Peptide Formation by Aminolysis of 1-Thio-β-D-glucopyranosyl Esters of N-Acylaminoacids

Abstract

The susceptibility of the fully acetylated 1-thio–β-D-glucopyranosyl esters of N-protected amino acids toward the amino group of an external amino acid-or peptide-ester was examined in dichloromethane at room temperature and at 40°, respectively. In each case, the aminolysis reaction led to rupture of the C-1 thiolester bond and formation of the corresponding N-acylpeptide ester; the reaction proceeded without racemization of the aglycon chiral centre. Evidence for a remarkably high acylating efficiency of the sugar—amino acid C-1 thiolester bond is presented.     

A rapid assay for on-site monitoring of infliximab trough levels: a feasibility study

Monitoring levels of biologicals against tumor necrosis factor (TNF) has been suggested to improve therapeutic outcomes in inflammatory bowel diseases (IBDs). This pilot study describes a rapid lateral flow (LF)-based assay for on-site monitoring of serum trough levels of humanized monoclonal antibody infliximab (IFX). The applied chromatographic method utilizes sequential flows of diluted serum, wash buffer, and an immunoglobulin generic label on LF strips with a Test line comprised of TNF-α. The successive flows permitted enrichment of IFX at the Test line before the label was applied. The label, luminescent upconverting phosphor (UCP) particles coated with protein-A, emits a 550-nm visible light upon excitation with 980-nm infrared light. IFX concentrations were determined through measurement of UCP fluorescence at the Test line. The assay was optimized to detect IFX levels as low as 0.17 μg/mL in serum. For patients with IBD, this limit is appropriate to detect levels associated with loss of response (0.5 μg IFX/mL). The assay was evaluated with clinical samples from patients with Crohn’s disease and correlated well within the physiologically relevant range from 0.17 to 10 μg/mL with an IFX-specific ELISA. Performance of the assay was further successfully validated with samples from blood donors, IFX negative IBD patients, and rheumatoid arthritis patients that had developed anti-IFX antibodies. Because of its generic nature, the assay is suited for detecting most therapeutic anti-TNF-α monoclonal antibodies.

Development and use of an atomistic CHARMM‐based forcefield for peptoid simulation

Peptoids are positional isomers of peptides: peptoid sidechains are attached to backbone nitrogens rather than α‐carbons. Peptoids constitute a class of sequence‐specific polymers resistant to biological degradation and potentially as diverse, structurally and functionally, as proteins. While molecular simulation of proteins is commonplace, relatively few tools are available for peptoid simulation. Here, we present a first‐generation atomistic forcefield for peptoids. Our forcefield is based on the peptide forcefield CHARMM22, with key parameters tuned to match both experimental data and quantum mechanical calculations for two model peptoids (dimethylacetamide and a sarcosine dipeptoid). We used this forcefield to demonstrate that solvation of a dipeptoid substantially modifies the conformations it can access. We also simulated a crystal structure of a peptoid homotrimer, H‐(N‐2‐phenylethyl glycine)₃‐OH, and we show that experimentally observed structural and dynamical features of the crystal are accurately described by our forcefield. The forcefield presented here provides a starting point for future development of peptoid‐specific simulation methods within CHARMM. © 2013 Wiley Periodicals, Inc.     

Discovery of New Pyrazolopyridine,Furopyridine, and Pyridine Derivatives as CDK2 Inhibitors: Design,Synthesis, Docking Studies,and Anti-Proliferative Activity

New pyridine, pyrazoloyridine, and furopyridine derivatives substituted with naphthyl and thienyl moieties were designed and synthesized starting from 6-(naphthalen-2-yl)-2-oxo-4-(thiophen-2-yl)-1,2-dihydropyridine-3-carbonitrile (1). The chloro, methoxy, cholroacetoxy, imidazolyl, azide, and arylamino derivatives were prepared to obtain the pyridine-⁻C² functionalized derivatives. The derived pyrazolpyridine-N-glycosides were synthesized via heterocyclization of the C²-thioxopyridine derivative followed by glycosylation using glucose and galactose. The furopyridine derivative 14 and the tricyclic pyrido[3′,2′:4,5]furo[3,2-d]pyrimidine 15 were prepared via heterocyclization of the ester derivative followed by a reaction with formamide. The newly synthesized compounds were evaluated for their ability to in vitro inhibit the CDK2 enzyme. In addition, the cytotoxicity of the compounds was tested against four different human cancer cell lines (HCT-116, MCF-7, HepG2, and A549). The CDK2/cyclin A2 enzyme inhibitory results revealed that pyridone 1, 2-chloro-6-(naphthalen-2-yl)-4-(thiophen-2-yl)nicotinonitrile (4), 6-(naphthalen-2-yl)-4-(thiophen-2-yl)-1H-pyrazolo[3,4-b]pyridin-3-amine (8), S-(3-cyano-6-(naphthaen-2-yl)-4-(thiophen-2-yl)pyridin-2-yl) 2-chloroethanethioate (11), and ethyl 3-amino-6-(naphthalen-2-yl)-4-(thiophen-2-yl)furo[2,3-b]pyridine-2-carboxylate (14) are among the most active inhibitors with IC₅₀ values of 0.57, 0.24, 0.65, 0.50, and 0.93 µM, respectively, compared to roscovitine (IC₅₀ 0.394 μM). Most compounds showed significant inhibition on different human cancer cell lines (HCT-116, MCF-7, HepG2, and A549) with IC₅₀ ranges of 31.3–49.0, 19.3–55.5, 22.7–44.8, and 36.8–70.7 μM, respectively compared to doxorubicin (IC₅₀ 40.0, 64.8, 24.7 and 58.1 µM, respectively). Furthermore, a molecular docking study suggests that most of the target compounds have a similar binding mode as a reference compound in the active site of the CDK2 enzyme. The structural requirements controlling the CDK2 inhibitory activity were determined through the generation of a statistically significant 2D-QSAR model.     

Influence of the isomeric structures of butyl acrylate on its single‐electron transfer‐degenerative chain transfer living radical polymerization in water Catalyzed by Na2S2O4

The aim of this work is to the study the influence of the isomer structures of butyl acrylate monomer on the single‐electron transfer/degenerative chain transfer mediated living radical polymerization (SET‐DTLRP). The kinetic of isobutyl acrylate is determined for the first time by SET‐DTLRP in water catalyzed by sodium dithionite. The plots of number‐average molecular weight versus conversion and ln([M]₀/[M]) versus time are linear, demonstrating a controlled polymerization. The influence of the isomer t‐butyl, i‐butyl, and n‐butyl on the kinetics, properties, and stereochemistry of the reactions was assessed. To the best of our knowledge, there is no previous report dealing with the synthesis of PiBA by any LRP approach in aqueous medium. The results presented in this work suggest that the stability provided by the acrylate side group has an important influence in the polymerization process. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 6542–6551, 2008     

Mechanism of soft solution processing formation of alkaline earth metal tungstates: an electrochemical and in situ AFM study

The mechanism of alkaline earth metal tungstate formation during soft solution processing was studied by cyclic voltammetry, electrochemical impedance spectroscopy and by direct in situ observation of the surface changes using atomic force microscopy. The electrochemical oxidation of W to WO₃ was followed by dissolution of WO₃ and, with some delay, by precipitation of tungstates at the metal surface. The same Tafel slopes observed in Li⁺, Ba²⁺, Sr²⁺ and Ca²⁺ containing solutions indicate that the course of the oxidation process is independent of the cation present in solution. The observed differences in the current-voltage curves outside the Tafel region are accounted for by the different film-forming tendencies of the various alkaline earth metal cations. The growth of tungstate layers at the W substrate decreases the electrochemically active area and limits the production of WO₄ ^2– at later stages of deposition. At low potentials (E<0.2 V) the oxidation of W is the rate-controlling step. At higher potentials, however, the dissolution process slows down due to a relative decrease of the pH in the electrode vicinity and dissolution becomes the rate-limiting step. Electronic Publication     

Adsorption of chlorobenzene vapor on V<Subscript>2</Subscript>O<Subscript>5</Subscript>/Al<Subscript>2</Subscript>O<Subscript>3</Subscript> catalyst under dynamic conditions

Adsorption dynamics of chlorobenzene vapors on a 5% V₂O₅/Al₂O₃ catalyst has been investigated using the frontal chromatography technique. The uptakes of chlorobenzene have been measured as a function of vapor concentration and adsorption equilibrium has been found to follow formally the Langmuir isotherm. The breakthrough time proved to be a linear function of the column length as expected. Breakthrough profiles have been reported for different experimental conditions and quantitatively fitted by a reduced lumped diffusion model. This model provides an analytical solution that facilitates engineering calculations. Model parameters show complex behavior as functions of stream characteristics and depend on column length. When empirical expressions relating model mass transfer coefficients with influencing variables are found the model demonstrates good accuracy in predicting column performance.     

Predicting reactivity and stereoselectivity in the Nazarov reaction: a combined computational and experimental study

The Nazarov reaction of pentadienyl cations generated by protonation of either dienones or alkoxytrienes has been examined in detail both experimentally and by DFT calculations. In particular, calculations at the B3LYP/6‐311G** level of theory accurately predicted, and accounted for, the outcome of the Brønsted acid catalyzed electrocyclization of 4π‐electron systems in which one of the double bonds involved in the process was embedded in N‐ and S‐heterocyclic rings. Calculations showed that both heteroatoms are capable of accelerating the ring closure by stabilizing the partial positive charge which develops at C‐6 (C‐2) in the transition state, with S‐heterocyclic derivatives being more reactive than the corresponding N‐containing compounds. In general, pentadienyl cations generated by protonation of alkoxytrienes were expected to react faster than those obtained by protonation of the corresponding dienones, as the latter were stabilized by a hydrogen bond. The presence of a substituent on the heterocyclic ring significantly affects the stereoselectivity (torquoselectivity) only in the case of the N‐heterocyclic derivatives, in which a 2‐alkyl group is axially oriented, providing the cis‐2,5‐disubstituted isomer only. Instead, with substituted S‐heterocyclic compounds, the anticipated torquoselectivity was very low and, in fact, a 3:1 diastereomeric mixture between the trans and cis products was experimentally found after ring closure. For this study, the synthesis of the appropriate N‐ and S‐containing dienones and alkoxytrienes was realized to evaluate the predictivity power of the DFT computations, which was very good in all of the cases examined, both in terms of reactivity and stereoselectivity. The consistency observed between computational and experimental results, therefore, shows the usefulness of DFT calculations at the B3LYP/6‐311G** level of theory as a robust instrument for the prediction of reactivity and stereoselectivity in the Nazarov electrocyclic reaction.