Unbiased Rotational Motions of an Ellipsoidal Guest in a Tight Yet Pliable Host

In the design of machinery such as steel bearings, a fundamental understanding of material characteristics provides an indispensable basis for the design. Although hydrocarbon cycloarylenes have started to be used for providing unique supramolecular bearings with anomalous dynamic behaviors, their fundamental understanding is immature. A unique property of the cycloarylene host is now reported: the cyclic host is so pliable that it tracks the orientational changes of the ellipsoidal guest, that is, C₇₀ fullerene. Unique structures of the complex were revealed by spectroscopic and crystallographic analyses, and additional theoretical investigations deepened our understanding by revealing the structural changes associated with unbiased rotational motions.     

Highly polarized very cold neutrons through a permanent magnet quadrupole

We obtained highly polarized very cold neutrons through a quadrupole magnet with a large aperture. When neutrons go through a quadrupole magnet, parallel-spin neutrons are attracted to the magnet axis and anti-parallel-spin neutrons are repelled off the axis. Therefore, the neutrons through a sufficiently long quadrupole magnet have completely parallel-spin. At the downstream of the quadrupole magnet, we placed another quadrupole magnet to divide neutrons into two regions depending on their spin directions. We obtained the neutron polarization from the integrated count of the two regions and found it was 99.88±0.09 (stat.)±0.05 (syst.)%.     

Crystal structure of YBa2Cu3O7−x thin films prepared by pulsed laser deposition with substrate bias voltage

The crystal structure of YBa₂Cu₃O_7−x thin films has been investigated by cross-section transmission electron microscopy. The samples were deposited on MgO (100) substrates at 670°C with substrate bias voltages of ±300 V. For the unbiased case, c-axis, a-axis and (103) oriented domains normal to the substrate surface were observed. In this film, the c-axis oriented domains are dominant, but the crystal often exhibits a longer c-lattice constant than that of the YBa₂Cu₃O_7−x system, so extra cationic layers are inserted in the YBa₂Cu₃O_7−x intrinsic stacking sequence. For the case of −300 V, rotated domains were dominant in the entire film; however, c-axis oriented domains also grow from the substrate surface. Small-angle semicoherent grain boundaries between them were observed. In the case of +300 V, all the grains show c-axis oriented YBa₂Cu₃O_7−x. The degree of preferential orientation of the grains is reduced at negative bias voltage of −300 V and the structure defects are reduced by applying a positive bias of +300 V.     

Direct profiling of the phospholipid composition of adult <Emphasis Type="Italic">Caenorhabditis elegans</Emphasis> using whole-body imaging mass spectrometry

A protocol for the direct analysis of the phospholipid composition in the whole body of adult soil nematode, Caenorhabditis elegans (C. elegans), was developed, which combined freeze-cracking of the exoskeletal cuticle and matrix-assisted laser desorption/ionization-imaging mass spectrometry (MALDI-IMS). Biomolecules in the m/z range from 700 to 900 were more effectively detected in the freeze-cracked than from simple frozen adult nematode bodies. Different distribution of biomolecules was observed in a nematode body when the matrix was applied with a sublimation deposition method. The whole-body IMS technique was applied on genetically deficient mutant C. elegans to combine whole-body lipidomics and genetics, by comparing the fatty acid compositions, especially of the phosphatidylcholine (PC) species, between the wild-type and fat-1 mutants, which lack the gene encoding an n-3 fatty acid desaturase. A significant reduction of PC(20:5/20:5) and PC(20:4/20:5) and a marked increase of PC(20:4/20:4), PC(20:3/20:4), and PC(20:3/20:3) were detected in the fat-1 mutants in positive ion mode. In addition, phospholipid compositions other than PCs were analyzed in negative ion mode. A loss of a possible phosphatidylinositol (PI) with 18:0/20:5 and a compensative accumulation of putative PI(18:0/20:4) were detected in the fat-1 mutants. In conclusion, the whole-body MALDI-IMS technique is useful for the profiling of multiple biomolecules in C. elegans in both intra- and inter-individual levels.     

Explicit representation of anisotropic force constants for simulating intermolecular vibrations of multiply hydrogen-bonded systems

We investigated the mechanical nature of multiply hydrogen-bonded systems by means of ab initio quantum chemical calculations, and we derived a set of force constants to reproduce the anisotropic vibration modes of such systems. Twenty multiply hydrogen-bonded molecular dimers were selected for evaluation of the stiffness of their hydrogen bonds. By means of a multivariate analysis, the principal values of the stiffness tensor were divided into the contributions from each hydrogen bond. Force constants in the stretching directions were estimated to be 20.2 and 11.5 N m(-1) for NH...O and NH...N pairs, respectively. The obtained parameter set was used to reconstruct the various intermolecular vibration motions, and reasonable values in the low-frequency (ca. terahertz) region were obtained. Comparison of the multivariate analysis with the normal-mode analysis suggested that the off-diagonal terms for the transverse and rotational motions may appreciably contribute to the coupling of those basic motions.     

Combinational sensitization of Leishmania with uroporphyrin and aluminum phthalocyanine synergistically enhances their photodynamic inactivation in vitro and in vivo

Leishmania were previously shown to undergo photolysis when their transgenic mutants were induced endogenously to accumulate cytoplasmic uroporphyrin or when loaded exogenously with aluminum phthalocyanine chloride. A combinational use of both is reported here, which renders Leishmania far more susceptible to photolysis. Fluorescence microscopy of cells loaded with the two photosensitizers localized them to different subcellular sites. Pre-exposure of Leishmania to both synergistically sensitized them for photolysis as extracellular promastigotes and intracellular amastigotes in infected macrophages in vitro when illuminated at specific wavelengths to excite the respective photosensitizers for production of reactive oxygen species. Both Leishmania stages lost their viability completely when doubly photosensitized optimally and illuminated at low intensity, the host cells being left unscathed. Inoculation of mice with photoinactivated Leishmania produced no lesions, which invariably developed in the control groups during a period of observations for 8 weeks. Pretreatment of Leishmania with both photosensitizers rendered these cells susceptible to clearance from the ear dermis by white light illumination. The results suggest that double photosensitization for synergistic activity enhances the efficacy and safety of photodynamic therapy in general and for Leishmania in particular.     

Ferrocenylnaphthalene diimide-based electrochemical detection of methylated gene

Ferrocenylnaphthalene diimide (FND)-based electrochemical hybridization assay was applied to the detection of methylated cytosine of DNA using the products obtained after treatment with bisulfite followed by polymerase chain reaction (PCR), where unmethylated cytosine is converted to thymine and methylated one to cytosine. Twenty-meric DNA probes for the methylated (cytosine) and unmethylated (thymine) types of the part of the promoter region of cyclin D-dependent protein kinase inhibitor, p16, gene (p16^Ink4a) were used to be immobilized on the electrochemical array (ECA) chip. Using 1 μL of 10 ng/μL of methylated sample obtained from the methylation-specific PCR of methylated genome containing 10-times excess of unmethylated one, the methylated PCR sample could be detected by the identical electrochemical signals from the two DNA probes under the settled optimum hybridization conditions.     

Quantum optimal control of electron ring currents in chiral aromatic molecules

We report the results of optimal control simulations of pi-electron rotation (ring current) in a six-membered chiral aromatic molecule, 2,5-dichloro[n](3,6)pyrazinophane (DCP), attached at a surface and excited by a linearly polarized UV laser. DCP has a pair of optically allowed, quasidegenerate pi-electronic excited states. The laser pulse to generate an approximate angular momentum eigenstate consisting of the quasidegenerate states was designed using the global optimal control theory. For both counterclockwise and clockwise pi-electron rotations, the calculated objective functional and target yield as a function of the angle of the photon polarization vector show two maxima and two minima. The origin of the two minima is coherent excitation to only one of the quasidegenerate states. The two maxima arise from creation of a superposition of the quasidegenerate states. The optimal control pulse at the maxima is a two-color laser field resonant with the quasidegenerate states. The electric field of the optimal control pulse consists of two parts: a slowly oscillating part with phase phi(env) and a rapidly oscillating one. The phase phi(env) is a crucial parameter for determination of the rotation direction of pi electrons at the end of control. The results of the optimal control simulations suggest that pi-electron rotation can be controlled by applying a two-color laser field with adjusted phases.