X-ray diffraction study of KOCN at room temperature

The room temperature structure of KOCN has been successfully refined in space group I4/mcm. The OCN anion is disordered through 180° head-tail flipping and the positional coordinates and displacement parameters could not be separated for the N and O end atoms. The displacement parameters are compared for isomorphous KOCN, KN₃ and KSCN.     

Practical synthesis of adenosine 3′,5′-cyclic monophosphorodithioate

Adenosine 3′,5′-cyclic monophosphorodithioate (cAMPS₂), which has two exocyclic sulfurs directly attached to phosphorus, was synthesized from adenosine phosphoramidite by intramolecular cyclization employing the phosphotriester method as a key step.     

Total Synthesis of (−)‐Haouamine B Pentaacetate and Structural Revision of Haouamine B

The enantiocontrolled total synthesis of (?)‐haouamine B pentaacetate was accomplished via an optically active indane‐fused β‐lactam, which was prepared by a newly developed Friedel–Crafts reaction. Subsequent cleavage of the β‐lactam and an intramolecular McMurry coupling reaction provided the core indane‐fused tetrahydropyridine, which led to the elucidation of the structure, as proposed by Trauner and Zubía.     

Reaction of Oxiranes with Dianions of Secondary Amides. New Entry to 5-Alkylsubstituted γ-LACTAMS

The oxirane ring cleavage with dilithiated secondary amides was accelerated by the addition of boron trifluoride-etherate to afford γ-hydroxyamides, which were transformed into 5-alkylsubstituted γ-lactams via an intramolecular N-alkylation reaction.     

Core Assembly Mechanism of Quinocarcin/SF-1739: Bimodular Complex Nonribosomal Peptide Synthetases for Sequential Mannich-type Reactions

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Synthesis,Structure, and Reactivities of Iminosulfane‐ and Phosphane‐Stabilized Carbones Exhibiting Four‐Electron Donor Ability

Iminosulfane(phosphane)carbon(0) derivatives (iSPCs; Ar₃P→C←SPh₂(NMe); Ar=Ph ( 1 ), 4‐MeOC₆H₄ ( 2 ), 4‐(Me₂N)C₆H₄ ( 3 )) have been successfully synthesized and the molecular structure of 3 characterized. Carbone 3 is the first thermally and hydrolytically stable carbone stabilized by phosphorus and sulfur ligands. DFT calculations reveal the electronic structures of 1 – 3 , which have two lone pairs of electrons at the carbon center. First and second proton affinity values are theoretically calculated to be in the range of 286.8–301.1 and 189.6–208.3 kcal mol^?1, respectively. Cyclic voltammetry measurements reveal that the HOMO energy levels follow the order of 3 > 2 > 1 and the HOMO of 3 is at a higher energy than those of bis(chalcogenane)carbon(0) (BChCs). The reactivities of these lone pairs of electrons are demonstrated by the C‐diaurated and C‐proton‐aurated complexes. These results are the first experimental evidence of phosphorus‐ and sulfur‐stabilized carbones behaving as four‐electron donors. In addition, the reaction of hydrochloric salts of the carbones with Ag₂O gives the corresponding Ag^I complexes. The resulting silver(I) carbone complexes can be used as carbone transfer agents. This synthetic protocol can also be used for moisture‐sensitive carbone species.     

Tunneling splitting of energy levels and rotational constants in the vinyl radical C2H3

The instanton theory newly implemented by two of the authors (G.V.M. and H.N.) is applied to hydrogen tunneling transfer in a vinyl radical. The converged instanton trajectory is found on the CCSD(T)/aug-cc-pVTZ level of an ab initio potential energy surface. The calculated ground-state energy splitting agrees with the recent high-resolution experimental data within 3% of discrepancy. The semiclassical wave function is used to estimate the splitting of the principal rotational constants of the radical.     

Performance of fast multipole methods for calculating electrostatic interactions in biomacromolecular simulations

The fast multipole method proposed by Greengard and Rokhlin (GR) is applied to large biomacromolecular systems. In this method, the system is divided into a hierarchy of cells, and electric field exerted on a particle is decomposed into two parts. The first part is a rapidly varying field due to nearby cells, so that it needs rigorous pairwise calculations. The second part is a slowly varying local field due to distant cells; hence, it allows rapid calculations through a multipole expansion technique. In this work, two additional possibilities for improving the performance are numerically examined. The first is an improvement of the convergence of the expansion by increasing the number of nearby cells, without including higher-order multipole moments. The second is an acceleration of the calculations by the particle–particle and particle–mesh/multipole expansion (PPPM/MPE) method, which uses fast Fourier transform instead of the hierarchy. For this purpose, the PPPM/MPE method originally developed by the authors for a periodic system is extended to a nonperiodic isolated system. The advantages and disadvantages of the GR and PPPM/MPE methods are discussed for both periodic and isolated systems. It is numerically shown that these methods with reasonable costs can reduce the error in potential felt by each particle to 0.1–1 kcal/mol, much smaller than the 30-kcal/mol error involved in conventional simple truncations. © 1994 by John Wiley & Sons, Inc.     

New parallel algorithm for MP2 energy gradient calculations

A new parallel algorithm has been developed for calculating the analytic energy derivatives of full accuracy second order Møller‐Plesset perturbation theory (MP2). Its main projected application is the optimization of geometries of large molecules, in which noncovalent interactions play a significant role. The algorithm is based on the two‐step MP2 energy calculation algorithm developed recently and implemented into the quantum chemistry program, GAMESS. Timings are presented for test calculations on taxol (C₄₇H₅₁NO₁₄) with the 6‐31G and 6‐31G(d) basis sets (660 and 1032 basis functions, 328 correlated electrons) and luciferin (C₁₁H₈N₂O₃S₂) with aug‐cc‐pVDZ and aug‐cc‐pVTZ (530 and 1198 basis functions, 92 correlated electrons). The taxol 6‐31G(d) calculations are also performed with up to 80 CPU cores. The results demonstrate the high parallel efficiency of the program. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2007     

Spectroscopy of HF and HF-containing clusters in solid parahydrogen

We report measurements of FT-IR absorption spectroscopy of HF, DF, and their clusters in solid parahydrogen (pH(2)). The observed spectra contain many absorption lines which were assigned to HF monomers, HF polymers, and clusters with other species, such as N(2), O(2), orthohydrogen (oH(2)), etc. The rotational constants of HF and DF monomers were determined from the cooperative transitions of the vibration of solid pH(2) and the rotation of HF and DF. Small reduction of the rotational constants indicates that HF and DF are nearly free rotors in solid pH(2). Time dependence of the spectra suggests that HF and DF monomers migrate in solid pH(2) and form larger polymers, probably via tunneling reactions through high energy barriers on inserting another monomer to the polymers. The line width of HF monomers in solid pH(2) was found to be 4 cm(-1), which is larger than that of other hydrogen halides in solid pH(2). This broad line width is explained by rapid rotational relaxation due to the accidental coincidence between the rotational energy of HF and the phonon energy with maximum density of states of solid pH(2) and the rotational-translational coupling in a trapping site.