Vibrational dynamics of adsorbates – Quo vadis?

Vibrational energy is a prime reservoir for activating surface processes such as adsorption, desorption and reaction. On metal surfaces, vibrational energy flow occurs on a femto-to picosecond time scale and competing energy dissipation channels in this time range determine the outcome of chemical reactions at surfaces. Fundamental questions of relaxation time, mode selectivity, importance of intra- versus intermolecular coupling and coupling between electronic and vibrational states can now be tackled for relatively complex adsorbates and surfaces. This review looks at the state-of-the-art of surface vibrational dynamics across a wide range of vibrational spectroscopies and the challenges and exciting prospects that lie ahead to further not only our understanding but also the control of vibrational energy flow in model systems as well as real-world problems.     

Galactose‐Phosphonates as Mimetics of the Sialyltransfer by Trypanosomal Sialidases

In an attempt to find competitive inhibitors of the trans‐sialidase of the pathogen Trypanosoma cruzi, we have synthesized conjugates of carbocyclic sialylmimetics (e.g., cyclohexenephosphonates) and galactose derivatives. A trans‐sialidase inhibition assay revealed an interesting preference for ethylidene‐spacered conjugates involving the 3‐position of the sugar.      

Relating surface-enhanced Raman scattering signals of cells to gold nanoparticle aggregation as determined by LA-ICP-MS micromapping

The cellular response to nanoparticle exposure is essential in various contexts, especially in nanotoxicity and nanomedicine. Here, 14-nm gold nanoparticles in 3T3 fibroblast cells are investigated in a series of pulse-chase experiments with a 30-min incubation pulse and chase times ranging from 15 min to 48 h. The gold nanoparticles and their aggregates are quantified inside the cellular ultrastructure by laser ablation inductively coupled plasma mass spectrometry micromapping and evaluated regarding the surface-enhanced Raman scattering (SERS) signals. In this way, both information about their localization at the micrometre scale and their molecular nanoenvironment, respectively, is obtained and can be related. Thus, the nanoparticle pathway from endocytotic uptake, intracellular processing, to cell division can be followed. It is shown that the ability of the intracellular nanoparticles and their accumulations and aggregates to support high SERS signals is neither directly related to nanoparticle amount nor to high local nanoparticle densities. The SERS data indicate that aggregate geometry and interparticle distances in the cell must change in the course of endosomal maturation and play a critical role for a specific gold nanoparticle type in order to act as efficient SERS nanoprobe. This finding is supported by TEM images, showing only a minor portion of aggregates that present small interparticle spacing. The SERS spectra obtained after different chase times show a changing composition and/or structure of the biomolecule corona of the gold nanoparticles as a consequence of endosomal processing.     

Chromophore/DNA interactions: femto- to nanosecond spectroscopy, NMR structure, and electron transfer theory

The mechanism of photoinduced hole injection into DNA has been studied using an integrated approach that combines NMR structural analysis, time-resolved spectroscopy, and quantum-chemical calculations. A covalently linked acridinium derivative, the protonated 9-amino-6-chloro-2-methoxyacridine (X+), is replacing a thymine and separated from either guanine (G) or the easier to oxidize 7-deazaguanine (Z) by one adenine.thymine (A.T) base pair. The key features of this donor/acceptor system are the following: (i) In more than 95% of the duplexes, X+ is located in a central, coplanar position between the neighboring A.T base pairs with its long axis in parallel showing minimal twist and tilt angles (<15 degrees). The complementary adenine base is turned out into the extrahelical space. In a minority of less than 5%, X+ is found to be still attached to the duplex. X+ is most probably associated with one of the phosphates, since it is neither intercalated between more remote base pairs nor bound to sugars or grooves. This minority characterized by an excited state lifetime >10 ns gives rise to a small background signal in time-resolved measurements and contributes predominantly to steady-state fluorescence spectra. (ii) Although the intercalation mode of X+ is well defined, the NMR structure reveals that there are two conformations of X+ with respect to the arrangement of its methoxy substituent. In one conformation, the methoxy group is in the plane of the chromophore, while, in the other extraplanar conformation, the methoxy group forms an angle of 70 degrees with the acridinium ring. The fluorescence decay of 5'-ZAX and 5'-GAX tracts can be fitted to a biexponential function with similar amplitudes, reflecting the oxidation dynamics of G and Z, with the slower rate being determined by larger thermal activation energy. The attribution of biexponential electron transfer (ET) dynamics to the bimodal orientation of the methoxy group at the acridinium is supported by quantum-chemical calculations. These predict a larger free energy change for hole transfer in the nonplanar conformation as compared to the planar one, whereas the difference in the electronic couplings is negligible. (iii) Kinetic studies of the directionality of the 1(X+)* induced hole injection reveal similarly fast decay components in both directions of the duplex, that is, in 5'-ZAX and 5'-XAZ, with the amplitude of the fast component being significantly reduced in 5'-XAZ. The NMR structure shows that local structural deviations from B-DNA are much more pronounced in the 3'-5' direction than in the 5'-3' direction. According to quantum-chemical calculations, the directionality of charge injection is not a universal feature of the DNA duplex but depends critically on the rotation angle of the aromatic plane of the acridinium within the pi stack. The arrangement of X+ in 5'-ZAX and 5'-XAZ corresponds to a conformation with weak directionality of the electronic couplings. The increased disorder in the 3'-5'direction favors slow hole transfer components at the expense of the fast ones. (iv) A comparison of the hole transfer in 5'-GAX and 5'-ZAG shows that classical Marcus theory can explain the ratio of the charge shift rates of more than 2 orders of magnitude on the basis of a free energy difference between G and Z of 0.3 eV. Both NMR structures and quantum-chemical calculations justify the appreciable neglect of differences of electronic couplings as well as in the reorganization energy in 5'-GAX and 5'-ZAG. Despite the attractive concept for the behavior of floppy DNA oligonucleotides, in this acridinium/DNA system, there is no evidence for conformational gating, that is, for fluctuations in the electronic couplings that permit the ET to occur.     

Intestinal permeability of cyclic peptides: common key backbone motifs identified

Insufficient oral bioavailability is considered as a key limitation for the widespread development of peptides as therapeutics. While the oral bioavailability of small organic compounds is often estimated from simple rules, similar rules do not apply to peptides, and even the high oral bioavailability that is described for a small number of peptides is not well understood. Here we present two highly Caco-2 permeable template structures based on a library of 54 cyclo(-D-Ala-Ala(5)-) peptides with different N-methylation patterns. The first (all-trans) template structure possesses two β-turns of type II along Ala(6)-D-Ala(1) and Ala(3)-Ala(4) and is only found for one peptide with two N-methyl groups at D-Ala(1) and Ala(6) [(NMe(1,6)]. The second (single-cis) template possesses a characteristic cis peptide bond preceding Ala(5), which results in type VI β-turn geometry along Ala(4)-Ala(5). Although the second template structure is found in seven peptides carrying N-methyl groups on Ala(5), high Caco-2 permeability is only found for a subgroup of two of them [NMe(1,5) and NMe(1,2,4,5)], suggesting that N-methylation of D-Ala(1) is a prerequisite for high permeability of the second template structure. The structural similarity of the second template structure with the orally bioavailable somatostatin analog cyclo(-Pro-Phe-NMe-D-Trp-NMe-Lys-Thr-NMe-Phe-), and the striking resemblance with both β-turns of the orally bioavailable peptide cyclosporine A, suggests that the introduction of bioactive sequences on the highly Caco-2 permeable templates may result in potent orally bioavailable drug candidates.     

Mass transport characteristics of alkyl amines in a water/n-decane system

Rhenium (Re) nanoparticles have been synthesized by pulsed-laser decomposition of ammonium perrhenate (NH(4)ReO(4)) or dirhenium decacarbonyl (Re(2)(CO)(10)) in the presence of 3-mercaptopropionic acid (MPA) as capping agent, in both aqueous and organic media. Preliminary studies showed that the MPA-capped Re nanoparticles are capable of catalyzing the isomerization of 10-undecen-1-ol to internal alkenols via long chain migration of the C=C double bond at ca. 200°C. A one-pot synthesis of graphite-coated Re nanoparticles has also been achieved by pulsed-laser decomposition of Re(2)(CO)(10), due to photo-induced catalytic graphitization of the phenyl groups of PPh(3) on the surface of rhenium nanoparticles.     

Electron emission from photo-excited testosterone in water–ethanol solution

Testosterone (TES; 4-androstene-17β-ol-3-on) is found for the first time to eject electrons from its singlet excited state in water–ethanol solvent mixture. This ability was very recently also observed for 17β-estradiol (17βE2) and progesterone (PRG)/1/. With increasing TES-concentration, the yield of solvated electrons (${\text{e}}_{\text{s}}^{-}$) is decreasing, because of “associate” formation. At higher absorbed UV-doses (λ = 254 nm) the ${\text{e}}_{\text{s}}^{-}$ yield is passing a sharp maximum by formation of TES–ethanol adducts, which are able likewise to emit electrons when excited. At prolonged irradiation the resulting photolytic products of TES–ethanol adducts are also able to emit electrons.The capability of the hormones: 17βE2, PRG and TES to eject electrons and the resulting metabolites, some of which can induce cancer, is discussed.     

Novel xylylene diaminocellulose derivatives for enzyme immobilization

In the series of soluble and film-forming aminocelluloses for application as enzyme-compatible support matrices, novel derivatives with xylylene diamine residues selectively at C6 and solubilizing carbanilate groups were synthesized. Synthesis of these aminocelluloses was successful in three reaction steps starting from cellulose (Avicel PH 101) via tosylcellulose with degree of substitution of 0.88 (preferably at C6) and tosylcellulose carbanilate. Using a 10-fold excess of xylylene diamine, only one amino group of the diamine reacts during the nucleophilic substitution of the tosylate groups. In the last step, the influence of the structure of the starting xylylene diamine isomers and of the reaction conditions on the degree of substitution of the tosylate, carbanilate and xylylene diamino groups in the final polymer, on the occurrence of side reactions and on the polymer solubility was studied. All xylylene diamino tosylcellulose carbanilates are soluble in DMA, DMSO and DMF in never dried state and form transparent films on glass surfaces. These films are promising support matrices for enzyme immobilization because of their characteristic topography, as is shown by atomic force microscopy examinations of the film surfaces.