Clustering of chemical databases by means of the projection of maximum overlapping sets similarity measurements onto multidimensional spaces

In this paper, we propose a new method for clustering of chemical databases based on the representation of measurements of structural similarity onto multidimensional spaces. The proposed method permits the tuning of the clustering process through the selection of the dimension of the projection space, the normal vectors and the sensibility of the projection process. The structural similarity of each element regarding to the database elements is projected onto the defined spaces generating clusters that represent the characteristics and diversity of the database and whose size and characteristics can be easily adjusted.     

Hexaruthenium carbonyl cluster complexes with basal edge-bridged square pyramidal metallic skeleton: efficient synthesis of 2-imidopyridine derivatives and determination of their reactive sites in carbonyl substitution reactions

The reactions of [Ru(3)(CO)(12)] with half equivalent of 2-amino-6-methylpyridine (H(2)ampy) or 2-aminopyridine (H(2)apy) in refluxing xylene give the hexanuclear products [Ru(6)(mu(3)-H)(2)(mu(5)-eta(2)-L)(mu-CO)(2)(CO)(14)] (L = ampy, 1; apy, 2). These reactions represent the first high-yield syntheses of hexanuclear complexes with a basal edge-bridged square pyramidal metallic skeleton. Five metal atoms of these complexes are bridged by the N-donor ligand in such a way that the edge-bridging metal atom is attached to the pyridine nitrogen, while the basal atoms of the square pyramid are capped by an imido fragment that arises from the activation of both N-H bonds of the NH(2) group. The reactive sites of these complexes in CO substitution reactions have been determined by studying the reactivity of 1 with triphenylphosphine. Two kinetically controlled monosubstitutions take place on the edge-bridging metal atom in positions cis to the pyridine nitrogen, leading to a mixture of two isomers of formula [Ru(6)(mu(3)-H)(2)(mu(5)-eta(2)-ampy)(mu-CO)(2)(CO)(13)(PPh(3))] (3 and 4). On heating at 80 degrees C, these monosubstituted isomers are transformed, via a dissociative pathway, into the product of thermodynamic control (5), which has the PPh(3) ligand on the apical Ru atom. The di- and trisubstituted derivatives [Ru(6)(mu(3)-H)(2)(mu(5)-eta(2)-ampy)(mu-CO)(2)(CO)(12)(PPh(3))(2)] (6) and [Ru(6)(mu(3)-H)(2)(mu(5)-eta(2)-ampy)(mu-CO)(2)(CO)(11)(PPh(3))(3)] (7) are stepwise formed from 3-5 and PPh(3). Compound 6 has the PPh(3) ligands on the edge-bridging and apical Ru atoms, and compound 7 has an additional PPh(3) ligand on an unbridged basal Ru atom. The compound [Ru(6)(mu(3)-H)(2)(mu(5)-eta(2)-ampy)(mu-CO)(2)(CO)(12)(mu-dppm)] (8), in which a basal and the apical Ru atoms are spanned by the dppm ligand, has been isolated from the reaction of 1 with bis(diphenylphosphino)methane.     

Simultaneous determination of propacetamol and paracetamol by derivative spectrophotometry

The present paper describes a procedure that phenols in air were preconcentrated in a membrane cell and their content was determined by adsorptive polarography. First, the phenols in air samples were preconcentrated in a membrane cell using 2.0 M NaOH solution, then in a pH 1.3 buffer solution p-bromophenylamine forms a diazoate with NaNO(2), and into the mixture the collected phenols were added to form azo-compound in a pH 13 buffer solution. The azo-compound can be adsorbed at the mercury electrode and yields a sensitive oscillopolarographic wave. Over the range 2.0x10(-8)-2.0x10(-5) M, the peak currents are linearly proportional to the concentration of phenols. The detection limit is 5.0x10(-9) M.     

Thermal Behaviour of some dioxane adducts ofM(C6F5)2 (M=Pd,Pt)

The thermal treatment of the pentafluorophenyl derivativesM(C₆F₅)₂Dx_n [M=Pd (n=2, 3) or Pt (n=2); Dx=dioxane] leads to the formation of the new dioxane adducts M(C₆F₅)₂Dx (M=Pd, Pt) and Pt(C₆F₅)₂Dx_1.5. Calculations of the order of reaction and the activation energy of some of the decomposition reactions are described. The values were determined by the Coats-Redfern and Freeman-Carroll methods. Structural data on the isolated intermediates were obtained by infrared spectroscopy and magnetic susceptibility measurements.

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Zusammenfassung Die thermische Behandlung der PentafluorphenylderivateM(C₆F₅)₂Dx_n [M=Pd (n=2, 3) oder Pt (n=2); Dx=Dioxan] führt zu der Bildung der neuen DioxanaddukteM(C₆F₅)₂Dx (M=Pd, Pt) und Pt(C₆F₅)₂Dx_1.5. Die Berechnungen der Reaktionsordnung und der Aktivierungsenergie einiger Zersetzungsreaktionen werden beschrieben. Die Werte wurden durch die Methoden von Coats-Redfern und Freeman-Carroll bestimmt. Die Strukturangaben der isolierten Zwischenprodukte wurden durch Infrarotspektroskopie und Messung der magnetischen Suszeptibilität erhalten.

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(₆F₅)₂, M=Pd n=2, 3 Pt _n=2, - , -M(C₆F₅)₂ (=Pd, Pt) (₆F₅)_21,5. , — —. .

     

Complexes of divalent nickel and copper with the Schiff base derived from 2-(2-aminophenyl)benzimidazole and benzaldehyde

Summary The reactions of divalent nickel and copper salts with the Schiff base derived from 2-(2-aminophenyl)benzimidazole and benzaldehyde, L, yield complexes of general formulae [CuL₂X₂] (X=Cl, Br, or ClO₄), [CuL(SO₄)], [CuL(SO₄)] · 4H₂O, and NiLX₂ (X=Cl, Br, or NCS).All the complexes have been characterized by elemental analyses, magnetic measurements, e.s.r. electronic and i.r. spectral studies. The results show that the Schiff base acts as bidentate ligand through the pyridine-like imine nitrogen of imidazole ring and the azomethine nitrogen. Tentative structures of the complexes are suggested.     

Pyrylium-containing polymers as sensory materials for the colorimetric sensing of cyanide in water

A sensory polymeric material for the colorimetric sensing of cyanide in water has been developed based on the reactivity of this anion with the pyrylium cation.     

Synthesis and conformational analysis of novel N(OCH3)-linked disaccharide analogues

N(OMe)-linked disaccharide analogues, isosteric to the corresponding natural disaccharides, have been synthesized by chemoselective assembly of unprotected natural monosaccharides with methyl 6-deoxy-6-methoxyamino-alpha-D-glucopyranoside in an aqueous environment. The coupling reactions were found to be chemo- and stereoselective affording beta-(1-->6) disaccharide mimics when using Glc and GlcNAc; in the case of Gal, the beta-anomer was prevalent (beta:alpha=7:1). An iterative method for the synthesis of linear N(OMe) oligosaccharide analogues was demonstrated, based on the use of an unprotected monosaccharide building block in which an oxime functionality at C-6 is converted during the synthesis into the corresponding methoxyamino group. The conformational analysis of these compounds was carried out by using NMR spectroscopy, ab initio, molecular mechanics, and molecular dynamics methods. Optimized geometries and energies of fourteen conformers for each compound have been calculated at the B3LYP/6-31G* level. Predicted conformational equilibria were compared with the results based on NMR experiments and good agreement was found. It appears that N(OMe)-linked disaccharide analogues exhibit a slightly different conformational behavior to their parent natural disaccharides.     

Photodissociation dynamics of the Kr-HBr cluster: the effect of the rare gas atom substitution

The ultraviolet photolysis dynamics of Kr-HBr(v=0) is investigated by means of wave packet calculations, focusing on the fragmentation pathway Kr-HBr+ variant Planck's over 2pi omega-->H+Kr-Br. Photolysis is simulated by starting from two different cluster initial states, namely the ground van der Waals (vdW) and an excited vdW bending state, associated with the Kr-H-Br and Kr-Br-H isomers, respectively. The results show that, for the two initial states of the cluster, the Kr-Br product yield is lower than that of Ar-Br radicals found in previous studies on Ar-HBr photolysis. Despite this decrease, the Kr-Br yield is found to be still rather high, in particular for the initial excited vdW state of Kr-HBr(v=0). In addition, the Kr-Br product state distributions exhibit a remarkably higher excitation (mainly rotational) than the corresponding Ar-Br distributions. The lower yield and higher excitation of Kr-Br as compared to Ar-Br, are attributed to a larger share of the energy available for the radical going to internal excitation in the case of the Kr-Br product. The different partition of the energy available for Kr-Br also causes significant deviations in the photolysis behavior of Kr-HBr when compared to that of Ar-HBr, in the case of the initial excited vdW state of both clusters. A common feature of the photodissociation of Kr-HBr and Ar-HBr is the manifestation of quantum interference effects in the Kr-Br and Ar-Br rotational state distributions, in the form of pronounced structures of supernumerary rotational rainbows.     

Totally selective ring-opening of amino epoxides with ketones: a general entry to enantiopure (2R,3S)- and (2S,3S)-3-aminoalkano-1,2-diols

[Reaction: see text] Transformation of enantiopure diastereoisomers (2R,1'S)- and (2S,1'S)-2-(1-aminoalkyl)epoxides into the corresponding 4-(1-aminoalkyl)-1,3-dioxolanes is achieved by reaction with different ketones in the presence of BF3.Et2O. The conversion takes place in very high yields, total selectivity, and without epimerization. A mechanism to explain this transformation is proposed. The obtained 1,3-dioxolanes can be deprotected, and (2R,3S)- and (2S,3S)-3-aminoalkano-1,2-diols were isolated.     

Second-generation mimics of ganglioside GM1 oligosaccharide: a three-dimensional view of their interactions with bacterial enterotoxins by NMR and computational methods

As a step to delineate a strategy of ligand design for cholera toxin (CT), NMR studies were performed on several mimics of the GM1 ganglioside oligosaccharide. The conformation of these analogues was investigated first in solution and then upon binding to cholera toxin by transferred nuclear Overhauser effect (TR-NOE) measurements. It was demonstrated that CT selects a conformation similar to the global minima of the free saccharides from the ensemble of presented conformations. No evidence of major conformational distortions was obtained, but one or two of the available conformers of the hydroxyacid side chain appear to be selected in the bound state. The NMR data were interpreted with the aid of computer models, generated and analyzed by using a combination of different approaches (MacroModels' MC/EM and MC/SD, Autodock, and GRID). Analysis of the NMR data supported by computational studies allowed us to interpret the experimental observations and to derive workable models of the ligand:toxin complexes. These models suggest that the higher affinity of the (R)-lactic acid derivative 3 may stem from lipophilic interactions with a hydrophobic area in the toxin binding site located in the vicinity of the sialic acid side chain binding region of the CT:GM1 complex, and formed by the side chain of Ile-58 and Lys-34. Thus, the models obtained have allowed us to make useful design suggestions for the improvement of ligand affinity.