crystal structures, optoelectronic properties and a theoretical study

New pyrimidine containing oligo(arylene)s, notably the pyrimidine-fluorene hybrid systems 13-16, have been synthesised by Suzuki cross-coupling methodology. An efficient synthesis of the key reagent 9,9-dihexylfluorene-2,7-diboronic acid 10 from 2,7-dibromo-9,9-dihexylfluorene 9 is reported. Cross-coupling of 10 with two equivalents of 2-bromopyrimidine, 5-bromopyrimidine and 2,5-dibromopyrimidine gave 2,7-bis(2-pyrimidyl)-9,9-dihexylfluorene 13. 2,7-bis(5-pyrimidyl)-9,9-dihexylfluorene 14 and 2,7-bis(5-bromo-2-pyrimidyl)-9,9-dihexylfluorene 15 in 23-34% yields. A further two-fold Suzuki reaction of benzeneboronic acid with compound 15 gave 2,7-bis(5-phenyl-2-pyrimidyl)-9,9-dihexylfluorene 16 (35% yield). Ab initio calculations of the geometries and electronic structures at the Hartree Fock (HF) and density functional theory (DFT) levels of theory are reported for compounds 13, 14 and 16 (with ethyl substituents replacing hexyl) and for their dipyrazinyl and bistetraazenyl analogues, 17, 18, 20 and 21. The heterocyclic nitrogen atoms of 13 and 16 facilitate planarisation of the system, compared to 14, which is in agreement with X-ray structural data obtained for 5-bromo-2-phenylpyrimidine 6, 2,5-diphenylpyrimidine 7 and compound 15. Bistetrazenyl derivative 21 is calculated to be a fully planar system. The cyclic voltammogram (CV) of compound 16 in dichloromethane solution shows a quasi-reversible oxidation wave at E(1/2)0 = +1.36 V (vs. Ag/Ag+). Compound 13 is a poorer donor with an oxidation observed at Epa = +1.50 V which is in good agreement with the difference in the energies of their HOMO orbitals calculated at both HF and DFT levels of theory (0.11-0.12 eV). For compound 14 we were not able to measure an Eox potential which should lie at much more positive potentials. Compounds 15 and 16 are blue emitters in solution, with photoluminescence quantum yields (PLQY) of 25% and 85%, respectively. For thin films of 16 the PLQY is reduced to 21%. An OLED using compound 16 as the emissive layer has been fabricated in the configuration ITO/PEDOT/16/Ca/Al: blue-green light (lambda max 500 nm) most likely emanating primarily from excimer states is emitted at a high turn-on voltage.     

A general preparation of pyridines and pyridones via the annulation of ketones and esters

A general preparation of pyridines 4a-f from stabilized ketones 3a-c and aryl ketones 3d-f is described. The annulation of stabilized esters 3g,h gives access to the corresponding 2-pyridones 4g,h. The annulation reactions proceed in fair to excellent yields (46-87%) with vinamidinium hexafluorophosphate salts 2a-d containing electron-withdrawing groups at the beta-position. The mechanism of the reaction was investigated by NMR and proceeds through the formation of a dienaminone intermediate.     

The coordination chemistry of simple phospholes: Complexes of nickel(II), palladium(II) and platinum(II)

The reactions between four very simply substituted phospholes and the chlorides of Ni(II), Pd(II) and Pt(II) are described. The phospholes 1-phenylphosphole, 3-methyl-1-phenyl-phosphole and 3,4dimethyl-1-phenylphosphole all readily form bis-complexes of formula L₂MCl₂ [L = phosphole ligand and M = Ni(II), Pd(II) or Pt(II)] or tris-complexes of formula L₃MCI₂. 1-n-Butyl-3,4-dimethylphosphole appears to form stable complexes only with Ni(II). Evidence is put forward which indicates that the L₂MCl₂ complexes exist in a four-coordinate, square-planar monomeric/five coordinate equilibrium while the L₃MCl₂ complexes are primarily the ionic species [L₃MCl]⁺ Cl^? in solution. Comparisons are made with the behaviour of other simple phospholes which do not form Ni(II) complexes and the results are discussed briefly in terms of both aromatic and non-aromatic phosphole models.