14CO2 labeling : a reliable technique for rapid measurement of total root exudation capacity and vascular sap flow in crop plants

Root release of organic compounds and rate of the vascular sap flow are important for understanding the nutrient and the source-sink dynamics in plants, however, their determination is procedurally cumbersome and time consuming. We report here a simple method involving ¹⁴C labeling for rapid and reliable measurement of root exudates and vascular sap flow rate in a variable groundnut population developed through seed gamma irradiation using a cobalt source (⁶⁰Co). An experimental hypothesis that a higher ¹⁴C level in the vascular sap would indicate a higher root release of carbon by the roots into the rhizosphere was verified.     

Comparison of HPLC Versus HPTLC-Densitometry for the Quantification of Chromone Glucosides in Saposhnikoviae divaricatae Radix

A HPLC and a HPTLC-densitometric method were developed for the quantification of prim-O-glucosylcimifugin and 4′-O-β-d-glucosyl-5-O-methylvisamminol the major chromone glucosides in the roots of Saposhnikovia divaricata. The validation of both methods resulted in comparable parameters regarding stability, specificity, linearity, robustness, precision and recovery, whereas complementary advantages were obtained concerning LOD and LOQ. The HPTLC-based densitometry revealed a lower LOD (1.11 versus 4.37 μg mL^?1 in HPLC) and LOQ (3.36 versus 13.24 μg mL^?1 in HPLC) for prim-O-glucosylcimifugin, whereas the HPLC resulted in a lower LOD (1.00 versus 4.10 μg mL^?1 in HPTLC-densitometry) and LOQ (3.04 versus 12.46 μg mL^?1 in HPTLC-densitometry) for 4′-O-β-d-glucosyl-5-O-methylvisamminol. Both methods revealed nearly matching contents of the chromones after analysis of different commercially available batches of Saposhnikoviae divaricatae radix with a total content for both chromone glycosides in the range from 0.31 ± 0.011 to 0.56 ± 0.021 % determined by HPLC and between 0.34 ± 0.011 and 0.61 ± 0.009 % determined by HPTLC. The plant material cultivated in Germany showed a very similar content and ratio of both chromone glucosides in comparison to the standard batches originating from China.     

Overriding Intrinsic Reactivity in Aliphatic C−H Oxidation: Preferential C3/C4 Oxidation of Aliphatic Ammonium Substrates

The site‐selective C?H oxidation of unactivated positions in aliphatic ammonium chains poses a tremendous synthetic challenge, for which a solution has not yet been found. Here, we report the preferential oxidation of the strongly deactivated C3/C4 positions of aliphatic ammonium substrates by employing a novel supramolecular catalyst. This chimeric catalyst was synthesized by linking the well‐explored catalytic moiety Fe(pdp) to an alkyl ammonium binding molecular tweezer. The results highlight the vast potential of overriding the intrinsic reactivity in chemical reactions by guiding catalysis using supramolecular host structures that enable a precise orientation of the substrates.     

Novel BODIPY-bridged cyclotriphosphazenes

Three new 2-component unsubstituted ( 4P ), diiodo- ( 5P ), and dibromo- ( 6P ) distyryl-BODIPY-bridged cyclotriphosphazene dimers were designed and synthesized. The newly synthesized BODIPY-cyclotriphosphazene systems were characterized by ¹ H, ¹³ C, and ³¹ P NMR spectroscopy. The photophysical properties of the distryl-BODIPYs (4–6) and BODIPY-cyclotriphosphazene dyads ( 4P – 6P ) were studied by UV-Vis absorption and fluorescence emission spectroscopy. In these derivatives, the bino-type cyclotriphosphazene derivative bearing unsubstituted BODIPY unit 4P exhibited high fluorescence and no singlet oxygen generation due to the lack of spin converter. The attachment of heavy atoms (iodine and bromine) enabled the production of singlet oxygen. The bino-type BODIPY-cyclotriphosphazenes ( 5P and 6P ) were also used as triplet photosensitizers in the photooxidation of 1,3-diphenylisobenzofuran to endoperoxide via generation of the singlet oxygen in dichloromethane. The singlet oxygen production of these compounds was also investigated via a direct method and produced a singlet oxygen phosphorescence peak at 1270 nm.     

TEM-cross section investigations of plasma polymer silver composite films

Plasma polymer silver composite films were investigated by means of cross section transmission electron microscopy (XTEM). The silver is encapsulated in the form of small particles in a nearly homogeneous plasma polymer matrix. The shape and the size of the particles vary with the polymerization power density. At lower polymerization power density the silver particles appear almost spherical and a three-dimensional particle distribution can be found in the polymer matrix. However the shape of particles at higher power density is more elliptic and the particle distribution is two-dimensional. The different kinds of encapsulation can be interpreted as being due to the different densities and porosities of the plasma polymer matrix.     

Multiply Borylated Arenes: X‐ray Crystal Structure Analyses and Quantum Chemical Calculations

Optimised synthesis procedures and results of X‐ray single crystal structure analyses for 4‐(dibromoboryl)toluene, 1, 3‐bis(dibromoboryl)benzene, 1, 4‐bis(dibromoboryl)benzene, and 1, 3, 5‐tris(dibromoboryl)benzene are reported. These compounds have also been studied by Hartree‐Fock (HF), density functional theory (DFT), and Mßller‐Plesset second‐order perturbation (MP2) methods in combination with the polarized double‐ζ valence (SVP) and polarized triple‐ζ valence (TZVP) basis sets of Ahlrichs and coworkers. A comparison of the quantum chemical results for optimised geometries and computed NMR chemical shifts with experiment is presented to test the quality of the various methods for this class of compounds. All DFT methods tested yield optimised geometries within the experimental error bars of 3σ for bond lengths, whereas larger deviations among the methods are observed for computed NMR chemical shifts. This calibration recommends the B3LYP/SVP combination as a reliable and computationally efficient level of theory to assess the structures and absolute and relative ¹H‐, ¹³C‐ and ¹¹B NMR shift values of borylated aromatic compounds in future investigations.     

Photochromic and fluorescence properties of coumarin fulgimides

Four new fulgimides possessing a fluorescent coumarin unit were synthesized from the corresponding fulgides, and their photochromic as well as fluorescence properties were investigated. The open-ring forms of coumarin fulgimides were found to exhibit fluorescence in the visible region. Upon exposure to UV light, the fulgimides were transformed into the nonfluorescent closed-ring forms, which can be reverted to the initial fluorescent open-ring forms on exposure to visible light. The efficiency of quenching of fluorescence was as high as 95% at the photostationary state of UV irradiation.     

SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems

Molecular simulation methods have increasingly contributed to our understanding of molecular and nanoscale systems. However, the family of Monte Carlo techniques has taken a backseat to molecular dynamics based methods, which is also reflected in the number of available simulation packages. Here, we report the development of a generic, versatile simulation package for stochastic simulations and demonstrate its application to protein conformational change, protein–protein association, small-molecule protein docking, and simulation of the growth of nanoscale clusters of organic molecules. Simulation of molecular and nanoscale systems (SIMONA) is easy to use for standard simulations via a graphical user interface and highly parallel both via MPI and the use of graphical processors. It is also extendable to many additional simulations types. Being freely available to academic users, we hope it will enable a large community of researchers in the life- and materials-sciences to use and extend SIMONA in the future. SIMONA is available for download under http://int.kit.edu/nanosim/simona . © 2012 Wiley Periodicals, Inc.