Development of a Novel Electrochemical Biosensor for Detection and Discrimination of DNA Sequence and Single Base Mutation in dsDNA Samples Based on PNA‐dsDNA Hybridization – a new Platform Technology

In spite of the extensive attention paid on the development of various DNA detection strategies, very few studies have been reported regarding direct detection of DNA sequence and mutation in dsDNA. Here, we describe the feasibility of detection and discrimination of target DNA sequences and single base mutations (SBM) directly in double‐stranded oligonucleotides and PCR products without the need for denaturation of the target dsDNA samples. This goal was achieved by employing a peptide nucleic acid (PNA) chain, self‐assembled on the gold electrode as a probe, which binds to dsDNA and forms PNA‐dsDNA hybrid.     

Solvent‐free synthesis of new 2,4,6‐triarylpyridines catalyzed by a Brønsted acidic ionic liquid as a green and reusable catalyst

Some new 4‐(aryl)‐2,6‐di‐2‐naphthylpyridines and 4‐(aryl)‐2,6‐di‐2‐thienylpyridines have been prepared through three‐component condensation of 2‐acetylnaphthalene or 2‐acetylthiophene, aromatic aldehydes, and ammonium acetate in presence of 1‐(4‐sulfonylbutyl) pyridinium hydrogensulfate [(CH₂)₄SO₃HPy][HSO₄], a Brønsted acidic ionic liquid as a green and reusable catalyst in solvent‐free conditions. Also some new 4,4'‐(1,4‐phenylene)‐bis‐(2,6‐di‐aryl pyridine) was prepared. J. Heterocyclic Chem., (2011).     

Study of cure kinetics of epoxy/DDS/nanosized (SiO2/TiO2) system by dynamic differential scanning calorimetry

In this study the curing kinetics of epoxy based on the diglycidyl ether of bisphenol A (DGEBA), 4,4′‐diaminodiphenyl sulfone (DDS) as a hardener, and SiO₂/TiO₂ (70:30) as a nanofiller was investigated by nonisothermal differential scanning calorimetry (DSC). The effects of different weight contents of SiO₂/TiO₂ nanoparticles were studied using DSC in Dynamic Mode and the best value of the nanofiller was found to be 5 phr (parts per hundred). Dynamic measurements were used to obtain the total heat of reaction of the epoxy system as well as its activation energy (E_a) based on the isoconversional methods of Kissinger and Ozawa. The process revealed a dependence of the activation energy on conversion (α). The morphology of the cured system was investigated by scanning electron microscopy (SEM). It showed a strong cross‐linking between the resin and hardner and a relatively better dispersion of surface modified filler nanoparticles. Copyright © 2009 John Wiley & Sons, Ltd.     

Investigating the effect of nanolayered silicates on blend segmental dynamics and minor component relaxation behavior in poly(ethylene oxide)/poly(methyl methacrylate) miscible blends

Polymer–silicate nanocomposites based on poly (ethylene oxide), PEO, poly(methyl methacrylate), PMMA, and sodium montmorillonite clay were fabricated and characterized to investigate the effect of nanolayered silicates on segmental dynamics of PEO/PMMA blends. X‐ray results indicate the formation of an exfoliated morphology in the nanocomposites. At low silicate contents, an enhancement in segmental dynamics of blend nanocomposites and also PEO, minor component in blend, is observed at temperature region below blend glass transition. This result can be attributed to the improvement of the confinement effect of rigid PMMA matrix on the PEO chains by introducing a low amount of layered silicates. On the other hand, at high silicate contents, an enhancement in segmental dynamics of blend nanocomposites and PEO is observed at temperature region above blend glass transition. This behavior could be interpreted based on the reduction of monomeric friction between two polymer components, which can facilitate segmental motions of blend components in nanocomposite systems. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2011     

Kinetic and thermodynamic study of inter‐ and intramolecular proton transfer in N′‐acetyl formohydrazide tautomers

Nine tautomers and eleven possible tautomeric interconversions of N′‐acetyl formohydrazide have been studied at B3LYP/6‐311++G** level of theory. From these calculations, optimized geometries, molecular parameters, IR frequencies, NMR chemical shifts, and energetic results are obtained. In all tautomers except tautomers 4, E isomer is more stable than Z isomer. Energetic data were used to calculate the energy barriers of tautomeric interconversions and very high energy barriers were obtained for all tautomeric interconversions. Moreover, study of solvent effects on relative stabilities of tautomers and transition states showed that they are similar to those in the gas phase. In addition, intermolecular proton transfer with the assistance of one to three water molecules has been studied and the results showed that activation barriers in water‐assisted tautomerism are in general lower than those in the gas phase. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

A selective electromembrane extraction of uranium (VI) prior to its fluorometric determination in water

A novel method for the selective electromembrane extraction (EME) of U⁶⁺ prior to fluorometric determination has been proposed. The effect of extraction conditions including supported liquid membrane (SLM) composition, extraction time and extraction voltage were investigated. An SLM composition of 1% di-2-ethyl hexyl phosphonic acid in nitrophenyl octyl ether (NPOE) showed good selectivity, recovery and enrichment factor. The best performance was achieved at an extraction potential of 80 volts and an extraction time of 14 minutes Under the optimized conditions, a linear range from 1 to 1000 ng mL⁻¹ and LOD of 0.1 ng mL⁻¹ were obtained for the determination of U⁶⁺. The EME method showed good performance in sample cleanup and the reduction of the interfering effects of Mn²⁺, Zn²⁺, Cd²⁺, Ni²⁺, Fe³⁺, Co²⁺, Cu²⁺, Cl⁻ and PO₄³⁻ ions during fluorometric determination of uranium in real water samples. The recoveries above 54% and enrichment factors above 64.7 were obtained by the proposed method for real sample analysis.     

Cup-shaped E,E-stilbenophane: synthesis,crystal structure and supramolecular chemistry

A new E,E-stilbenophane was synthesised and characterised. The crystal structure of this cyclophane shows that this molecule has a cup-shaped structure, which hosts a phenyl ring of neighbouring molecule as guest in its cavity with a π–π distance of about 3.7 Å. Moreover, the NMR spectra and theoretical analysis (gauge-independent atomic orbitals (GIAO) and quantum theory of atoms in molecules (QTAIM)) suggest that the silver recognition by E,E-stilbenophane host molecules is based on cation–π interactions in which the π-electrons of the double bonds play a major role.     

Three-Component Reaction of Triphenylphosphine,Acetylenic Esters,and Arylsulfonyl Hydrazides or Aryl Hydrazines: An Efficient One-Pot Synthesis of Stable β-Nitrogen-Substituted Phosphorus Ylides

The three-component reaction between dialkyl acetylenedicarboxylates and triphenylphosphine in the presence of arylsulfonyl hydrazides or aryl hydrazines produces highly functionalized, salt-free phosphorus ylides in excellent yields.     

Synthesis, spectroscopy, electrochemistry and thermal study of vanadyl tridentate Schiff base complexes: theoretical study of the structures of compounds by ab initio calculations

The VO(IV) complexes of tridentate ONN Schiff ligands were synthesized and characterized by IR, UV–Vis and elemental analysis. The electrochemical properties of the vanadyl complexes were investigated by cyclic voltammetry. A good correlation was observed between the oxidation potentials and the electron-withdrawing character of the substituents on the Schiff base ligands, showing the following trend: MeO < H < Br < NO₂. The thermogravimetry (TG) and differential thermoanalysis (DTA) of the VO(IV) complexes were carried out in the range of 20–700 °C. The VOL¹(OH₂) and VOL²(OH₂) decomposed in three steps, whereas the VOL³(OH₂) and VOL⁴(OH₂) complexes decomposed in two steps. The thermal decomposition of these complexes is closely related to the nature of the Schiff base ligands and proceeds via first-order kinetics. The structures of compounds were determined by ab initio calculations. The optimized molecular geometry and atomic charges were calculated using MP2 method with 6-31G(d) basis. The results suggested that, in the complexes, V(IV) ion is in square-pyramid N₂O₃ coordination geometry. Also the bond lengths and angles were studied and compared.     

Spectrophotometric Determination of Acidity Constants of 4‐(2‐Pyridylazo) Resorcinol in Various Micellar Media Solutions

Dissociation equilibria of 4‐(2‐pyridylazo) resorcinol (PAR) in aqueous micellar solutions were determined spectrophotometrically at 25 °C and at the constant ionic strength I = 0.1 M KNO₃. For this purpose, the effect of nonionic (Brij‐35, Triton X‐100, Triton X‐114, Triton X‐405), and anionic (SDS) surfactants on the absorption spectra of PAR at different pH values was studied. Results show that the pK_a values and pure spectra of each species of PAR are influenced by percentages of a neutral and an anionic surfactant such as Brij‐35, Triton X‐100, Triton X‐114, Triton X‐405 and SDS, respectively, added to the solution of this reagent.