Enhancement of phosphoprotein analysis using a fluorescent affinity tag and mass spectrometry

A fluorescent affinity tag (FAT) was synthesized and was utilized to selectively modify phosphorylated serine and threonine residues via beta-elimination and Michael addition chemistries in a 'one-step' reaction. This labeling technique was used for covalent modification of both phosphoproteins and phosphopeptides, allowing identification of these molecular species by fluorescence imaging after solution- or gel-based separation methods. In addition to the strong fluorescence of the rhodamine tag, a commercially available antibody can be used to enrich low-abundance post-labeled phosphopeptides present in complex mixtures. Application of this methodology to phosphorylation-site mapping has been evaluated for a phosphoprotein standard, bovine beta-casein. Initial results demonstrated low femtomole detection limits after fluorescence image analysis of FAT-labeled proteins or peptides.     

Overview: recent progress in three-dimensional atom probe instruments and applications.

Over the last few years there have been significant developments in the field of three-dimensional atom probe (3DAP) analysis. This article reviews some of the technical compromises that have led to different instrument designs and the recent improvements in performance. An instrument has now been developed, based around a novel reflectron configuration combining both energy compensation and focusing elements, that yields a large field of view and very high mass resolution. The use of laser pulsing in the 3DAP, together with developments in specimen preparation methods using a focused ion-beam instrument, have led to a significant widening in the range of materials science problems that can be addressed with the 3DAP. Recent studies of semiconductor materials and devices are described.     

Rates of base-catalysed cleavage of pyridyl-, quinolyl-, picolyl- and (quinolylmethyl)-trimethylsilanes

Rates of cleavage of some picoyl- and (quinolylmethyl)-trimethylsilanes (RSiMe₃, where R = PyCH₂ or QnCH₂SiMe₃) have been measured in “90%” aqueous methanolic sodium methoxide at 50°C. Relative reactivities are: 2-PyCH₂, 1.0; 3-PyCH₂, 0.030; 4-PyCH₂, 8.9; 2-QnCH₂, 41; 3-QnCH₂, 0.161; 4-QnCH₂, 37. The rates correlate well with those for base-catalysed hydrogen-exchange in the parent carbon acids RH. Approximate pK_a's (based on the scale of ion-pair acidities in CsNHC₆H₁₁H₂NC₆H₁₁, with pK_a of 9-phenylfluorene = 18.6) for the carbon acids, RH, can be derived as follows: 2-PyCH₃, 29.5; 3-PyCH₃, 34; 4-PyCH₃, 27; 2-QnCH₃, 25; 3-QnCH₃, 32; 4-QnCH₃, 25.Rates of cleavage of pyridyl- and quinolyl-trimethylsilanes (PySiMe₃ and QnSiMe₃) by sodium hydroxide in 4 : 1 v/v Me₂SO/H₂O at 50°C have also been measured; and the relative reactivities are: 2-Py, 1.0; 3-Py, 2.9; 4-Py, 8.4; 2-Qn, 15.9; 3-Qn, 12.7; 4-Qn, 184. The sequence of reactivity differes from that for base-catalysed hydrogen-exchange at the relevant positions of pyridine and quinoline, indicating that the reactivities are not determined in both cases (if in either) solely by the stabilities of the corresponding carbanions.     

Theory of chirality functions,generalized for molecules with chiral ligands

The theory of chirality functions described in a previous publication is generalized to allow for chiral ligands. In the earlier theory, all symmetry operations of the molecular frame could be thought of as permutations of the ligands among the sites; in the present work, improper rotations not only permute the ligands, but convert them into mirror images. The group that generates all isomers from a given ordered molecule belonging to a frame with n sites is now the hyperoctahedral group of order 2ⁿ n! consisting of all possible combinations of permutations and site reflections. The representation theory of these groups is described, and applied to the problem of constructing qualitatively complete chirality functions, and of deciding which ligand partitions, and which isomer mixtures, are chiral. It is found useful to classify chiral representations of the covering group as ligand specific and class specific. The ligand specific representations describe chiral properties which are common to all frames and arise purely from the chirality of the ligands, while the class specific representations describe the chiral properties of the frame. A number of examples are explicitly worked out.     

Zur Thermochemie der Zinnhalogenide

The enthalpy change of the reaction at 298 K between Br₂ (l) and Sn(c) in CS₂ as solvent giving SnBr₄ (s) has been determined by calorimetry to be (?374, 2±1.4) kJ·mol^?1, [(?89.45±0.33) kcal·mol^?1]. By the same method the heat of solution of SnBr₄ (c) in CS₂ has been found to be (11.9±0.3) kJ·mol^?1, [(2.84±0.08) kcal·mol^?1]. Combining these results, a value of (?386.1±1.5) kJ·mol^?1, [(?92.3±0.4) kcal·mol^?1] is derived for the standard heat of formation of SnBr₄ (c). Substituting this figure in the thermochemical cycle hitherto used for calculating the heat of formation of SnBr₄ (c) gives ?124.3 kcal·mol^?1 for the standard heat of formation of SnCl₄ (l), which is in reasonable agreement with a recent determination of this quantity⁸.     

Zur Chemie der Selen-Stickstoffverbindungen, 2. Mitt.

Zusammenfassung Darstellung und Eigenschaften von Ammonium-, Kalium-, Silber- und Thalliumsalzen des Triselenimides und der Diimidotriselensäure werden beschrieben, Infrarot-Spektren sowieDebye-Scherrer-Diagramme einiger dieser erstmalig dargestellten Verbindungen werden zu ihrer Charakterisierung mitgeteilt.Mit 3 Abbildungen1. Mitt.:A. Engelbrecht undF. Clementi, Mh. Chem.92, 555 (1961).     

Mössbauer and molecular orbital study of the myoglobin-CO complex

Experimental Mössbauer spectra of the Fe⁵⁷-enriched CO complex of sperm whale myoglobin (MbCO) at T= 4.2 K with and without applied magnetic field (H⊥γ) were measured to derive the sign of the electric field gradient (EFG), the quadrupole splitting ΔE _Q, and the isomer shift δ of the heme iron. We find a positive EFG, δE _Q = 0.363 mm/sec, and δ + 0.266 mm/sec. Molecular orbital calculations were carried out to obtain theoretical estimates of EFG and ΔE _Q for several steric arrangements of the CO ligand relative to the heme group. Our results are most consistent with the conclusion that the iron is situated in the heme plane, and that a bent geometry with a Fe-C-O angle of about 135 ° is more favorable than a more symmetric structure with a linear Fe-C-O geometry.     

Die Struktur des Paucins

Zusammenfassung Beim Abbau von Paucin wird Brenzcatechin, Kaffeesäure und Putrescin erhalten. Daraus und aus spektroskopischen Befunden ergibt sich für das Paucin die Strukturformel3.

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The structure of Paucine

Paucine can be degradated to catechol, caffeic acid and putrescine. This together with spectroscopic data allows us to deduce formula3 for paucine.

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Mit 6 Abbildungen

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Meinem Lehrer, Prof. Dr.H. Bretschneider, zum 65. Geburtstag gewidmet.