Characterization of antithrombin III from human plasma by two-dimensional gel electrophoresis and capillary electrophoretic methods

The isoforms distribution of the glycoprotein antithrombin III (ATIII) derived from human plasma was investigated by means of isoelectric focusing (IEF) in polyacrylamide gels with immobilized pH gradients (IPG) and two-dimensional gel electrophoresis (2-DE) as well as capillary electrophoretic methods. It turned out that the presence of high concentrations of chaotropics (urea, thiourea) and zwitterionic detergents (3-[(3-cholamidepropyl)dimethylammonio]-1-propanesulfonate (CHAPS)) was decisive for attaining good resolution of the protein isoforms. Resolution by IPG-IEF was obtained with excellent reproducibility and pI differences down to 0.01 pH units could be distinguished. ATIII-alpha and ATIII-beta-fractions preseparated by heparin affinity chromatography showed an analogous but shifted spot pattern consisting each of one major and three minor isoforms. The main isoforms of ATIII-alpha and ATIII-beta exhibit pI values of 5.18 and 5.32, respectively, both values determined in the presence of high concentrations of urea. The pI difference of 0.14 pH units correspond to the effect of two sialic acids absent in ATIII-beta. The formation and occurrence of ATIII dimers and trimers turned out to be dependent on the sample preparation. The results obtained by 2-DE were compared with those of capillary zone electrophoresis (CZE) and capillary IEF (CIEF). Quantitative analysis regarding the CZE separated isoforms of plasma derived ATIII yielded a content of about 70% ATIII-alpha main isoform and about 6.6% of ATIII-beta. The pI values of ATIII determined by CIEF with internal calibration were in fair agreement with the pI values of the main isoforms achieved with 2-DE.     

Principles of rapid polymerase chain reactions: mathematical modeling and experimental verification

Polymerase chain reaction (PCR) is an important diagnostic tool for the amplification of DNA. The PCR process can be treated as a problem in biochemical engineering. This study focuses on the development of a mathematical model of the polymerase chain reaction. The PCR process consists of three steps: denaturation of target DNA, annealing of sequence-specific oligonucleotide primers and the enzyme-catalyzed elongation of the annealed complex (primer:DNA:polymerase). The denaturation step separates the double strands of DNA; this model assumes denaturation is complete. The annealing step describes the formation of a primer-fragment complex followed by the attachment of the polymerase to form a ternary complex. This step is complicated by competitive annealing between primers and incomplete fragments including primer-primer reactions. The elongation step is modeled by a stochastic method. Species that compete during the elongation step are deoxynucleotide triphosphates dCTP, dATP, dTTP, dGTP, dUTP, and pyrophosphate. Thermal deamination of dCTP to form dUTP is included in the model. The probability for a species to arrive at the active site is based on its molar fraction. The number of random insertion events depends on the average processing speed of the polymerase and the elongation time of the simulation. The numerical stochastic experiment is repeated a sufficient number of times to construct a probability density distribution (PDF). The moment of the PDF and the annealing step products provide the product distribution at the end of the elongation step. The overall yield is compared to six experimental values of the yield. In all cases the comparisons are very good.     

The Structure of Tetrakis(pentafluorophenyl)tellurium(IV), Te(C6F5)4

Tetrakis(pentafluorophenyl)tellurium(IV), Te(C₆F₅)₄, was prepared from the reaction of TeCl₄ and Mg(C₆F₅)Br. Crystallization of the crude product from n‐pentane at ?25 °C gave suitable single crystals. The title compound crystallizes in the monoclinic space group P2₁/c (Z = 8) with two independent molecules per unit cell.     

Low-temperature destruction of carbon tetrachloride over lanthanide oxide-based catalysts: from destructive adsorption to a catalytic reaction cycle

The catalytic destruction of carbon tetrachloride in the presence of steam, CCl(4) + 2 H(2)O-->4 HCl + CO(2), was investigated at 200-350 degrees C over a series of lanthanide (La, Ce, Pr and Nd) and alkaline-earth metal (Mg, Ca, Sr and Ba) oxide-based catalysts with kinetic experiments, Raman spectroscopy, X-ray photoelectron spectroscopy, IR spectroscopy, X-ray diffraction, and DFT calculations. This new catalytic reaction was achieved by combining destructive adsorption of CCl(4) on a basic oxide surface and concurrent dechlorination of the resulting partially chlorinated solid by steam. The combination of the two noncatalytic reactions into a catalytic cycle provided a rare opportunity in heterogeneous catalysis for studying the nature and extent of surface participation in the overall reaction chemistry. The reaction is proposed to proceed over a terminal lattice oxygen site with stepwise donation of chlorine atoms from the hydrocarbon to the surface and formation of the gas-phase intermediate COCl(2), which is readily readsorbed at the catalyst surface to form CO(2). In a second step, the active catalyst surface is regenerated by steam with formation of gas-phase HCl. Depending on the reaction conditions, the catalytic material was found to transform dynamically from the metal oxide state to the metal oxide chloride or metal chloride state due to the bulk diffusion of oxygen and chlorine atoms. A catalyst obtained from a 10 wt % La(2)O(3)/Al(2)O(3) precursor exhibited the highest destruction rate: 0.289 g CCl(4) h(-1) g(-1) catalyst at 350 degrees C, which is higher than that of any other reported catalyst system.     

Linear dependence in basis-set calculations for extended systems

The problem of linear dependence in basis-set calculations for extended systems is discussed. We show that the problem is intrinsic in three-dimensionally extended systems, but is not as serious in systems with extension in fewer dimensions. The possibility of choosing suitable basis sets that avoid linear dependence is discussed. It is shown that for systems extended in three dimensions in which the orbitals near the Fermi-level are well described by plane waves a mixed atomicorbital/plane-wave (AO –PW ) basis set with tight orbitals to describe the cores avoids the problem in the most efficient way. Numerical experiments with 1s Slater-type orbitals and plane waves on a simple cubic lattice are presented for illustration. © 1992 John Wiley & Sons, Inc.     

Osmium(II)-Phthalocyanine: Darstellung und Eigenschaften von Di(acido)phthalocyaninatoosmaten(II)

Osmium(II) Phthalocyanines: Preparation and Properties of Di(acido)phthalocyaninatoosmates(II) “H[Os(X)₂Pc^2?]” (X = Br, Cl) reacts in basic medium or in the melt with (ⁿBu₄N)X forming less stable, diamagnetic, darkgreen (ⁿBu₄N)₂[Os(X)₂Pc^2?]. Similar dicyano and diimidazolido(Im) complexes are formed by the reaction of “H[Os(Cl)₂Pc^2?]” with excess ligand in the presence of [BH₄]^?. The cyclic voltammograms show up to three quasireversible redoxprocesses: E_1/2(I) = 0.13 V (X = CN), ?0.03 V (Im), ?0.13 V (Br) resp. ?0.18 V (Cl) is metal directed (Os^II/III), E_1/2(II) = 0.69 V (Cl), 0.71 V (Br), 0.83 V (CN), 1.02 V (Im) is ligand directed (Pc^2?/?) and E_1/2(III) = 1.17 V (Cl) resp. 1.23 V (Br) is again metal directed (Os^III/IV). Between the typical “B” (～16.2 kK) and “Q” (～29.4 kK), “N regions” (～34.1 kK) up to seven strong “extra bands” of the phthalocyanine dianion (Pc^2?) are observed in the uv-vis spectrum. Within the row CN > Im > Br > Cl, most of the bands are shifted slightly, the “extra bands” considerably more to lower energy in correlation with E_1/2(I). The vibrational spectra are typical for the Pc^2? ligand with D_4h symmetry. M.i.r. bands at 514, 909, 1 173 and 1 331 cm^?1 are specific for hexa-coordinated low spin Os^II phthalocyanines. In the resonance Raman (r.r.) spectra polarized, depolarized or anomalously polarized deformation and stretching vibrations of the Pc^2? ligand will be selectively enhanced, if the excitation frequency coincides with “extra bands”. With excitation at ～19.5 kK the intensity of the symmetrical Os? X stretching vibration at 295 cm^?1 (X = Cl), 252 cm^?1 (X = Im) and 181 cm^?1 (X = Br) is r.r. enhanced, too. The asymmetrical Os? X stretching vibration is observed in the f.i.r. spectrum at 345 cm^?1 (X = CN), 274 cm^?1 (X = Cl), 261 cm^?1 (X = Im) and 200 cm^?1 (X = Br).     

Direct immobilization of native yeast iso-1 cytochrome C on bare gold: fast electron relay to redox enzymes and zeptomole protein-film voltammetry

Cyclic voltammetry shows that yeast iso-1-cytochrome c (YCC), chemisorbed on a bare gold electrode via Cys102, exhibits fast, reversible interfacial electron transfer (k(0) = 1.8 x 10(3) s(-1)) and retains its native functionality. Vectorially immobilized YCC relays electrons to yeast cytochrome c peroxidase, and to both cytochrome cd(1) nitrite reductase (NIR) and nitric oxide reductase from Paracoccus denitrificans, thereby revealing the mechanistic properties of these enzymes. On a microelectrode, we measured nitrite turnover by approximately 80 zmol (49 000 molecules) of NIR, coadsorbed on 0.65 amol (390 000 molecules) of YCC.     

Aurophilicity-based one-dimensional arrays of gold(I) phenylene-1,3- and -1,4-dithiolates

Phenylene-1,3-dithiol is converted into a trinuclear gold complex by treatment with 1 equiv of [[(Ph(3)P)Au](3)O](+)BF(4)(-). In the product, the phenylene unit bears one gold thiolate and one di(gold)sulfonium function. These components aggregate into one-dimensional arrays through head-to-tail aurophilic contacts between the two functions. In the association process, the Au[bond]S[bond]Au angle of the sulfonium group is opened up to accommodate the incoming gold atom between its metal centers. A similar mode of aggregation is found for the triply aurated biphenylene-4,4'-dithiol obtained using the tri(gold)oxonium salt with tri(p-tolyl)phosphine ligands. Probably for steric reasons, in this oligomerization process, the gold(I) thiolate unit is attached side-on to the digold sulfonium unit with retention of the small Au[bond]S[bond]Au angle. Under similar reaction conditions, and with the same molar ratio of the components, phenylene-1,4-dithiol is converted into the bis-sulfonium salt: 1,4-[[(p-Tol)(3)PAu](2)S](2)C(6)H(4)(BF(4))(2), the dications of which also associate into chains. Along the chains, the phenylene spacers alternate with tetranuclear gold clusters which arise from intimate aggregation of pairs of gold atoms. Together with previous findings, the present results show that gold thiolate (-SAuL) and digold sulfonium functions [-S(AuL)(2)(+)] in proper orientation at an arene unit (alpha-omega) can be considered as "soldering" points which can be used for joining up the molecular units into one-dimensional arrays solely through metal-metal contacts, which appear to be operative even against Coulomb repulsion between cations. The reaction of biphenylene-4,4'-dithiol with 2 equiv of sodium methoxide and [tri(c-hexyl)phosphine]gold chloride gives only neutral digold dithiolate complex 4 which is not associated owing to the steric bulk of the tri(c-hexyl)phosphine ligands.     

Die Reaktion von Tellurhexafluorid mit Trimethylamin,Strukturen der TeF5−- und SeF5−-Anionen

Reaction of Telluriumhexafluoride and Trimethylamine, Structures of the TeF₅^? and SeF₅^? Anions The reaction of TeF₆ and (CH₃)₃N is of the redox kind, resulting in reduction of tellurium: X-ray single crystal analysis reveals the compounds (CH₃)₂N? CH₂? N(CH₃)₂⁺TeF₅^? and [(CH₃)₃NH⁺]₅(TeF₅^?)₃(HF₂^?)₂. By comparison with published data it can be shown that this mixture is identical to previously published [(CH₃)₃N]₂TeF₆. The latter was supposed to be one of the few examples of tellurium in a coordination state of eight. (CH₃)₄N⁺TeF₅^? and (CH₃)₄N⁴SeF₅^? are obtained and their structure is investigated by single crystal x-ray methods also. The anions SF₅^?, SeF₅^? and TeF₅^? are discussed in terms of weak interactions.