Practical synthesis of 2'-deoxy-4'-thioribonucleosides: substrates for the synthesis of 4'-thioDNA

We report herein a practical synthesis of 4'-thiothymidine (15) and appropriately protected 2'-deoxy-4'-thiocytidine (16), -thioadenosine (27), and -thioguanosine (29) derivatives, substrates for the synthesis of 4'-thioDNA, from the corresponding 4'-thioribonucleosides. 2'-deoxy-4'-thiopyrimidine nucleosides were synthesized using a radical reaction of the corresponding 2'-alpha-bromo derivatives, which were prepared via 2,2'-O-anhydro derivatives. 2'-deoxy-4'-thiopurine nucleosides were synthesized using the same radical reaction of the corresponding 2'-beta-bromo derivatives.     

Recent developments on creation of artificial metalloenzymes

Organic synthesis using biocatalysts has been developed over many years and is still a prominent area of research. In this context, various hybrid biocatalysts composed of a synthetic metal complex catalyst and a protein scaffold (i.e. “artificial metalloenzymes”) have been constructed. One of the most recent research areas in biocatalysts-mediated synthesis is CC bond/cleavage, the most important type of reaction in organic chemistry. Some of the artificial enzymes were applied to in-cell reactions as well as in vitro systems. The effects of the structural fluctuation in biomacromolecules on their functions have also been realized. This review article includes recent research examples of artificial metalloenzymes used to CC bond formation/cleavage. As a perspective, we also focus on how we apply protein dynamics factor for the creation of new generation artificial metalloenzymes.     

Synthesis of 2-chloro-1,1-difluoroallyl mesylates through novel rearrangement and CC bond formation by their Pd-catalyzed reaction with diethylzinc

Treatment of 2-chloro-3,3-difluoroprop-2-en-1-ol derivatives (2) with methanesulfonyl chloride in the presence of a base did not give the expected esters but 2-chloro-1,1-difluoroprop-2-enyl methanesulfonates (4) through a novel [3,3] sigmatropic rearrangement. Reaction of 4 with diethylzinc in the presence of tetrakis(triphenylphosphine) palladium gave 1-alkyl- or 1-aryl-2-chloro-3-fluoropenta-1,3-dienes in moderate to good yields through a CC bond formation followed by dehydrofluorination.     

Circular dichroism spectra of the inclusion complexes of phlorizin in cyclodextrins

Two aromatic rings of a phlorizin molecule form inclusion complexes with -CD and -CD. Induced circular dichroism spectra of these complexes have been measured to estimate the orientation of the two aromatic rings in the hydrophobic space of CDs. Apparent complex formation constants have been also estimated for each complex. It is concluded that phlorizin forms a stronger inclusion complex with -CD than with -CD.     

Kinetics of transient end-to-end contact of single-stranded DNAs

The formation of the pyrene (Py) dimer radical cation (Py(2)(*+)) was used to measure the kinetics of the intrastrand end-to-end contact rates of single-stranded DNAs (ssDNAs) in the 10 nanoseconds to the tens of microseconds time range. ssDNAs labeled with Py at both ends with the lengths of 3, 6, and 9 mer were synthesized, and the two-photon ionization method was employed to generate a Py(*+), which enables the measurements of the end-to-end contact rates from 10 ns. The formation rate of Py(2)(*+) depended on the length and the sequence of the ssDNAs, and about 1 order of magnitude faster rates were observed for the T-rich ssDNAs compared to those for the corresponding length of A-rich ssDNAs, showing that ssDNA made from adenines is much more rigid than that composed of thymidines. As for the T-rich ssDNAs, the formation of Py(2)(*+) attributed to the misfolded structures was also observed, which is consistent with the configurational diffusion model suggested by Ansari and co-workers.     

Competitive potentiometric determination of binding constants between α-cyclodextrin and 1-alkanols

The binding constants of 1-alkanols with α-cyclodextrin (α-CD) were determined by indirect competitive potentiometry, although potentiometry is usually inapplicable to nonionic compounds. This novel method utilizes competitive binding of 1-alkanol and octyltrimethylammonium bromide (OTAB) to α-CD in aqueous media, where the concentration of free OTAB depending on the competitive binding is monitored with an OTAB-selective electrode. Therefore, the concentration of 1-alkanol is indirectly estimated from the observed electromotive force. The binding constants of 1-propapnol, 1-butanol, 1-hexanol, and 1-octanol with α-CD, obtained by this method, are close to the literature values. The implications and limitations of this indirect competitive potentiometry were discussed.     

Synthetic studies on selective type 4 phosphodiesterase (PDE 4) inhibitors. 1. Structure-activity relationships and pharmacological evaluation of 1,8-naphthyridin-2(1H)-one derivatives

In order to develop novel and orally active phosphodiesterase (PDE) 4 inhibitors, random screening was performed using our chemical library to find YM-10335 possessing the 1,8-naphthyridin-2(1H)-one skeleton which is a completely different structure from rolipram. In this report, the syntheses and structure-activity relationships of the YM-10335 derivatives were described. Some compounds showed selective inhibitory activities for PDE 4 derived from human peripheral blood cells and no effect on the other PDE types (1, 2, 3, 5). The inhibition of the tumor necrosis factor-alpha (TNF-alpha) release in vitro and the carrageenan-induced pleurisy in rats were also described.     

The behaviour of dyes at oil/water interfaces

Summary The adsorption of ionic dyes, the builder effect, and the interaction between ionic dyes and surface active agents were investigated by using the electrocapillarity at oil/water interfaces. The oil phase was the solution of tetra-butylammonium chloride, sodium cetylsulphate, cetylpyridinium chloride or stearylamine in methylisobutylketone, and the water phase contained various dyes in addition to the inorganic electrolyte. The interfacial tension decreased over the anodic (or cathodic) polarization range, when anionic (or cationic) dyes were added to the water phase, thus indicating the dye adsorption at the interface. The interfacial excess of dye ions was found to increase linearly with the cubic roots of dye concentration and of ionic strength of the water phase. The counterion binding took place at the oil/water interface between anionic (or cationic) dyes and positive (or negative) head groups of surface active agent ions adsorbed at the interface. It was found that the equilibrium constants of binding between anionic dyes and cationic surface active agents at the oil/water interface were of the same order of magnitude as, and a little larger than, those obtained at the water bulk phase.

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Zusammenfassung An Öl-Wasser-Grenzflächen wurde die Adsorption ionischer Farbstoffe, die Füllerwirkung und die Wechselwirkung zwischen ionischen Farbstoffen und grenzflächenaktiven Verbindungen mit Hilfe der Elektrokapillarität untersucht. Die Ölphase bestand aus einer Lösung von Tetrabutylammoniumchlorid, Natriumcetylsulfat und Cetylpyridiniumchlorid oder Stearylamin in Methylisobutylketon. Die wässerige Phase enthielt verschiedene Farbstoffe und anorganische Elektrolyte. Die Grenzflächenspannung wurde durch anodische (bzw. kathodische) Polarisation erniedrigt, wenn anionischer (bzw. kationischer) Farbstoff zur Wasserphase gegeben wurde. Dies zeigt an, daß Farbstoff an der Grenzfläche adsorbiert wird. Die Grenzflächenkonzentration des Farbstoffions nimmt linear mit der Kubikwurzel der Farbstoffkonzentration und mit der Ionenstärke zu. Als Gegenionen für die anionischen (bzw. kationischen) Farbstoffe an der Grenzfläche wirken die positiven (bzw. negativen) Endgruppen der Tenside, die ebenfalls in der Grenzschicht adsorbiert sind. Die Gleichgewichtskonstanten für die Wechselwirkung zwischen den ionischen Farbstoffen und den grenzflächenaktiven Verbindungen sind an der Öl-Wasser-Grenzfläche von der gleichen Größenordnung bzw. geringfügig größer als in der wässerigen Volumenphase.

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With 12 figures and 2 tables     

1,1-bis(trimethylsilyl)-1-alkanols as silylcarbene equivalent

Silylcarbenes are generated by the pyrolysis of 1,1-bis(trimethylsilyl)-1-alkanols with elimination of trimethylsilanol.     

Studies of the polymerization of diallyl compounds. XXII. Polymerization of diallyl oxalate in the evolution of carbon dioxide at elevated temperatures

The polymerization of diallyl oxalate was conducted in the presence of radical initiators at a high temperature range of 80–180°C; a large decrease in degree of polymerization, an increase in residual unsaturation of the resulting polymer, and the evolution of carbon dioxide were observed with the elevation of temperature. These findings were reasonably interpreted by considering the dismutation of the uncyclized growing radical to yield the allyl radical, carbon dioxide, and polymer carrying a terminal double bond. The kinetics of the polymerization of diallyl oxalate in the evolution of carbon dioxide at elevated temperatures were also discussed in detail.