New strategy for the construction of a monotetrahydrofuran ring in Annonaceous acetogenin based on a ruthenium ring-closing metathesis: application to the synthesis of Solamin

An original convergent total synthesis of Solamin (type A annonaceous acetogenin) was achieved. The central THF core was obtained by means of a ring-closing metathesis (RCM) reaction using a ruthenium imidazolylidene complex. The RCM substrate was prepared from a vinyl-substituted epoxide by reaction with an allyl alcohol, both synthesized from propargylic alcohol. The flexibility of the strategy should be useful in preparing various natural and unnatural annonaceous acetogenins.     

Vacuum-UV and Low-Energy Electron-Induced DNA Strand Breaks – Influence of the DNA Sequence and Substrate

DNA is effectively damaged by radiation, which can on the one hand lead to cancer and is on the other hand directly exploited in the treatment of tumor tissue. DNA strand breaks are already induced by photons having an energy below the ionization energy of DNA. At high photon energies, most of the DNA strand breaks are induced by low-energy secondary electrons. In the present study we quantified photon and electron induced DNA strand breaks in four different 12mer oligonucleotides. They are irradiated directly with 8.44 eV vacuum ultraviolet (VUV) photons and 8.8 eV low energy electrons (LEE). By using Si instead of VUV transparent CaF₂ as a substrate the VUV exposure leads to an additional release of LEEs, which have a maximum energy of 3.6 eV and can significantly enhance strand break cross sections. Atomic force microscopy is used to visualize strand breaks on DNA origami platforms and to determine absolute values for the strand break cross sections. Upon irradiation with 8.44 eV photons all the investigated sequences show very similar strand break cross sections in the range of 1.7–2.3×10⁻¹⁶ cm². The strand break cross sections for LEE irradiation at 8.8 eV are one to two orders of magnitude larger than the ones for VUV photons, and a slight sequence dependence is observed. The sequence dependence is even more pronounced for LEEs with energies <3.6 eV. The present results help to assess DNA damage by photons and electrons close to the ionization threshold.     

Reactivity of ZrO(MFP) and ZrO(RP) Nanoparticles with LnCl3 for Solvatochromic Luminescence Modification and pH-Dependent Optical Sensing

The luminescence of the inorganic–organic hybrid nanoparticles ZrO(MFP) (MFP=methylfluorescein phosphate) and ZrO(RP) (RP=resorufin phosphate) was modified by addition of different rare earth halides LnCl₃. The resulting composite materials form dispersible nanoparticles that exhibit modified nanoparticle fluorescence depending on the rare earth ion. The resulting chromaticity of the luminescence is further variable by the employment of different solvents for ZrO(MFP)-based composite systems. The strong solvatochromic effect of the MFP chromophore leads to different luminescence chromaticities of the composite materials between green, yellow, and blue in THF, toluene, and dichloromethane, respectively. The luminescence of ZrO(RP)-based composite particles can be modified between the red and blue spectral regions in dependence on the applied reaction temperature. Beside a luminescence shift that is derived from nanoparticle modification by LnCl₃, a strong turn-on effect of ZrO(RP) particles results after contact with different Brønsted acids and bases in combination with a respective chromaticity shift. Both effects enable the potential employment of such particles as highly sensitive optical pH sensors.     

A PHYSICAL BASIS FOR THE CHROMATIC S POTENTIALS IN COLOR VISION

Abstract— The photoelectric response S (photoconduction and the photovoltaic effect) of a β-carotene cell are shown to replicate in detail the photoelectric color responses of animal retina — the chromatic S potentials, In both, short-wavelength light generates a negative current flow with relatively fast time constants; long-wavelength light generates a positive current flow with longer time constants; intermediate wavelength lights generate currents which are superpositions of these two currents and exhibit on/off peaks. A slight modification of the 'primitive theory of the electroretinogram' previously suggested, incorporates these color responses in the theory. The correlation between the physical detector and the retinal receptor unit suggested by this theory can explain the facts that agents which enhance the glial membrane potential increase the red response and decrease the blue response of the chromatic 5 potentials. The response changes due to adaptation can also be explained by the theory.     

Three-branched dendritic dipolar nonlinear optical chromophores, more than three times a single-strand chromophore?

To elucidate the dependence of the nonlinear optical (NLO) response on the conformation of triply branched derivatives, a new series of D-pi-A dendrimers has been synthesized. A combined approach of experiments (UV-vis and EOA measurements) and computational predictions (semiempirical and ab initio) was applied both on the dendrimers and on the corresponding single-strand chromophores. It has been shown that depending on the surrounding media the NLO activity of a flexible dendrimer can be very different. Two limiting cases are proposed: (i) the dendrimer resembles a solution of the corresponding single-strand chromophores with about 3-fold concentration, where the hyperpolarizability is the sum of the effect of three noninteracting single-strand subunits ("independent chromophores" limit); (ii) the dendrimers show nearly parallel or helical alignments of the single-strand subunits. Because of this change of conformation the NLO activity can be enhanced up to nine times the value of the "independent chromophores" limit and, thus, are more than a single strand chromophore. Conformers of dendrimers with interacting single-strand chromophores have been identified experimentally in nonpolar solutions by the EOA spectroscopy and possible structures have been revealed by numerical calculations, which could moreover show the tendency of the effects on the hyperpolarizability due to structural changes of the flexible dendritic architecture. Implications for future research developments are given to implement the "more than three times" concept.     

Modern biomolecular mass spectrometry and its role in studying virus structure, dynamics, and assembly

Over a century since its development, the analytical technique of mass spectrometry is blooming more than ever, and applied in nearly all aspects of the natural and life sciences. In the last two decades mass spectrometry has also become amenable to the analysis of proteins and even intact protein complexes, and thus begun to make a significant impact in the field of structural biology. In this Review, we describe the emerging role of mass spectrometry, with its different technical facets, in structural biology, focusing especially on structural virology. We describe how mass spectrometry has evolved into a tool that can provide unique structural and functional information about viral-protein and protein-complex structure, conformation, assembly, and topology, extending to the direct analysis of intact virus capsids of several million Dalton in mass. Mass spectrometry is now used to address important questions in virology ranging from how viruses assemble to how they interact with their host.     

Probing noncovalent protein—Ligand interactions of the cGMP-dependent protein kinase using electrospray ionization time of flight mass spectrometry

Nanoflow electrospray ionization time of flight mass spectrometry (ESI-TOF-MS) was used to study activation properties of the cGMP-dependent protein kinase (PKG). Our nanoflow ESI-TOF-MS analysis confirms that PKG mainly occurs as a 153 kDa homodimer and is able to bind four cGMP molecules, which is in agreement with the known stoichiometry. Binding order and stoichiometry of cGMP, the non-hydrolysable ATP analog beta,gamma-imidoadenosine 5'-triphosphate (AMPPNP) and Mn2+ for PKG were characterized as model for the active PKG-cGMP-ATP/Mg2+ complex. Already in the absence of cGMP, a noncovalent complex between PKG and two molecules of AMPPNP could be observed by ESI-TOF-MS. Binding of AMPPNP to PKG was strongly enhanced by the addition of MnCl2 to the spray solution. This is in agreement with binding of AMPPNP/Mn2+ in the ATP binding pocket of PKG since all protein kinases require a metal ion to accompany ATP in the ATP-binding pocket for proper positioning of the beta and gamma phosphates. Additionally, this finding could imply that within the inactive conformation of PKG, the autoinhibition-domain, when in contact with the substrate-docking domain, does not block the entrance to the ATP-binding site. In the presence of cGMP, less of the fully saturated PKG-(cGMP)4(AMPPNP/Mn2+)2 complex was observed, suggesting that the PKG-ATP interaction is weakened in the active conformation of PKG. Additionally, limited proteolysis in combination with native-ESI MS showed to be a useful tool to study the contact regions on the PKG-dimer and also allowed the rapid determination of the overall autophosphorylation status of the protein. These measurements indicated that autophosphorylation mainly occurs within the first 80 aminoterminal residues and involves in total 3-4 phosphates per subunit.     

Construction of a Microstructured Collagen Membrane Mimicking the Papillary Dermis Architecture and Guiding Keratinocyte Morphology and Gene Expression

A papillary‐structured collagen fibril membrane is created, mimicking the 3D‐architecture of the human papillary dermis. Primary human keratinocytes cultured to confluency on papillar‐structured films are compared to keratinocytes cultured on flat membranes. Microscopical evaluation reveals the presence of morphologically distinct cells at the base of the papillar structures that are not observed on flat membranes. Gene expression microarrays and RT‐qPCR indicate that these cells are in a more proliferative/migrational state, whereas cells on flat membranes have a more differentiated expression profile. Immunohistochemical stainings confirm these results. In conclusion, specific collagen architecture can direct keratinocyte behavior, and this may be used to further improve skin regeneration.

     

Heat-shrinking spherical and columnar supramolecular dendrimers: their interconversion and dependence of their shape on molecular taper angle

Synthesis and modes of self-assembly are described for the tapered monodendritic molecules 3,4,5-nGi-X of generation i = 1, 2, 3 (see structures below) that contain multiple (CH2)nH alkyl chains on their periphery (n = 12, 14, 16) and a polar group X at the apex (X = COOH, COONa, COOCs, CO(OCH2CH2)3OH). These monodendrons self-assemble into supramolecular cylindrical or spherical dendrimers, which in turn self-organise into p6mm columnar or Pm3n cubic thermotropic liquid crystals, respectively. The two principal ways of affecting the self-assembly of these compounds by means of their molecular architecture are: a) by changing the width of the wide (aliphatic) end, and b) by changing the volume at the apex. In the present work a) is controlled through temperature (conformational disorder) and b) is controlled by chaging the generation number i or the size of X, for example, through the choice of metal cation. The single most important geometric parameter of these dendritic building blocks is the molecular solid angle (taper angle) alpha; a high alpha leads to spherical and a low alpha to cylindrical supramolecular dendrimers. Furthermore, alpha also determines the equilibrium size of the supramolecular objects; a larger alpha results in a smaller diameter. The unusually strong negative thermal expansion coefficient of the cubic and columnar lattice is attributed to the excess of the increasingly highly tapered molecules being rejected from their parent aggregates and reassembling as new ones. Increasing alpha is also considered to be responsible for the observed thermotropic columnar-cubic transition.