Ligand specificity of CS-35, a monoclonal antibody that recognizes mycobacterial lipoarabinomannan: a model system for oligofuranoside-protein recognition

The CS-35 antibody is widely used in the characterization of glycans containing D-arabinofuranose residues, in particular polysaccharides present in the mycobacterial cell wall. A detailed understanding of the combining site of this antibody and the measurement of its binding to different ligands is of interest as this knowledge will have implications in the characterization of arabinofuranose-containing glycoconjugates that are increasingly recognized as important biological molecules. Of even greater significance is that an in-depth study of this carbohydrate-protein interaction will provide insights into the mechanisms by which oligosaccharides containing furanose rings are bound by proteins, an area that has, to date, received little attention. This system has been refractory to X-ray crystallography, and thus we report here a study of the interaction of CS-35 with its ligands using a combination of chemical synthesis, mass spectrometry, titration microcalorimetry, and NMR spectroscopy. Through these investigations we have established that the binding pocket recognizes, as a minimum epitope, a linear tetrasaccharide motif and that the residues at the reducing and non-reducing end of the oligosaccharide are essential for tight binding. The residue at the non-reducing end appears to be bound in an aliphatic pocket, whereas the rest of the tetrasaccharide interacts more strongly with aromatic amino acids.     

MP2, DFT and ab initio calculations on thioxanthone

Density functional theory (DFT), HF and MP2 calculations have been carried out to investigate thioxanthone molecule using the standard 6-31+G(d,p) basis set. The results of MP2 calculations show a butterfly structure for thioxanthone. The calculated results show that the predicted geometry can well reproduce the structural parameters. The predicted vibrational frequencies were assigned and compared with experimental IR spectra. A good harmony between theory and experiment is found. The theoretical electronic absorption spectra have been calculated using CIS method. ¹³C and ¹H NMR of the title compound have been calculated by means of B3LYP density functional method with 6-31+G(d,p) basis set. The comparison of the experimental and the theoretical results indicate that density functional B3LYP method is able to provide satisfactory results for predicting NMR properties.     

Reactions of 2(3H)-furanones

This review article presents a systematic overview of approaches and reactivity data for 2(3H)-furanones, published from 1999 until 2018.     

Methanesulfonic Acid/SiO2 as an Efficient Combination for the Synthesis of 2-Substituted Aromatic and Aliphatic Benzothiazoles from Carboxylic Acids

Methanesulfonic acid/SiO₂ (1 mL/0.3 g) was found to be as an expeditious mixture in the synthesis of 2-substituted aromatic and aliphatic benzothiazoles at 140 °C using carboxylic acids. After a simple workup, benzothiazoles were obtained in good yields. Simplicity, use of widely available and diverse carboxylic acids, and easy handling of the reaction conditions are among the benefits of the method.     

Effect of addition of nano-magnetite on the hydration characteristics of hardened Portland cement and high slag cement pastes

In this investigation the effect of addition of magnetite nanoparticles on the hydration characteristics of both ordinary Portland cement (OPC) and high slag cement (HSC) pastes was studied. The cement pastes were prepared using a water/solid (W/S) mass ratio of 0.3 with addition of 0.05, 0.1, and 0.3 % of magnetic fluid Fe₃O₄ nanoparticles by mass of cement. An aqueous stable magnetic fluid containing Fe₃O₄ nanoparticles, with a mean diameter in the range of super-paramagnetism, was prepared via co-precipitation method from ferrous and ferric solutions. The admixed magnetite-cement pastes were examined for compressive strength, chemically combined water content, X-ray diffraction analysis, and differential scanning calorimetry. The results of compressive strength revealed that the hardened pastes made from OPC and HSC admixed with different amounts of magnetic fluid have higher compressive strength values than those of the neat cement OPC and HSC cement pastes at almost all ages of hydration. The results of chemically combined water content for the admixed cement pastes showed almost the same general trend and nearly comparable values as those of the neat cement pastes. From the XRD diffractograms obtained for the neat OPC and HSC cement pastes, the main hydration products identified are calcium silicate hydrates, portlandite, and calcium sulfoaluminate hydrates. Addition of magnetic fluid nanoparticles to both of OPC and HSC did not affect the main hydration products of the neat OPC or HSC cement in addition to one main basic difference, namely, the formation of calcium iron hydroxide silicate as a new hydration product with a reasonable hydraulic character.     

Improvement of acid resistance of Portland cement pastes using rice husk ash and cement kiln dust as additives

This paper represents a laboratory study on the acid resistance of hardened ordinary Portland cement (OPC) and blended OPC pastes at two different curing temperatures. The blended materials used are rice husk ash (RHA) and cement kiln dust (CKD). The blended cement pastes were prepared using a water/solid (W/S) ratio of 0.3. The effects of immersion in deionized water (pH 7) and sulfuric acid solutions (pH 1, 2 and 3) at two temperatures (20 and 50 °C) on the compressive strength and phase composition of the various hardened blended cement pastes were studied. The results of compressive strength revealed that the increase of curing temperature from 20 to 50 °C resulted in increase the reduction of compressive strength due to acid attack up 2 months, but the resistance to sulfuric acid attack increases after that time due to the formation of crystalline calcium silicate hydrates (CSH) which have higher resistance to acid attack than the amorphous CSH formed at the early ages of hydration. The presence of RHA and CKD improves the resistance to sulfuric acid attack at both curing conditions. From the results of X-ray diffraction analysis and differential scanning calorimetric technique curves, the main hydration products identified are CSH, portlandite, and calcium sulfoaluminate hydrates.     

Measurements of arsenite and arsenate contained in mining river waters and leached from contaminated sediments by sequential hydride generation flow injection analysis

In this work, a new analytical method for gasifiable compounds based on sequential hydride generation flow injection analysis (SHGFIA) was applied to water analysis and leaching investigation. For water analysis, it was confirmed that 1 μg L⁻¹ As(III) and As(V) were stable for a few days when EDTA was added in the sample waters. Dissolved As(III) and total arsenic (As(III) + As(V)) were converted to AsH₃ in neutral and acidic medium, respectively, to transfer to a miniature gas scrubber (100 μL in absorber volume). The collected arsenic was successively measured by flow analysis based on molybdenum blue chemistry. With this system, changes in As(III) and As(V) concentrations of water placed with arsenic-contaminated-sediment was monitored in near real time. From these data, kinetic analyses were carried out and kinetic constant was obtained from plot of ln{(C^∞ − C)/C^∞} where C and C^∞ were leached arsenic concentration and its final concentration, respectively. It was found that rate of As(III) leaching was much faster than that of As(V) while As(V) leached more in amount compared to As(III). In this work, it was demonstrated that kinetic investigation is also one of the important application of flow analysis. The SHGFIA system showed excellent performance for leaching analysis of arsenic with discrimination of As(III) and As(V).     

On passing a non-Newtonian circulating tumor cell (CTC) through a deformation-based microfluidic chip

Circulating tumor cells (CTCs) are potential indicators of cancer. Detection of CTCs is important for diagnosing cancer at an early stage and predicting the effectiveness of cancer treatment. Among various devices, deformation-based CTC microchips have shown a strong promise for CTC detection. This type of devices involves a process where CTCs are trapped while allowing more deformable blood cells to squeeze through the filtration geometry at the specified operating pressure. For designing a reliable CTC microchip, in-depth understanding of the cell passing process through the deformation-based microfluidic device is of high value to the device performance enhancement. In this paper, the CTC squeezing process through a microfluidic filtering channel is studied with a non-Newtonian CTC model employed to account for shear-thinning properties of the cell. Detailed microscopic multiphase flow characteristics regarding the filtering process are discussed including the pressure signatures, flow details, cell deformation, and viscosity variation. Critical pressure for the non-Newtonian CTC at different flow rates is analyzed as it plays a crucial role in the device operation in ensuring a successful passing event. Our study provides insights into the non-Newtonian cell squeezing process, which can guide in the design and optimization of next-generation deformation-based CTC microfilters.