Physical Evidence of Stress-Induced Conformational Changes in Polymers

Background

Polymer mechanics and characterization is an active area of research where a keen effort is directed towards gaining a predictive and correlative relationship between the applied loads and the specific conformational motions of the macromolecule chains.

Objective

Therefore, the objective of this research is to introduce the preliminary results based on a novel technique to in situ probe the mechanical properties of polymers using non-invasive, non-destructive, and non-contact terahertz spectroscopy.

Methods

A dielectric elastomer actuator (DEA) structure is used as the loading mechanism to avoid obscuring the beam path of transmission terahertz time-domain spectroscopy. In DEAs, the applied voltage results in mechanical stresses under the active electrode area with far-reaching stretching in the passive area. Finite element analysis is used to model and simulate the DEA to quantify the induced stresses at the observation site over a voltage range spanning from 0 V to 3000 V. Additionally, a novel analysis technique is introduced based on the Hilbert-Huang transform to exploit the time-domain signals of the ultrathin elastomeric film and to defy the limits set forth by the current state-of-the-art analysis techniques.

Results

The computational result shows a nonlinear relationship between the effective stresses and the applied voltage. Analysis of the terahertz time-domain signals shows a shift in the delay times and a decrease in signal peak amplitudes, whereas these characteristics are implicitly related to the change in the index of refraction.

Conclusions

In all, the results evidentially signify the interrelationship between the conformational changes and applied mechanical stress.

     

A nanocomposite prepared from FeOOH and N-doped carbon nanosheets as a peroxidase mimic,and its application to enzymatic sensing of glucose in human urine

A method is described for the synthesis of a nanocomposite containing FeOOH and N-doped carbon nanosheets. The nanocomposite was synthesized by a hydrothermal method using a Fe₃O₄/chitosan nanocomposite as the precursor. The nanocomposite displays peroxidase-like activity and catalyzes the oxidation of 3,3′,5,5′-tetramethylbenzidine (TMB) by H₂O₂. This results in the formation of a blue colored product with an absorption maximum at 652 nm in the UV-vis spectra. Based on these findings, colorimetric assays were worked out for both hydrogen peroxide and glucose. The H₂O₂ assay works in the 5 to 19 μM concentration range, and the limit of detection is 5 nM. The glucose assay works in the 8 μM to 0.8 mM concentration range and has a 0.2 μM detection limit. The method was successfully applied to the determination of glucose in human urine.

Open image in new window

Graphical abstract Schematic of the hydrothermal synthesis of a FeOOH/N-doped carbon nanocomposite. It was used to replace peroxidase enzyme for the catalytic oxidation of 3,3′,5,5′-tetramethylbenzidine (TMB) in a visual colorimetric test for glucose in human urine.

     

The β‐Agostic Structure in (C5Me5)2Sc(CH2CH3): Solid‐State NMR Studies of (C5Me5)2Sc−R (R=Me,Ph, Et)

Multinuclear solid‐state NMR studies of Cp*₂Sc?R (Cp*=pentamethylcyclopentadienyl; R=Me, Ph, Et) and DFT calculations show that the Sc?Et complex contains a β‐CH agostic interaction. The static central transition ⁴⁵Sc NMR spectra show that the quadrupolar coupling constants (C_q) follow the trend of Ph≈Me>Et, indicating that the Sc?R bond is different in Cp*₂Sc?Et compared to the methyl and phenyl complexes. Analysis of the chemical shift tensor (CST) shows that the deshielding experienced by Cβ in Sc?CH₂CH₃ is related to coupling between the filled σ_C‐C orbital and the vacant orbital.     

Carbon-coated LiFePO4–carbon nanotube electrodes for high-rate Li-ion battery

Journal of Solid State Electrochemistry - Olivine LiFePO4 (LFP) is a promising cathode material for high-rated lithium-ion batteries. However, olivine faced a severe disadvantage of low...     

Crystal structure of cis-[Ru(bpy)2{PMe(o-tol)2}Cl+][ClO−4]: Steric effects in some PMen(o-tol)3−n (n = 1-3) derivatives of ruthenium(II)

The complex cis-[Ru(bpy)₂{PMe(o-tol)₂}Cl⁺][ClO^– ₄] crystallizes in space group P2₁/c witha = 9.375(2) Å, b = 22.019(7) Å, c = 16.153(4) Å, = 90.83(2)°, V = 3333.9(16) ų and D(calc'd) = 1.547 g/cm³ for Z = 4. The Ru-PMe(o-tol)₂ bond length of 2.357(3) Å is significantly longer than distances of Ru-PMe₂(o-tol) = 2.324(2) Å and Ru-PMe₃ = 2.310(2) Å in analogous complexes. The corresponding Ru-P(o-tol)₃ complex has eluded synthesis, probably due to steric hindrance.     

Hydrogen bond networks determine emergent mechanical and thermodynamic properties across a protein family

Background

Gram-negative bacteria use periplasmic-binding proteins (bPBP) to transport nutrients through the periplasm. Despite immense diversity within the recognized substrates, all members of the family share a common fold that includes two domains that are separated by a conserved hinge. The hinge allows the protein to cycle between open (apo) and closed (ligated) conformations. Conformational changes within the proteins depend on a complex interplay of mechanical and thermodynamic response, which is manifested as an increase in thermal stability and decrease of flexibility upon ligand binding.

Results

We use a distance constraint model (DCM) to quantify the give and take between thermodynamic stability and mechanical flexibility across the bPBP family. Quantitative stability/flexibility relationships (QSFR) are readily evaluated because the DCM links mechanical and thermodynamic properties. We have previously demonstrated that QSFR is moderately conserved across a mesophilic/thermophilic RNase H pair, whereas the observed variance indicated that different enthalpy-entropy mechanisms allow similar mechanical response at their respective melting temperatures. Our predictions of heat capacity and free energy show marked diversity across the bPBP family. While backbone flexibility metrics are mostly conserved, cooperativity correlation (long-range couplings) also demonstrate considerable amount of variation. Upon ligand removal, heat capacity, melting point, and mechanical rigidity are, as expected, lowered. Nevertheless, significant differences are found in molecular cooperativity correlations that can be explained by the detailed nature of the hydrogen bond network.

Conclusion

Non-trivial mechanical and thermodynamic variation across the family is explained by differences within the underlying H-bond networks. The mechanism is simple; variation within the H-bond networks result in altered mechanical linkage properties that directly affect intrinsic flexibility. Moreover, varying numbers of H-bonds and their strengths control the likelihood for energetic fluctuations as H-bonds break and reform, thus directly affecting thermodynamic properties. Consequently, these results demonstrate how unexpected large differences, especially within cooperativity correlation, emerge from subtle differences within the underlying H-bond network. This inference is consistent with well-known results that show allosteric response within a family generally varies significantly. Identifying the hydrogen bond network as a critical determining factor for these large variances may lead to new methods that can predict such effects.     

Thermal decomposition of methyl butanoate: ab initio study of a biodiesel fuel surrogate

In this paper, we report a detailed analysis of the breakdown kinetic mechanism for methyl butanoate (MB) using theoretical approaches. Electronic structures and structure-related molecular properties of reactants, intermediates, products, and transition states were explored at the BH&HLYP/cc-pVTZ level of theory. Rate constants for the unimolecular and bimolecular reactions in the temperature range of 300-2500 K were calculated using Rice-Ramsperger-Kassel-Marcus and transition state theories, respectively. Thirteen pathways were identified leading to the formation of small compounds such as CH(3), C(2)H(3), CO, CO(2), and H(2)CO. For the initial formation of MB radicals, H, CH(3), and OH were considered as reactive radicals participating in hydrogen abstraction reactions. Kinetic simulation results for a high temperature pyrolysis environment show that MB radicals are mainly produced through hydrogen abstraction reactions by H atoms. In addition, the C(O)OCH(3) = CO + CH(3)O reaction is found to be the main source of CO formation. The newly computed kinetic sub-model for MB breakdown is recommended as a core component to study the combustion of oxygenated species.     

An expedient synthesis of the fibril binding compound FSB via sequential Pd-catalyzed coupling reactions

The styryl benzene derivative (E, E)-1-fluoro-2,5-bis(3-hydroxycarbonyl-4-hydroxy)styrylbenzene (FSB), well-known for its binding to beta-amyloid peptide fibrils, was synthesized in an efficient manner exploiting two sequential palladium(0)-catalyzed coupling reactions in a 34% overall yield. This is a substantial improvement to the previously reported synthesis of FSB in 1.1%.     

Isolation and crystallographic characterization of solvate- and anion-stabilized PCP pincer complexes of palladium(II)

Pincer PCP-Pd(II) complex [PdCl(PCP)] (1) (PCP = ^?CH(CH₂CH₂PPh₂)₂) reacts with AgNO₃ to give [Pd(NO₃)(PCP)] (2). Similar reaction with AgBF₄ gives the aqua complex [Pd(OH₂)(PCP)][BF₄] (3) and the dinuclear complex [{Pd(PCP)}₂(μ-Cl)][BF₄] (4) with singly bridging chloro ligand. All new complexes were characterized by NMR spectroscopy, ESI-MS and single-crystal X-ray diffraction. Complex 1 and the triflate complex [Pd(OTf)(PCP)] (5) are active towards Suzuki–Miyaura coupling between aryl bromides and phenyl boronic acid.     

Front Cover: Enhancement of dielectrophoresis-based particle collection from high conducting fluids due to partial electrode insulation

Dielectrophoresis (DEP) is a successful method to recover nanoparticles from different types of fluid. The DEP force acting on these particles is created by an electrode microarray that produces a nonuniform electric field. To apply DEP to a highly conducting biological fluid, a protective hydrogel coating over the metal electrodes is required to create a barrier between the electrode and the fluid. This protects the electrodes, reduces the electrolysis of water, and allows the electric field to penetrate into the fluid sample. We observed that the protective hydrogel layer can separate from the electrode and form a closed domed structure and that collection of 100 nm polystyrene beads increased when this occurred. To better understand this collection increase, we used COMSOL Multiphysics software to model the electric field in the presence of the dome filled with different materials ranging from low-conducting gas to high conducting phosphate-buffered saline fluids. The results suggest that as the electrical conductivity of the material inside the dome is reduced, the whole dome acts as an insulator which increases electric field intensity at the electrode edge. This increased intensity widens the high-intensity electric field factor zone resulting in increased collection. This informs how dome formation results in increased particle collection and provides insight into how the electric field can be intensified to the increase collection of particles. These results have important applications for increasing the recovery of biologically-derived nanoparticles from undiluted physiological fluids that have high conductance, including the collection of cancer-derived extracellular vesicles from plasma for liquid biopsy applications.