De novo structure-based design of bisurea hosts for tetrahedral oxoanion guests

This paper presents a computational approach to the deliberate design of improved host architectures. De novo molecule building software, HostDesigner, is interfaced with molecular mechanics software, GMMX, providing a tool for generating and screening millions of potential structures. The efficacy of this computer-aided design methodology is illustrated with a search for bisurea podands that are structurally organized for complexation with tetrahedral oxoanions.     

Advances in <Superscript>79</Superscript>Se analyses on Savannah river site radioactive waste matrices

Waste cleanup efforts underway at the United States Department of Energy’s (DOE) Savannah River Site (SRS) in South Carolina, as well as other DOE nuclear sites, have created a need to characterize ⁷⁹Se in radioactive waste inventories. Successful analysis of ⁷⁹Se in high activity waste matrices is challenging for a variety of reasons. As a result of these unique challenges, the successful quantification of ⁷⁹Se in the types of matrices present at SRS requires an extremely efficient and selective separation of ⁷⁹Se from high levels of interfering radionuclides. A robust ⁷⁹Se radiochemical separation method has been developed at the Savannah River National Laboratory (SRNL) which is routinely capable of successfully purifying ⁷⁹Se from a wide range of interfering radioactive species. In addition to dramatic improvements in the K_d, ease, and reproducibility of the analysis, the laboratory time has been reduced from several days to only 6 h.     

Theoretical studies on the redox potentials of Fe dinuclear complexes as models for hydrogenase

Density Functional calculations have been performed at the uB3LYP and uBP86 levels to calculate the one-electron redox potentials for a series of small models based on the diiron hydrogenase enzymes in the presence of acetonitrile (MeCN). The solvation effects in MeCN are incorporated via a self-consistent reaction field (SCRF) using the polarized continuum model (PCM). The calculated redox potentials reproduce the trends in experimental data with an average error of only 0.12 V using the BP86 functional, whereas comparing results with the B3LYP functional require a systematic shift of -0.82 and -0.53 V for oxidation and reduction, respectively. The bonding orbitals and d-electron populations were examined using Mulliken population analysis, and the results were used to rationalize the calculated and observed redox potentials. These studies demonstrate that the redox potential correlates with the empirical spectrochemical series for the ligands, as well as with the amount of electron density donated by the ligand onto the Fe centers.     

Direct profiling of phospholipids and lysophospholipids in rat brain sections after ischemic stroke

Stroke, a deleterious cerebrovascular event, is caused by a critical reduction in the blood flow to the brain parenchyma that leads to brain injury and loss of brain functions. The inflammatory responses following ischemia often aggravate the neurological damage. Several pro‐inflammatory mediators released after stroke are closely related to the metabolism of phospholipids. In this study we directly profiled the changes in phospholipids in the infarcted rat cerebral cortex 24 hours after middle cerebral artery occlusion (MCAO) using matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS). Several phosphatidylcholine (PC) species and sphingomyelin (SM) were significantly decreased after infarction. The cationization pattern of the remaining PCs showed a prominent shift from a mostly potassiated or protonated form to a predominantly sodiated pattern. Stroke also elevated the lysophosphatidylcholines (LPCs) and heme in tissue. The isobaric pairs in PC and LPC classes were resolved by masses through their respective alkali metal adducts in the presence of CsCl. The major fatty acyl LPC species were also structurally confirmed by MALDI‐MS/MS. Overall, the results described the changes in PC and LPC species in the infarcted rat cortex. The elevated tissue levels of LPCs and heme signify the ongoing pathological lipid breakdown and the state of parenchymal inflammation. The elevated LPC level in tissue suggests a means of intervention through lysophospholipid metabolism that could potentially benefit the management of stroke and other acute neurological injuries. Copyright © 2010 John Wiley & Sons, Ltd.     

Synthesis of a mitochondria-targeted spin trap using a novel Parham-type cyclization

A new cyclic nitrone spin trap, [4-(3′,3′-dibutyl-2′-oxy-3′H-isoindol-5′-yloxy)butyl]triphenylphosphonium bromide (MitoSpin), bearing a lipophilic cation has been prepared by a route that involves a novel Parham-type lithiation-cyclization of an isocyanate to give the isoindolinone core. MitoSpin accumulates in a membrane potential dependent way in energized mitochondria and its oxidation could potentially be used in the study of oxidative stress resulting from reactive oxygen species generated in mitochondria.     

The effect of proton irradiation on the melting and isothermal crystallization of poly(ether‐ether‐ketone)

Amorphous poly(ether‐ether‐ketone) (PEEK) progressively crosslinks on irradiation with 11.0 MeV protons, and this has a marked effect on the extent of crystallinity that subsequently develops and on the kinetics of the high temperature isothermal crystallization. The extent of crystallinity with time was analyzed using the Avrami equation, and the temperature dependence of the rate constants was analyzed in terms of nucleation theory. While irradiation inhibits the overall rates of crystallization by the reduction in the mobility of the chain segments as observed by the progressive increase in the glass transition temperature, it also alters the fold surface free energy. The observed melting points were consistent with depression of the equilibrium melting point by the crosslinks produced by irradiation. These two effects alone are sufficient to account for the inhibition of crystallization on irradiation of PEEK by protons. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 1094–1103, 2008     

Effects of electrolyte concentration on the rotational dynamics of resorufin

We report on the rotational diffusion dynamics of the anionic chromophore resorufin in water and N-octyl-2-pyrrolidone (NOP) solutions as a function of solution electrolyte concentration. Our data show that resorufin exhibits a single exponential anisotropy decay in aqueous solutions containing up to 0.1 M lithium perchlorate (LiClO(4)). In contrast to the observed behavior of resorufin in pure NOP, where biexponential decay occurs, we also observe a single exponential anisotropy decay for resorufin in NOP with the addition of up to 0.1 M tetrabutylammonium bromide (TBAB) or tetraoctylammonium bromide (TOAB). For resorufin in NOP, the reorientation time constant increases with increasing electrolyte concentration, consistent with complexation between the resorufin anion and the electrolyte ammonium cation. We observe a qualitatively different trend in the aqueous resorufin solutions and understand these data for both solvent systems in the context of interactions between the chromophore and cationic species present.     

Development and applications of whole cell biosensors for ecotoxicity testing

Whole cell biosensors are the focus of considerable and increasing interest worldwide as methods for detecting and quantifying environmental toxicity, including biochemical oxygen demand (BOD), heavy metals, antibiotics, pesticides and herbicides. This review follows the development of whole cell biosensors from attempts to utilise changes in cellular metabolism to determine BOD and general toxicity, through the exploitation of unique metabolic pathways to detect specific toxicants, to the increasingly widespread use of genetic engineering to build new, and modify existing, sensing pathways.     

New linear chain compounds based on an aza macrocyclic copper(II) complex with halide ions

We have shown by X-ray diffraction analysis that participation of functional groups on the macrocycle in formation of hydrogen bonds promotes formation of crystal lattices with previously undescribed linear polymer chains ... Cu ... Hal ... Cu ... Hal ... We have used spectral methods to confirm the presence of a Cu-Hal interaction, which makes these compounds promising for design of new materials with anisotropic physical properties. Deceased Translated from Teoreticheskaya i éksperimental'naya Khimiya, Vol. 34, No. 6, pp. 355–359, November–December 1998.