Normalization of projected spin eigenfunctions

We find the normalization integral for projected spin eigenfunctions, defined by means of character projection operators of the symmetric group. We also obtain a reduced expression for these spin eigenfunctions. This revised version was published online in July 2006 with corrections to the Cover Date.     

The nature of the active site in heterogeneous metal catalysis

This tutorial review, of relevance for the surface science and heterogeneous catalysis communities, provides a molecular-level discussion of the nature of the active sites in metal catalysis. Fundamental concepts such as "Br?nsted-Evans-Polanyi relations" and "volcano curves" are introduced, and are used to establish a strict partitioning between the so-called "electronic" and "geometrical" effects. This partitioning is subsequently employed as the basis for defining the concept "degree of structure sensitivity" which can be used when analyzing the structure sensitivity of catalytic reactions.     

Probing defect sites on TiO2 with [Re3(CO)12H3]: spectroscopic characterization of the surface species

Samples of the anatase phase of titania were treated under vacuum to create Ti(3+) surface-defect sites and surface O(-) and O(2) (-) species (indicated by electron paramagnetic resonance (EPR) spectra), accompanied by the disappearance of bridging surface OH groups and the formation of terminal Ti(3+)-OH groups (indicated by IR spectra). EPR spectra showed that the probe molecule [Re(3)(CO)(12)H(3)] reacted preferentially with the Ti(3+) sites, forming Ti(4+) sites with OH groups as the [Re(3)(CO)(12)H(3)] was adsorbed. Extended X-ray absorption fine structure (EXAFS) spectra showed that these clusters were deprotonated upon adsorption, with the triangular metal frame remaining intact; EPR spectra demonstrated the simultaneous removal of surface O(-) and O(2) (-) species. The data determined by the three complementary techniques form the basis of a schematic representation of the surface chemistry. According to this picture, during evacuation at 773 K, defect sites are formed on hydroxylated titania as a bridging OH group is removed, forming two neighboring Ti(3+) sites, or, when a Ti(4+)-O bond is cleaved, forming a Ti(3+) site and an O(-) species, with the Ti(4+)-OH group being converted into a Ti(3+)-OH group. When the probe molecule [Re(3)(CO)(12)H(3)] is adsorbed on a titania surface with Ti(3+) defect sites, it reacts preferentially with these sites, becoming deprotonated, removing most of the oxygen radicals, and healing the defect sites.     

Sulfur K-edge X-ray absorption spectroscopy and density functional theory calculations on superoxide reductase: role of the axial thiolate in reactivity

Superoxide reductase (SOR) is a non-heme iron enzyme that reduces superoxide to peroxide at a diffusion-controlled rate. Sulfur K-edge X-ray absorption spectroscopy (XAS) is used to investigate the ground-state electronic structure of the resting high-spin and CN- bound low-spin FeIII forms of the 1Fe SOR from Pyrococcus furiosus. A computational model with constrained imidazole rings (necessary for reproducing spin states), H-bonding interaction to the thiolate (necessary for reproducing Fe-S bond covalency of the high-spin and low-spin forms), and H-bonding to the exchangeable axial ligand (necessary to reproduce the ground state of the low-spin form) was developed and then used to investigate the enzymatic reaction mechanism. Reaction of the resting ferrous site with superoxide and protonation leading to a high-spin FeIII-OOH species and its subsequent protonation resulting in H2O2 release is calculated to be the most energetically favorable reaction pathway. Our results suggest that the thiolate acts as a covalent anionic ligand. Replacing the thiolate with a neutral noncovalent ligand makes protonation very endothermic and greatly raises the reduction potential. The covalent nature of the thiolate weakens the FeIII bond to the proximal oxygen of this hydroperoxo species, which raises its pKa by an additional 5 log units relative to the pKa of a primarily anionic ligand, facilitating its protonation. A comparison with cytochrome P450 indicates that the stronger equatorial ligand field from the porphyrin results in a low-spin FeIII-OOH species that would not be capable of efficient H2O2 release due to a spin-crossing barrier associated with formation of a high-spin 5C FeIII product. Additionally, the presence of the dianionic porphyrin pi ring in cytochrome P450 allows O-O heterolysis, forming an FeIV-oxo porphyrin radical species, which is calculated to be extremely unfavorable for the non-heme SOR ligand environment. Finally, the 5C FeIII site that results from the product release at the end of the O2- reduction cycle is calculated to be capable of reacting with a second O2-, resulting in superoxide dismutase (SOD) activity. However, in contrast to FeSOD, the 5C FeIII site of SOR, which is more positively charged, is calculated to have a high affinity for binding a sixth anionic ligand, which would inhibit its SOD activity.     

Validation of a Rapid Multiresidue Method for the Determination of Pesticide Residues in Vine Leaves. Comparison of the Results According to the Different Conservation Methods

The QuEChERS method was applied to the determination of pesticide residues in vine (Vitis vinifera) leaves by LC-MSMS. The method was validated in-house for 33 pesticides representing 17 different chemical groups, that are most commonly used in grape production. Recoveries for the pesticides tested ranged from 75 to 104%, and repeatability and reproducibility relative standard deviations (RSD_r% and RSD_Rw%) were less than 20%. The method was applied to the analysis of pesticide residues in 17 market brands of vine leaves processed according to three different preservation methods and sampled from the Lebanese market. Dried vine leaves were more contaminated with pesticide residues than those preserved in brine or stuffed vine leaves. The systemic fungicides were the most frequently detected among all the phytosanitary compounds usually applied to grape production. Brine-preserved and stuffed vine leaves contained lower concentrations of the residues but still contained a cocktail of different pesticides.     

Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites

To mimic a hypothetical pathway for protein evolution, we previously tailored a monomeric protein (cyt cb₅₆₂) for metal-mediated self-assembly, followed by re-design of the resulting oligomers for enhanced stability and metal-based functions. We show that a single hydrophobic mutation on the cyt cb₅₆₂ surface drastically alters the outcome of metal-directed oligomerization to yield a new trimeric architecture, (TriCyt1)_3. This nascent trimer was redesigned into second and third-generation variants (TriCyt2)₃ and (TriCyt3)₃ with increased structural stability and preorganization for metal coordination. The three TriCyt variants combined furnish a unique platform to 1) provide tunable coupling between protein quaternary structure and metal coordination, 2) enable the construction of metal/pH-switchable protein oligomerization motifs, and 3) generate a robust metal coordination site that can coordinate all mid-to-late first-row transition-metal ions with high affinity.     

Oriented confined water induced by cationic lipids

We report on attenuated total reflection Fourier-transform infrared (ATR FTIR) spectroscopic measurements on oriented lipid multilayers of N,N-dimethyl-N,N-dioctadecyl-ammonium halides (DODAX, X = F, Cl, Br, I). The main goal of this study is the investigation of the structure and spectroscopic properties of water absorbed to these model membranes. Intensities of the water stretch absorptions were used to determine the amount of bound water. At high water activity, DODAF membranes bind ~11 water molecules/lipid while DODAC and DODAB adsorb 1-2 water/lipid and DODAI was hydrophobic. By adjustment of DODAF hydration to ~2 water molecules, stretching absorptions from water of the first hydration shell were accessible for the fluoride, chloride, and bromide analogs. The polarized measurements demonstrate highly confined and oriented water with infrared (IR) order parameters ranging from 0.2 to -0.4. Resolved IR water band components are attributed to different hydrogen-bonded populations. Complementary molecular dynamics simulations of DODAB strongly support the existence of differently hydrogen-bonded and oriented water within DODAB multilayers. A combination of both techniques was used for an assignment of water stretch band components to structures. The described cationic lipid systems are a prototype for a bottom-up approach to understand the IR spectroscopy of structured water at biological interfaces since they permit a defined increase of hydrophilic water-anionic interactions leading to extended water networks at membranes.     

Porous,Conductive Metal‐Triazolates and Their Structural Elucidation by the Charge‐Flipping Method

A new family of porous crystals was prepared by combining 1H‐1,2,3‐triazole and divalent metal ions (Mg, Mn, Fe, Co, Cu, and Zn) to give six isostructural metal‐triazolates (termed MET‐1 to 6). These materials are prepared as microcrystalline powders, which give intense X‐ray diffraction lines. Without previous knowledge of the expected structure, it was possible to apply the newly developed charge‐flipping method to solve the complex crystal structure of METs: all the metal ions are octahedrally coordinated to the nitrogen atoms of triazolate such that five metal centers are joined through bridging triazolate ions to form super‐tetrahedral units that lie at the vertexes of a diamond‐type structure. The variation in the size of metal ions across the series provides for precise control of pore apertures to a fraction of an Angstrom in the range 4.5 to 6.1 Å. MET frameworks have permanent porosity and display surface areas as high as some of the most porous zeolites, with one member of this family, MET‐3, exhibiting significant electrical conductivity.     

Experimental and theoretical investigation of vibrational spectra of copper phthalocyanine: polarized single‐crystal Raman spectra,isotope effect and DFT calculations

The IR‐ and Raman spectra of copper phthalocyanine (CuPc), as well as the isotopic wavenumber shifts upon ¹⁵N substitution in CuPc, were investigated experimentally and theoretically. The symmetry of molecular vibrations was determined using polarized Raman spectra of an oriented CuPc single crystal. Density functional theory (DFT) calculations were used for the detailed assignment of different bands in the vibrational spectra of CuPc. Theoretically predicted geometry, wavenumbers and isotopic shifts are in a very good agreement with the experimental values. A comparison of experimentally obtained isotopic shifts with theoretical predictions allowed us to reveal some characteristic features of normal vibrations of CuPc molecule. Copyright © 2009 John Wiley & Sons, Ltd.     

Calibration of electron spectra

Energy calibration procedures, which have been used in ESCA, are reviewed. Binding energies of calibration lines suitable for solid and for gaseous samples have been determined. Charging effects of nonconducting samples have been investigated for different X-radiation, sample thickness and material. A calibration relative to lines from some insulating standard compound mixed into the sample was shown to be unreliable, while experiments indicated that in calibrating relative to a surface layer, the carbon line from the hydrocarbon contamination layer can be used as well as a line from a thick layer of a noble metal on a part of the sample.