Adiabatic treatment of inelastic deuteron-nucleus scattering

Inelastic scattering of 80 MeV deuterons from ⁵⁸Ni and ¹²⁰Sn is analyzed in terms of an adiabatic coupled-channels Born approximation (ACCBA) method. The ACCBA method is a practical means to treat deuteron plus nucleus as a three-body system. Inclusion of the breakup modes significantly reduces the inelastic cross section. The significance of considering both the s-wave and d-wave breakup modes is pointed out.     

A bovine glucuronidase for assembly of beta-D-glucuronyl-(1-3)-6-O-sulfo-beta-D-gluco- and galacto-pyranosyl linkages

Glucuronidase-catalyzed transglycosylation was examined by using 4-nitrophenyl beta-D-glucuronide (D-GlcA-O-pNP) as the glycosyl donor; when pNP 6-O-sulfo-beta-D-gluco- and D-galacto-pyranosides were used as the acceptors, a bovine enzyme was found to construct beta-D-GlcA-(1-3)-linkages with the 6-O-sulfo-sugars in both a site- and beta-selective way.     

Semi-tilting Modules and Mutation

We introduce the notion of semi-tilting modules and show that the class of basic semi-tilting modules is closed under mutation. Using this, we provide a partial answer to the Wakamatsu tilting conjecture. Also, we define a partial order on the set of equivalence classes of semi-tilting modules and show that this order is closely related to mutation for semi-tilting modules.     

Contrast analysis of Shockley partial dislocations in 4H-SiC observed by synchrotron Berg–Barrett X-ray topography

Shockley partial dislocations in 4H-SiC were observed using monochromatic synchrotron X-ray topography with a grazing-incidence Bragg-case geometry, that is, Berg–Barrett topography. The contrast of partial dislocations at the edges of Shockley-type stacking faults is discussed in terms of whether they have C- or Si-core edge components, or screw components. The dissociated state of basal-plane dislocation is discussed on a basis of the stacking sequence for basal-planes in the 4H-SiC crystal structure. It is expected that the results obtained in this study will be useful for characterizing Shockley-type stacking faults in Berg–Barrett topography.     

On Partial Tilting Complexes

Let R be a commutative noetherian ring and A a noetherian R-algebra. Let P ^? ∈ 𝒦^b(𝒫 _A ) with Hom_𝒦(Mod-A)(P ^?, P ^?[i]) = 0 for i > 0. We will provide a sufficient condition for P ^? to be a direct summand of a silting complex. Also, in case Hom_𝒦(Mod-A)(P ^?, P ^?[i]) = 0 for i ≠ 0, we will provide a sufficient condition for P ^? to be a direct summand of a tilting complex.     

Laminar–Turbulent Intermittency in Annular Couette–Poiseuille Flow: Whether a Puff Splits or Not

Direct numerical simulations were carried out with an emphasis on the intermittency and localized turbulence structure occurring within the subcritical transitional regime of a concentric annular Couette–Poiseuille flow. In the annular system, the ratio of the inner to outer cylinder radius is an important geometrical parameter affecting the large-scale nature of the intermittency. We chose a low radius ratio of 0.1 and imposed a constant pressure gradient providing practically zero shear on the inner cylinder such that the base flow was approximated to that of a circular pipe flow. Localized turbulent puffs, that is, axial uni-directional intermittencies similar to those observed in the transitional circular pipe flow, were observed in the annular Couette–Poiseuille flow. Puff splitting events were clearly observed rather far from the global critical Reynolds number, near which given puffs survived without a splitting event throughout the observation period, which was as long as 104 outer time units. The characterization as a directed-percolation universal class was also discussed.     

Force field parameters for rotation around chi torsion axis in nucleic acids

To raise the accuracy of the force field for nucleic acids, several parameters were elaborated, focusing on the rotation around chi torsion axis. The reliability of molecular dynamics (MD) simulation was significantly increased by improving the torsion parameters at C8--N9--C1'--X (X = H1', C2', O4') in A, G and those at C6--N1--C1'--X in C, T, and U. In this work, we constructed small models representing the chemical structure of A, G, C, T, and U, and estimated energy profile for chi-axis rotation by executing numerous quantum mechanical (QM) calculations. The parameters were derived by discrete Fourier transformation of the calculated QM data. A comparison in energy profile between molecular mechanical (MM) calculation and QM one shows that our presently derived parameters well reproduce the energy surface of QM calculation for all the above torsion terms. Furthermore, our parameters show a good performance in MD simulations of some nucleic acids. Hence, the present refinement of parameters will enable us to perform more accurate simulations for various types of nucleic acids.     

Average electron tunneling route of the electron transfer in protein media

We present a new theoretical method to determine and visualize the average tunneling route of the electron transfer (ET) in protein media. In this, we properly took into account the fluctuation of the tunneling currents and the quantum-interference effect. The route was correlated with the electronic factor in the case of ET by the elastic tunneling mechanism. We expanded by the interatomic tunneling currents 's. Incorporating the quantum-interference effect into the mean-square interatomic tunneling currents, denoted as , we could express as a sum of variant Planck's over 2pi(2). Drawing the distribution of on the protein structure, we obtain the map which visually represents which parts of bonds and spaces most significantly contribute to . We applied this method to the ET from the bacteriopheophytin anion to the primary quinone in the bacterial photosynthetic reaction center of Rhodobacter sphaeroides. We obtained 's by a combined method of molecular dynamics simulations and quantum chemical calculations. In calculating , we found that much destructive interference works among the interatomic tunneling currents even after taking the average. We drew the map by a pipe model where atoms a and b are connected by a pipe with width proportional to the magnitude of . We found that two groups of 's, which are mutually coupled with high correlation in each group, have broad pipes and form the average tunneling routes, called Trp route and Met route. Each of the two average tunneling routes is composed of a few major pathways in the Pathways model which are fused at considerable part to each other. We also analyzed the average tunneling route for the ET by the inelastic tunneling mechanism.