Interference, fluctuation, and alternation of electron tunneling in protein media. 2. Non-condon theory for the energy gap dependence of electron transfer rate

Developing the quantum transition rate theory of Prezhdo and Rossky (J. Chem. Phys. 1997, 107, 5863), we produced a new non-Condon theory of the rate of electron transfer (ET) which happens through a protein medium with conformational fluctuation. The new theory is expressed by a convolution form of the power spectrum for the autocorrelation function of the electronic tunneling matrix element T(DA)(t) with quantum correction and the ordinary Franck-Condon factor. The new theory satisfies the detailed balance condition for the forward and backward ET rates. The ET rate formula is divided into two terms of elastic and inelastic tunneling mechanisms on the mathematical basis. The present theory is applied to the ET from Bph(-) to Q(A) in the reaction center of Rhodobacter sphaeroides. Numerical calculations of T(DA)(t) were made by a combined method of molecular dynamics simulations and quantum chemistry calculations. We showed that the normalized autocorrelation function of T(DA)(t) is almost expressed by exponential forms. The calculated energy gap law of the ET rate is nearly Marcus' parabola in most of the normal region and around the maximum region, but it does not decay substantially in the inverted region, which is called the anomalous inverted region. We also showed that the energy gap law at the high uphill energy gap in the normal region is elevated considerably from the Marcus' parabola, which is called the anomalous normal region. Those anomalous energy gap laws are due to the inelastic tunneling mechanism which works actively at the energy gap far from zero. We presented an empirical formula for easily calculating the non-Condon ET rate, which is usable by many researchers. We provided experimental evidence for the anomalous inverted region which was basically reproduced by the present theory. The present theory was extensively compared with the previous non-Condon theories.     

Stabilization of enhanced chirality from pyrene-containing l-glutamide lipid in methyl methacrylate by photo-induced polymerization

Enhanced CD spectra based on chirally-oriented structures of pyrene-containing L-glutamic acid-derived lipid were observed in polymerizable monomers and CD strength was maintained after photo-induced polymerization of the monomer solvents.     

Dissolution behavior of homologously generated surfactant molecular complexes (SMC) in aqueous media: A clue to the elucidation of the phenomenon "solubilization"

The solution behavior of homologously obtained crystalline surfactant molecular complexes (SMCs) that are generated between quaternary ammonium bromide and several additive materials has shed light on the recognition of fundamentals of solubilization. It has been revealed that the SMCs derived from long-alkyl-chain surfactants are sufficiently dissolved in water through the path of micellar dispersion above the cmc's of the complex surfactants, whereas the short-chain homologues cannot dissolve in water but dissociate the complexes, resulting in a heterogeneous phase made up of the liberated additives. The fact agrees perfectly with the familiar aspects of solubilization by surfactant; i.e., the longer the alkyl chain of the surfactant becomes, the more effective it is for solubilization. Based on these results, it has been deduced that the possibility for any pair of surfactant and solubilizate (additive) to realize solubilization simply depends on the relative importance of equilibrium of dissociation or association of the SMC species in aqueous medium.     

Probing the Rotational Dynamics of meso‐(2‐Substituted)aryl Substituents in A2B‐Type Subporphyrins

A₂B‐type B‐methoxy subporphyrins 3 a – g and B‐phenyl subporphyrins 7 a – c , e , g bearing meso‐(2‐substituted)aryl substituents are synthesized, and their rotational dynamics are examined through variable‐temperature (VT) ¹H NMR spectroscopy. In these subporphyrins, the rotation of meso‐aryl substituents is hindered by a rationally installed 2‐substituent. The rotational barriers determined are considerably smaller than those reported previously for porphyrins. Comparison of the rotation activation parameters reveals a variable contribution of ΔH^≠ and ΔS^≠ in ΔG^≠. 2‐Methyl and 2‐ethyl groups of the meso‐aryl substituents in subporphyrins 3 e , 3 f , and 7 e induce larger rotational barriers than 2‐alkoxyl substituents. The rotational barriers of 3 g and 7 g are reduced by the presence of the 4‐dibenzylamino group owing to its ability to stabilize the coplanar rotation transition state electronically. The smaller rotational barriers found for B‐phenyl subporphyrins than for B‐methoxy subporphyrins indicate a negligible contribution of S_N1‐type heterolysis in the rotation of meso‐aryl substituents.     

Rational Design for Cooperative Recognition of Specific Nucleobases Using β‐Cyclodextrin‐Modified DNAs and Fluorescent Ligands on DNA and RNA Scaffolds

We propose a binary fluorimetric method for DNA and RNA analysis by the combined use of two probes rationally designed to work cooperatively. One probe is an oligonucleotide (ODN) conjugate bearing a β‐cyclodextrin (β‐CyD). The other probe is a small reporter ligand, which comprises linked molecules of a nucleobase‐specific heterocycle and an environment‐sensitive fluorophore. The heterocycle of the reporter ligand recognizes a single nucleobase displayed in a gap on the target labeled with the conjugate and, at the same time, the fluorophore moiety forms a luminous inclusion complex with nearby β‐CyD. Three reporter ligands, MNDS (naphthyridine–dansyl linked ligand), MNDB (naphthyridine–DBD), and DPDB (pyridine–DBD), were used for DNA and RNA probing with 3′‐end or 5′‐end modified β‐CyD – ODN conjugates. For the DNA target, the β‐CyD tethered to the 3′‐end of the ODN facing into the gap interacted with the fluorophore sticking out into the major groove of the gap site ( MNDS and DPDB ). Meanwhile the β‐CyD on the 5′‐end of the ODN interacted with the fluorophore in the minor groove ( MNDB and DPDB ). The results obtained by this study could be a guideline for the design of binary DNA/RNA probe systems based on controlling the proximity of functional molecules.     

Diffusion of non-volatile phenolic compounds in zeolite beta and silicalite in liquid phase

The present study aims to systematically investigate the adsorption kinetics of “non-volatile” phenolic compounds with different critical diameters (p-coumaric acid, ferulic acid, sinapinic acid, p-hydroxybenzoic acid, vanillic acid, syringic acid, and vanillin) onto zeolite beta and silicalite in several solvents. In the aqueous phase, the corrected diffusivity of non-volatile phenolic compounds is 2–5 orders of magnitude smaller than that of volatile aromatic compounds with the same critical diameter. On the other hand, the corrected diffusivity in zeolite beta is on the same order of magnitude among non-volatile phenolic compounds, despite the significant difference in critical diameter of the adsorbate. This suggests that the intracrystalline diffusivity of the non-volatile adsorbate is strongly affected by its original molecular immobility, rather than by the size (narrowness) of the adsorbate and micropore aperture. Non-volatility is considered to remarkably lower the molecular mobility of adsorbate on the surface of zeolite, even in the liquid phase. In addition, the intracrystalline diffusivity of non-volatile adsorbate is strongly affected by the type of solvent, and a close correlation was found between intracrystalline diffusivity and adsorption affinity. Revelations as to the kinetic behavior of non-volatile adsorbate in zeolite are expected to supply more information on the kinetic separation of compounds in the liquid phase. The significant difference in diffusivity among non-volatile and volatile adsorbates in zeolite leads to the possibility of kinetic separation among these adsorbates.     

Effect of controlling optical wavelength by spectacle lenses on visual quality

Optical Review - In this study, the effects of selectively yellow-cut lenses on contrast sensitivity were investigated in healthy young and middle-aged individuals and elderly patients with...     

Biological identification of peptides that specifically bind to poly(phenylene vinylene) surfaces: recognition of the branched or linear structure of the conjugated polymer

Peptides that bind to poly(phenylene vinylene) (PPV) were identified by the phage display method. Aromatic amino acids were enriched in these peptide sequences, suggesting that a π-π interaction is the key interaction between the peptides and PPV. The surface plasmon resonance (SPR) experiments using chemically synthesized peptides demonstrated that the Hyp01 peptide, with the sequence His-Thr-Asp-Trp-Arg-Leu-Gly-Thr-Trp-His-His-Ser, showed an affinity constant (7.7 × 10(5) M(-1)) for the target, hyperbranched PPV (hypPPV) film. This value is 15-fold greater than its affinity for linear PPV (linPPV). In contrast, the peptide screened for linPPV (Lin01) showed the reverse specificity for linPPV. These results suggested that the Hyp01 and Lin01 peptides selectively recognized the linear or branched structure of PPVs. The Ala-scanning experiment, circular dichroism (CD) spectrometry, and molecular modeling of the Hyp01 peptide indicated that adequate location of two Trp residues by forming the polyproline type II (P(II)) helical conformation allowed the peptide to specifically interact with hypPPV.