Dielectrophoretic trapping of multilayer DNA origami nanostructures and DNA origami‐induced local destruction of silicon dioxide

DNA origami is a widely used method for fabrication of custom‐shaped nanostructures. However, to utilize such structures, one needs to controllably position them on nanoscale. Here we demonstrate how different types of 3D scaffolded multilayer origamis can be accurately anchored to lithographically fabricated nanoelectrodes on a silicon dioxide substrate by DEP. Straight brick‐like origami structures, constructed both in square (SQL) and honeycomb lattices, as well as curved “C”‐shaped and angular “L”‐shaped origamis were trapped with nanoscale precision and single‐structure accuracy. We show that the positioning and immobilization of all these structures can be realized with or without thiol‐linkers. In general, structural deformations of the origami during the DEP trapping are highly dependent on the shape and the construction of the structure. The SQL brick turned out to be the most robust structure under the high DEP forces, and accordingly, its single‐structure trapping yield was also highest. In addition, the electrical conductivity of single immobilized plain brick‐like structures was characterized. The electrical measurements revealed that the conductivity is negligible (insulating behavior). However, we observed that the trapping process of the SQL brick equipped with thiol‐linkers tended to induce an etched “nanocanyon” in the silicon dioxide substrate. The nanocanyon was formed exactly between the electrodes, that is, at the location of the DEP‐trapped origami. The results show that the demonstrated DEP‐trapping technique can be readily exploited in assembling and arranging complex multilayered origami geometries. In addition, DNA origamis could be utilized in DEP‐assisted deformation of the substrates onto which they are attached.     

Enthalpy of mixing of hydrated melts. II. Evidence for an endothermic step in the chlorocomplex formation of zinc

The enthalpies of mixing measured for the systems x(ZnCl₂+RH₂O)-(1–x)(LiCl+RH₂O) are reported. In contrast to the exothermic effects for R=4, the mixing processes at R=6 are considerably endothermic. For R=5, the sign of H _M depends on the composition. The mixing enthalpies of these hydrated melts are controlled by an endothermic step in the chlorocomplex formation of zinc and the exothermic hydration of lithium cations.     

Direct chemical synthesis of chiral methanol of 98% ee and its conversion to [(2)H1,(3)H]methyl tosylate and [(2)H1,(3)H-methyl]methionine

This paper describes the synthesis of chiral methanols [(R)- and (S)-CHDTOH] in a total of 12 steps starting from (chloromethyl)dimethylphenylsilane. The metalated carbamates derived from (dimethylphenylsilyl)methanol and secondary amines were borylated at low temperatures (-78 or -94 degrees C) using borates derived from tert-butyl alcohol and (+)-pinane-2,3-diol or (R,R)-1,2-dicyclohexylethane-1,2-diol to give diastereomeric boronates (dr 1:1 to 5:1). The carbamoyloxy group could be replaced smoothly with inversion of configuration by an isotope of hydrogen using LiAlH(D)4 [or LiBEt3H(D,T)]. If the individual diastereomeric boronates were reduced with LiAlD4 and oxidized with H2O2/NaHCO3, monodeuterated (dimethylphenylsilyl)methanols of ee > 98% resulted. The absolute configurations of the boronates were based on a single-crystal X-ray structure analysis. Brook rearrangement of the enantiomers of (dimethylphenylsilyl)-[(2)H1,(3)H]methanol prepared similarly furnished the chiral methanols which were isolated as 3,5-dinitrobenzoates in 81% and 90% yield, respectively. For determination of the enantiomeric excesses (98%), the methyl groups were transferred to the nitrogen of (S)-2-methylpiperidine and (3)H{(1)H} NMR spectra were recorded. The Brook rearrangement is a stereospecific process following a retentive course. The chiral methanols were also transformed into methyl tosylates used to prepare [(2)H1,(3)H-methyl]methionines in high overall yields (>80%).     

Entropic wetting and the free isotropic-nematic interface of hard colloidal platelets

We study bulk and interfacial properties of a model suspension of hard colloidal platelets with continuous orientations and vanishing thickness using both density functional theory, based on either a second virial approach or fundamental measure theory (FMT), and Monte Carlo (MC) simulations. We calculate the bulk equation of state, bulk isotropic-nematic (IN) coexistence, and properties of the (planar) free IN interface and of adsorption at a planar hard wall, where we find complete wetting of the nematic phase at the isotropic-wall interface upon approaching bulk IN coexistence. We investigate in detail the asymptotic decay of correlations at large distances. In all cases, the results from FMT and MC agree quantitatively. Our findings are of direct relevance to understanding interfacial properties of dispersions of colloidal platelets.     

Bidentate Lewis Acids Derived from o‐Diethynylbenzene with Group 13 and 14 Functions

Starting from 1,2‐diethynylbenzene, a series of bidentate Lewis acids was prepared by means of hydrometalations, in particular hydrosilylation, hydroboration, hydroalumination and terminal metalation based on group 13 and 14 elements. In the case of terminal alkyne metalation, the Lewis‐acidic gallium function was introduced using triethylgallium under alkane elimination. A total of six different Lewis acids based on a semiflexible organic scaffold were prepared, bearing −SiClMe₂, −SiCl₂Me, −SiCl₃, −B(C₆F₅)₂, −AlBis₂ (Bis=bis(trimethylsilyl)methyl) and −GaEt₂ as the corresponding functional units. In all cases, the Lewis acid functionalisation was carried out twice and the products were obtained in good to excellent yields. In the case of the twofold gallium Lewis acid, a different structural motif in the form of a polymer‐like chain was observed in the solid state. All new bidentate Lewis acids were characterised by multinuclear NMR spectroscopy, CHN analysis and X‐ray diffraction experiments.     

Insight into the Metabolic Profiles of Pb(II) Removing Microorganisms

The objective of the study was to gather insight into the metabolism of lead-removing microorganisms, coupled with Pb(II) removal, biomass viability and nitrate concentrations for Pb(II) bioremoval using an industrially obtained microbial consortium. The consortium used for study has proven to be highly effective at removing aqueous Pb(II) from solution. Anaerobic batch experiments were conducted with Luria-Bertani broth as rich growth medium over a period of 33 h, comparing a lower concentration of Pb(II) with a higher concentration at two different nutrient concentrations. Metabolite profiling and quantification were conducted with the aid of both liquid chromatography coupled with tandem mass spectroscopy (UPLC-HDMS) in a “non-targeted” fashion and high-performance liquid chromatography (HPLC) in a “targeted” fashion. Four main compounds were identified, and a metabolic study was conducted on each to establish their possible significance for Pb(II) bioremoval. The study investigates the first metabolic profile to date for Pb(II) bioremoval, which in turn can result in a clarified understanding for development on an industrial and microbial level.     

Molecular dynamics study of polymer crystallization in the presence of a particle

We have used molecular dynamics simulations with a coarse‐grained model to study the effect of a particle on the crystallization of polymer melt. We analyzed in particular a bond order parameter to characterize the nucleation and crystallization process. Our calculations show that the presence of a particle modifies the free energy landscape of polymer melts, locally induces the ordering of polymer melts near the particle surface, and thus enhances the polymer crystallization. Because the interaction between the particle and polymers is repulsive, our results suggest that the origin of the enhancement for polymer crystallization is entropic. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 2161–2166, 2007     

Synthesis and NMR elucidation of novel pentacyclo-undecane diamine ligands

The synthesis and NMR elucidation of eight novel pentacyclo-undecane (PCU) diamine compounds are reported. These ligands are potential anti-inflammatory agents to be used against rheumatoid arthritis (RA). One-dimensional NMR techniques (¹H and ¹³C spectra) show major overlapping of methine resonances of the “cage” (PCU) thereby making it extremely difficult to assign all NMR signals. This overlapping occurs as a result of the substitutions made at the quaternary carbons (C-8/C-11) of the cage. Two-dimensional NMR techniques proved to be a useful tool in overcoming this problem.     

Development of a certified reference material for the content of nitroimidazole parent drugs and hydroxy metabolites in pork meat

Nitroimidazoles have been applied in the past to poultry and pigs to treat protozoan diseases and to combat bacterial infections, but due to adverse health effects their use in food-producing animals has meanwhile been banned in the EU. The request for a certified reference material in a representative matrix was stipulated by the responsible Community Reference Laboratory and is underpinned by the need to improve the accuracy and comparability of measurement data and to establish metrological traceability of analytical results. The Institute for Reference Materials and Measurements (IRMM) has responded to this demand by developing and producing a new certified matrix reference material, ERM-BB124. This incurred lyophilised pork meat material was certified according to ISO guides 34 and 35 for the mass fractions of six nitroimidazole compounds. Processing of the frozen muscle tissue to the final material was accomplished by application of cutting, freeze-drying, mixing and milling techniques. Homogeneity and stability measurements were performed using liquid chromatography tandem mass spectrometry. The relative standard uncertainty due to possible heterogeneity showed to be below 1.8% for all analytes. Potential degradation during transport and storage was assessed by isochronous stability studies. No significant instability was detected at a storage temperature of −20 °C for a shelf-life of 2 years. The certified mass fraction values were assigned upon evaluation of the data acquired in an international laboratory inter-comparison involving 12 expert laboratories using different sample preparation procedures, but exclusively LC-MS/MS methods. Relative standard uncertainty contributions for the characterisation (between-lab variation of mean values) were found to be between 1.6 and 4.8%. Certified values for five analytes were in the range of 0.7 to 6.2 μg kg⁻¹, with expanded relative uncertainties ranging between 7 and 14%. Dimetridazole could be certified as “<0.25 μg kg⁻¹ with a probability of 95%”. All values are traceable to the International System of Units (SI). The material is intended to be used for method validation purposes (including trueness estimation) and for method performance assessment.     

A Lower Bound on the First Spectral Gap of Schrödinger Operators with Kato Class Measures

We study Schr?dinger operators on formally given by , where μ is a positive, compactly supported measure from the Kato class. Under the assumption that a certain condition on the μ-volume of balls is satisfied and that H_μ has at least two eigenvalues below the essential spectrum , we derive a lower bound on the first spectral gap of H_μ. The assumption on the μ-volume of balls is in particular satisfied if μ is of the form , where M is a compact (n-1)-dimensional Lipschitz submanifold of , σ_M the surface measure on M, and . Submitted: May 8, 2008.; Accepted: February 20, 2009.