Dipolar chemical shift correlation spectroscopy for homonuclear carbon distance measurements in proteins in the solid state: application to structure determination and refinement

High-resolution solid-state NMR spectroscopy has become a promising tool for protein structure determination. Here, we describe a new dipolar-chemical shift correlation experiment for the measurement of homonuclear 13C-13C distances in uniformly 13C,15N-labeled proteins and demonstrate its suitability for protein structure determination and refinement. The experiments were carried out on the beta1 immunoglobulin binding domain of protein G (GB1). Both intraresidue and interresidue distances between carbonyl atoms and atoms in the aliphatic side chains were collected using a three-dimensional chemical shift correlation spectroscopy experiment that uses homogeneously broadened rotational resonance recoupling for carbon mixing. A steady-state approximation for the polarization transfer function was employed in data analysis, and a total of 100 intramolecular distances were determined, all in the range 2.5-5.5 A. An additional 41 dipolar contacts were detected, but the corresponding distances could not be accurately quantified. Additional distance and torsional restraints were derived from the proton-driven spin diffusion measurements and from the chemical shift analysis, respectively. Using all these restraints, it was possible to refine the structure of GB1 to a root-mean square deviation of 0.8 A. The approach is of general applicability for peptides and small proteins and can be easily incorporated into a structure determination and refinement protocol.     

Low-level single and coincidence gamma-ray spectrometry

Analyses of anthropogenic and natural gamma-ray emitters in the environment require high sensitive detector systems operating in coincidence-anticoincidence modes. Thanks to an excellent energy resolution and a high efficiency, large volume HPGe detectors have been widely used in low-level gamma-ray spectrometry. In the present paper we discuss the characteristics of single and coincidence (HPGe-NaI(Tl)) arrangements suitable for analysis of environmental samples containing cascade gamma-ray emitters (e.g., ⁶⁰Co), positron emitters (e.g., ²²Na) and single gamma-ray emitters (e.g., ¹³⁷Cs). The detectors were placed in a large volume shields consisting of iron, lead and copper layers. The reduction of background for the single gamma-ray spectrometer is between 60 and 250, depending on the gamma-ray energy. As an improvement of the apparatus, low detection limits for analysis of ¹³⁷Cs (0.3 Bq·kg⁻¹) and ⁶⁰Co (0.1 Bq·kg⁻¹) in environmental samples, respectively, have been obtained.     

Rapid and Scalable Halosulfonylation of Strain-Release Reagents**

Sulfonylated aromatics are commonplace motifs in drugs and agrochemicals. However, methods for the direct synthesis of sulfonylated non-classical arene bioisosteres, which could improve the physicochemical properties of drug and agrochemical candidates, are limited. Here we report a solution to this challenge: a one-pot halosulfonylation of [1.1.1]propellane, [3.1.1]propellane and bicyclo[1.1.0]butanes that proceeds under practical, scalable and mild conditions. The sulfonyl halides used in this chemistry feature aryl, heteroaryl and alkyl substituents, and are conveniently generated in situ from readily available sulfinate salts and halogen atom sources. This methodology enables the synthesis of an array of pharmaceutically and agrochemically relevant halogen/sulfonyl-substituted bioisosteres and cyclobutanes, on up to multidecagram scale.     

Adsorption of antiphospholipid antibodies on affinity magnetoliposomes

Phosphatidylcholine-based magnetoliposomes containing specific ligands for biological molecules, so-called affinity magnetoliposomes (AML), may prove to be useful as adsorbents in applications such as diagnosis or anchoring and delivery of drugs at specific sites in the human body. In the present study, the performance of affinity magnetoliposomes to adsorb anticardiolipin antibodies (aCL) from a previously characterized pool of patients with autoimmune diseases is described. The magnetic vesicles were prepared by enrobing nanometer-sized colloidal magnetite particles with a phospholipid bilayer composed of dimyristoylphosphatidylcholine (DMPC) and the affinity lipid ligand cardiolipin (CL). Adsorption of antibodies onto the affinity magnetoliposomes assayed using a high-gradient magnetophoresis (HGM) system, in which the magnetoliposomes were first magnetically captured on stainless steel fibers, and which were subsequently overflowed either with a pool of sera from autoimmune patients or sera of healthy individuals as a control. The spectrophotometric assay showed stronger changes in absorbance spectra when the affinity magnetoliposomes containing cardiolipin were added to sera of autoimmune patients than when they were added to sera of healthy individuals. The breakthrough curves obtained from a frontal analyses of the adsorption in the magnetophoresis system showed a 10% difference for total adsorbed IgG when sera of autoimmune and healthy individuals were assayed on magnetoliposomes containing cardiolipin.     

The xanthophyll cycle pigments in Secale cereale leaves under combined Cd and high light stress conditions

Leaves of Secale cereale seedlings were exposed to high light illumination (1200micromolm(-2)s(-1)) and Cd ions at 5 or 50microM concentrations. Influence of these stress factors on violaxanthin cycle pigments content was analysed chromatographically. Chlorophyll a fluorescence induction was used to analyse response of PSII to stress conditions and contribution of light-harvesting complex (LHCII) in non-photochemical quenching of excitation energy. The Cd-induced all-trans violaxanthin isomerization was analysed by HPLC technique in acetonitrile:methanol:water (72:8:3, v/v) solvent mixture. Interestingly, in the control and Cd-treated leaves subjected to high light, photochemical utilization of absorbed energy increased. This indicates plant adaptation to high light stress. In control plants high light caused zeaxanthin formation, however, the presence of Cd in the nutrient solution resulted in reduction of the second step of violaxanthin de-epoxidation process and anteraxanthin accumulation. In this study we have also shown, that non-photochemical quenching can be independent of anteraxanthin and zeaxanthin content. The particular increase in the cis isomers fraction in Cd-treated leaves has been explained in terms of a direct metal-pigment interaction as confirmed by Cd-induced all-trans violaxanthin isomerization in organic solvent, leading to formation of 13-cis, 9-cis and 15-cis isomers.     

Quantum Chemical Study of the Pressure-dependent Phosphorescence of [Cr(ddpd)2]3+ in the Solid State

The chromium(III) complex [Cr(ddpd)₂][BF₄]₃ shows two spin-flip emission bands in the near-infrared spectral region. These bands shift bathochromically by −14.1 and −7.7 cm⁻¹ kbar⁻¹ under hydrostatic pressure (Angew. Chem. Int. Ed. 2018 , 57, 11069). The present study elucidates the structural changes of the chromium(III) cations under pressure using density functional theory with periodic boundary conditions and the resulting effects on the excited state energies using high-level CASSCF-NEVPT2 calculations. The differences of the bands in pressure sensitivity are traced back to a different orbital occupation of the intraconfigurational excited states.     

Newsvendor problem under complete uncertainty: a case of innovative products

The paper presents a new scenario-based decision rule for the classical version of the newsvendor problem (NP) under complete uncertainty (i.e. uncertainty with unknown probabilities). So far, NP has been analyzed under uncertainty with known probabilities or under uncertainty with partial information (probabilities known incompletely). The novel approach is designed for the sale of new, innovative products, where it is quite complicated to define probabilities or even probability-like quantities, because there are no data available for forecasting the upcoming demand via statistical analysis. The new procedure described in the contribution is based on a hybrid of Hurwicz and Bayes decision rules. It takes into account the decision maker’s attitude towards risk (measured by coefficients of optimism and pessimism) and the dispersion (asymmetry, range, frequency of extremes values) of payoffs connected with particular order quantities. It does not require any information about the probability distribution.

     

A nickel(II) coordination polymer derived from a tridentate Schiff base ligand with N,O-donor groups: synthesis,crystal structure,spectroscopy, electrochemical behavior and electrocatalytic activity for H<Subscript>2</Subscript>O<Subscript>2</Subscript> electroreduction in alkaline medium

A Ni(II) coordination polymer [C₄₂H₄₂K₂N₄Ni₄O₂₇] has been synthesized under open-air mild reaction conditions and characterized by physicochemical and spectroscopic methods. The X-ray crystal structure of the complex has been obtained. The crystallographic data revealed that each metal center is in a distorted octahedral geometry where the ligand coordinates to the metal centers by a nitrogen from the imine group, an oxygen from the carboxylic acid and a phenoxide group as an endogenous bridge to the metal centers. The coordination sphere is completed by an acetate, coordinated as an exogenous bridging ligand to both nickel centers, plus one terminal water ligand on each nickel. The polymeric structure is an infinite chain involving the binuclear nickel structure and K⁺ ions. Carbon paste electrodes modified with the Ni(II) coordination polymer were prepared, and the electrochemical behavior and electrocatalytic activity toward H₂O₂ reduction were investigated. The electrochemical results suggest that this Ni(II) coordination polymer has good catalytic activity with respect to H₂O₂ reduction.     

Cyclocondensation between fatty acid hydrazides and 1,1,1-trifluoro-4-alkoxy-3-alken-2-ones: Introducing a trifluoromethylated head onto fatty acid moieties

This paper reports the regioselective synthesis of new trifluoromethylated lipid derivatives, namely, 1-(5-hydroxy-5-trifluoromethyl-3-alkyl-4,5-dihydro-1H-pyrazol-1-yl)alkan-1-ones, through cyclocondensation reactions between a series of fatty hydrazides (palmitoyl, stearoyl, and oleoyl hydrazides) obtained from fatty acids from renewable resources (1,1,1-trifluoro-4-alkoxy-3-alken-2-ones [F₃CC(O)CH?C(R¹)OR, where R¹?=?H and R?Et; R¹?=?–(CH₂)₆CH₃, –(CH₂)₆CH₃, –(CH₂)₈CH₃, –(CH₂)₉CH₃, –(CH₂)₁₀CH₃, –(CH₂)₁₂CH₃, –(CH₂)₂Ph], and R?Me). Experimental observations showed that the lipophilic characteristic of 5-hydroxy-5-trifluoromethyl-4,5-dihydro-1H-pyrazoles (5–7) prevent the acid catalyzed dehydration to aromatization of 1H-pyrazole ring, although in some cyclocondensations a proportion of the aromatic derivative 1-(5-trifluoromethyl-3-alkyl-1H-pyrazol-1-yl)alkan-1-one was obtained. All products were characterized using multinuclear (¹H, ¹³C, ¹⁹F) NMR spectroscopy.     

Simple Methodology for the Quantitative Analysis of Fatty Acids in Human Red Blood Cells

In the last years, there has been an increasing interest in evaluating possible relations between fatty acid (FA) patterns and the risk for chronic diseases. Due to the long life span (120 days) of red blood cells (RBCs), their FA profile reflects a longer term dietary intake and was recently suggested to be used as an appropriate biomarker to investigate correlations between FA metabolism and diseases. Therefore, the aim of this work was to develop and validate a simple and fast methodology for the quantification of a broad range of FAs in RBCs using gas chromatography with flame ionization detector, as a more common and affordable equipment suitable for biomedical and nutritional studies including a large number of samples. For this purpose, different sample preparation protocols were tested and compared, including a classic two-step method (Folch method) with modifications and different one-step methods, in which lipid extraction and derivatization were performed simultaneously. For the one-step methods, different methylation periods and the inclusion of a saponification reaction were evaluated. Differences in absolute FA concentrations were observed among the tested methods, in particular for some metabolically relevant FAs such as trans elaidic acid and eicosapentaenoic acid. The one-step method with saponification and 60 min of methylation time was selected since it allowed the identification of a higher number of FAs, and was further submitted to in-house validation. The proposed methodology provides a simple, fast and accurate tool to quantitatively analyse FAs in human RBCs, useful for clinical and nutritional studies.