Ab initio potential-energy surface and rovibrational states of the HCN-HCl complex

A four-dimensional intermolecular potential-energy surface has been calculated for the HCN-HCl complex, with the use of the coupled cluster method with single and double excitations and noniterative inclusion of triples. Data for more than 13,000 geometries were represented by an angular expansion in terms of coupled spherical harmonics; the dependence of the expansion coefficients on the intermolecular distance R was described by the reproducing kernel Hilbert space method. The global minimum with De=1565 cm(-1) and Re=7.47a0 has a linear HCN-HCl hydrogen-bonded structure with HCl as the donor. A secondary hydrogen-bonded equilibrium structure with De=564 cm(-1) and Re=8.21a0 has a T-shaped geometry with HCN as the donor and the acceptor HCl molecule nearly perpendicular to the intermolecular axis. This potential surface was used in a variational approach to compute a series of bound states of the isotopomers HCN-H35Cl, DCN-H35Cl, and HCN-H37Cl for total angular momentum J=0,1,2 and spectroscopic parities e, f. The results could be analyzed in terms of the approximate quantum numbers of a linear polyatomic molecule with two coupled bend modes, plus a quantum number for the intermolecular stretch vibration. They are in good agreement with the recent high resolution spectrum of Larsen et al. [Phys. Chem. Chem. Phys. 7, 1953 (2005)] in the region of 330 cm(-1) corresponding to the HCl libration. The (partly anomalous) effects of isotopic substitutions on the properties of the complex were explained with the aid of the calculations.     

Evaluation of a glucose sensing antibody using weak affinity chromatography

Continuous monitoring of drug levels and endogenous molecules in biological fluids is a developing research area with many applications. One example is the need to improve life for millions of diabetes mellitus patients by continuously monitoring the glucose level. In order to have a dynamic response, the recognition molecule in a continuous sensor should preferentially have a fast dissociation rate and a dissociation constant in the millimolar range. We have evaluated the monoclonal antibody (mAb) 3F1E8-A2 for its potential to be used in a future glucose sensor application. The mAb was generated from hybridomas by immunizing mice with 10 kDa dextran (an alpha1,6-glucose polymer) with the aim of obtaining mAbs that can recognize the glucose monomer. The mAb was immobilized to macroporous silica and the interaction with dextran-derived oligosaccharides was evaluated with weak affinity chromatography (WAC). To measure the low affinities between the mAb 3F1E8-A2 and different monosaccharides, a competitive weak affinity chromatography approach was employed. It was found that the mAb had a higher specificity for glucose compared with other monosaccharides and the dissociation constant (K(d)) towards glucose was determined as 18.8 +/- 2.6 mm.     

X-Ray Crystallography and Free Energy Calculations Reveal the Binding Mechanism of A2A Adenosine Receptor Antagonists

We present a robust protocol based on iterations of free energy perturbation (FEP) calculations, chemical synthesis, biophysical mapping and X-ray crystallography to reveal the binding mode of an antagonist series to the A_2A adenosine receptor (AR). Eight A_2AAR binding site mutations from biophysical mapping experiments were initially analyzed with sidechain FEP simulations, performed on alternate binding modes. The results distinctively supported one binding mode, which was subsequently used to design new chromone derivatives. Their affinities for the A_2AAR were experimentally determined and investigated through a cycle of ligand-FEP calculations, validating the binding orientation of the different chemical substituents proposed. Subsequent X-ray crystallography of the A_2AAR with a low and a high affinity chromone derivative confirmed the predicted binding orientation. The new molecules and structures here reported were driven by free energy calculations, and provide new insights on antagonist binding to the A_2AAR, an emerging target in immuno-oncology.     

Probing crystal structures and transformation reactions of ammonium molybdates by 14N MAS NMR spectroscopy

The unique high-resolution feature offered by 14N magic-angle spinning (MAS) NMR spectroscopy of ammonium ions has been used to characterize the crystal structures of various ammonium molybdates by their 14N quadrupole coupling parameters, i.e., CQ, the quadrupole coupling constant, and etaQ, the asymmetry parameter. Two polymorphs of diammonium monomolybdate, (NH4)2MoO4, recently structurally characterized by single-crystal X-ray diffraction (XRD) and named mS60 and mP60, show distinct but different 14N MAS NMR spectra from each of which two sets of characteristic 14N CQ and etaQ values have been obtained. Similarly, the well-characterized ammonium polymolybdates (NH4)2Mo2O7, (NH4)6Mo7O24.4H2O, and (NH4)6Mo8O27.4H2O also give rise to distinct and characteristic 14N MAS NMR spectra. In particular, it is noted that simulation of the experimental (NH4)6Mo7O24.4H2O spectrum requires an iterative fit with six independent NH4+ sites. For the slow spinning frequencies employed (nu(r) = 1500-3000 Hz), all 14N MAS NMR spectra of the ammonium molybdates in this study are fingerprints of their identity. These different 14N MAS NMR fingerprints are shown to be an efficient tool in qualitative and quantitative assessment of the decomposition of (NH4)2MoO4 in humid air. Finally, by a combination of the 14N and 95Mo MAS NMR experiments performed here, it has become clear that a recent report of the 95Mo MAS spectra and data for the mS60 and mP60 polymorphs of (NH4)2MoO4 are erroneous because the sample examined had decomposed to (NH4)2Mo2O7.     

Well‐Defined Palladium Nanoparticles Supported on Siliceous Mesocellular Foam as Heterogeneous Catalysts for the Oxidation of Water

Herein, we describe the use of Pd nanoparticles immobilized on an amino‐functionalized siliceous mesocellular foam for the catalytic oxidation of H₂O. The Pd nanocatalyst proved to be capable of mediating the four‐electron oxidation of H₂O to O₂, both chemically and photochemically. The Pd nanocatalyst is easy to prepare and shows high chemical stability, low leaching, and recyclability. Together with its promising catalytic activity, these features make the Pd nanocatalyst of potential interest for future sustainable solar‐fuel production.     

Recrystallization of 223Ra with barium sulfate

In this work, the kinetics of barium sulfate recrystallization has been studied in acidic 0.01 mol dm^?3 sodium sulfate solution using ²²³Ra and ¹³³Ba tracers at very low total radium concentration, i.e. less than 10^?13 mol dm^?3. It was found that the system follows the homogeneous recrystallization model and that recrystallization rates, inferred by the decrease of ²²³Ra and ¹³³Ba in the aqueous solution, are fast. Therefore, even at very low concentrations, below the solubility limit, radium will be retained by barium sulfate—a mineral present in the deep underground repository.     

[B(O–C6H4–CN)4]– based Silver and Copper Coordination Polymers

A series of new coordination polymers bearing the [B(O–C₆H₄–CN)₄]^– anion was synthesized. Two new, one dimensional coordination frameworks of the type M[B(O–C₆H₄–CN)₄] (M = Ag, Cu) were obtained by salt metathesis. The reactivity towards organic Lewis‐bases was studied. The reaction with bidentate ligands yielded two dimensional networks with the general formula [M(L)][B(O–C₆H₄–CN)₄] {L = 2,2′‐bipyridine, 4,4′‐bipyridine, 1,2‐bis(pyridyl)ethane, 1,4‐diazabicyclo[2.2.2]octane}. The synthesis, properties and single crystal structure are reported.     

Development and characterization of a small electromembrane extraction probe coupled with mass spectrometry for real-time and online monitoring of in vitro drug metabolism

A small and very simple electromembrane extraction probe (EME-probe) was developed and coupled directly to electrospray ionization mass spectrometry (ESI-MS), and this system was used to monitor in real time in vitro metabolism by rat liver microsomes of drug substances from a small reaction (incubation) chamber (37 °C). The drug-related substances were continuously extracted from the 1.0 mL metabolic reaction mixture and into the EME-probe by an electrical potential of 2.5 V. The extraction probe consisted of a 1-mm long and 350-μm ID thin supported liquid membrane (SLM) of 2-nitrophenyl octyl ether. The drugs and formed metabolites where extracted through the SLM and directly into a 3 μL min^?1 flow of 60 mM HCOOH inside the probe serving as the acceptor solution. The acceptor solution was directed into the ESI-MS-system, and the MS continuously monitored the drug-related substances extracted by the EME-probe. The extraction efficiency of the EME-probe was dependant on the applied electrical potential and the length of the SLM, and these parameters as well as the volume of the reaction chamber were set to the values mentioned above to avoid serious depletion from the reaction chamber (soft extraction). Soft extraction was mandatory in order not to affect the reaction kinetics by sample composition changes induced by the EME-probe. The EME-probe/MS-system was used to establish kinetic profiles for the in vitro metabolism of promethazine, amitriptyline and imipramine as model substances.     

Characterization of a putative sensory [FeFe]-hydrogenase provides new insight into the role of the active site architecture

[FeFe]-hydrogenases are known for their high rates of hydrogen turnover, and are intensively studied in the context of biotechnological applications. Evolution has generated a plethora of different subclasses with widely different characteristics. The M2e subclass is phylogenetically distinct from previously characterized members of this enzyme family and its biological role is unknown. It features significant differences in domain- and active site architecture, and is most closely related to the putative sensory [FeFe]-hydrogenases. Here we report the first comprehensive biochemical and spectroscopical characterization of an M2e enzyme, derived from Thermoanaerobacter mathranii. As compared to other [FeFe]-hydrogenases characterized to-date, this enzyme displays an increased H₂ affinity, higher activation enthalpies for H⁺/H₂ interconversion, and unusual reactivity towards known hydrogenase inhibitors. These properties are related to differences in active site architecture between the M2e [FeFe]-hydrogenase and “prototypical” [FeFe]-hydrogenases. Thus, this study provides new insight into the role of this subclass in hydrogen metabolism and the influence of the active site pocket on the chemistry of the H-cluster.

Characterization of a group D putative sensory [FeFe]-hydrogenase reveals how the active site can be tuned to decrease CO inhibition and increase stability of a reduced H-cluster while retaining the ability to catalyze H⁺/H₂ interconversion.     

Polyanionic Frameworks in the Lithium Phosphidogermanates Li2GeP2 and LiGe3P3 – Synthesis,Structure, and Lithium Ion Mobility

Recently fast lithium ion conductors were discovered in compounds containing tetrahedral SiP₄^8– and GeP₄^8– units. In the context of material development for all solid state batteries the ternary Li/Ge/P phase system has been further investigated and two new lithium phosphidogermanates were discovered on the lithium poor side of the ternary composition diagram. Li₂GeP₂ crystallizes in space group I4₁/acd with unit cell parameters of a = 12.3069(1) Å and c = 19.0306(4) Å, consists of a framework of Ge₄P₁₀ supratetrahedra, and exhibits an ionic conductivity of 1.5(3)×10^–7 S · cm^–1 at 27 °C. LiGe₃P₃ crystallizes in Pbam with a = 9.8459(5) Å, b = 15.7489(7) Å, and c = 3.5995(2) Å. In LiGe₃P₃ Ge and P atoms form a two dimensional polyanion. The slabs consist of five- and six-membered heteroatomic rings comprising GeP₄ and Ge(P₃Ge) tetrahedra including homoatomic Ge–Ge bonds. A semiconducting behavior with an electronic conductivity of ∼10^–4 S · cm^–1 and a remarkable stability vs. air and moisture is observed.