Chelation of transition metal ions by peptide nanoring

We have computationally studied the energetics and electronic structures of a chelate system where the guest cation is a transition metal (TM) and the host ligand is a peptide nanoring (PNR). The trapping of a TM cation by a cyclic peptide skeleton is primarily caused by the electrostatic interaction. The exchange interaction plays a secondary role in determining the relative stability in accordance with the spin multiplicity. An interesting feature of this chelate system is that a TM cation can also be trapped by the side-chain aromatic groups of the PNR via pi-d hybridization. However, the spin multiplicity of the system changes the trapped form. When the chelate system has spin singlet multiplicity, a Fe(2+) cation, for example, is not trapped by the single-phenyl group but is preferentially sandwiched by the two phenyl groups. In contrast, a Fe(2+) cation can be trapped by single as well as by double-phenyl groups when the chelate system has higher spin multiplicity, such as triplet and quintet. These two different trapping forms are caused by the difference in the number of valence electrons of TM cations. For this chelate system, the newly occupied molecular orbital (MO) has an interbenzene antibonding character. Therefore, an electron occupying this MO state favors the mutual separation of two benzene molecules. Because the electron occupation of this MO varies in accordance with the spin multiplicity, one can predict the preference for the single-phenyl-group trapping process rather than the double-phenyl-group process systematically as well as consistently.     

Nitroxyl radicals: electrochemical redox behaviour and structure-activity relationships

Comparative study of electrochemical redox behaviour of five different nitroxyl radicals leads to the direct correlation between one-electron redox potentials and group electronegativity of the beta-substituent on the ring. Beta-substituents with an electron-donating effect caused a negative shift in the one-electron oxidation and one-electron reduction potentials of the nitroxyl radicals. In a similar aspect, beta-substituents with an electron-withdrawing effect behaved oppositely.     

Photomechanical bending of salicylideneaniline crystals

Platelike microcrystals of N-3,5-di-tert-butylsalicylidene-3-nitroaniline repeatedly bend and straighten upon alternate irradiation with UV and visible light. The mechanism of bending was elucidated by X-ray crystallographic analyses before and after photoirradiation.     

Unified approach to catechin hetero-oligomers: first total synthesis of trimer EZ-EG-CA isolated from Ziziphus jujuba

A catechin hetero-trimer isolated from Ziziphus jujuba has been synthesized. Among three constituent monomers, (-)-epiafzelechin and (-)-epigallocatechin were prepared by de novo synthesis. Trimer formation relied on the unified approach to oligomers based on the bromo-capping and the orthogonal activation, reaching the reported structure of the natural product.     

Generation of radical species from dihydropyrazines having DNA strand-breakage activity and other characteristics

The various biological activity of dihydropyrazines(DHPs)due to the radical generation potency has been described in previous papers. Detailed data about radical species generating be mentioned here. The electron spin resonance (ESR) spin-trapping technique revealed that DHPs generate free radical species such as ·OH, ·OOH, ·CHR(2) and ·CR(3). Oxygen radicals and two carbon-centered radicals were detected as adducts of the spin traps DMPO and DBNBS, respectively. All the 5,5-dimethyl-1-pyrroline-N-oxide (DMPO)- and 3,5-dibromo-4-nitrosobenzenesulfonate (DBNBS)-adducts of compounds DHP-1-8 exhibited approximately the same signal patterns, with various levels of intensity depending on the substituent of the dihydropyrazine ring. The ESR signal intensity of DHPs also increased remarkably upon addition of Cu(2+), resulting that the effects of DHPs were enhanced.     

Conformational transitions of cyclic D,L-peptides

Conformational transitions of cyclic D,L-hexapeptides have been studied by first-principles calculations. Geometry optimizations for 20 types of homoresidue cyclic D,L-hexapeptide revealed that the cyclic peptides have two types of energetically stable backbone (extended (E) and bound (B) types); and for each type, the amino acid side chains have two orientations (equatorial and axial). Among the four types of isomer [E-type equatorial (E(eq)), B-type equatorial (B(eq)), E-type axial (E(ax)), and B-type axial (B(ax))], B(ax) is the energetically most preferred by most of the 20 encoded amino acid residues, whereas E(ax) is the least preferred. A search for transition states indicated that six types of conformational transition are possible between the isomers of the cyclic peptide, i.e., the backbone-backbone conversions (E(eq)-B(eq) and E(ax)-B(ax) transitions), the side chain-side chain conversions (E(eq)-E(ax) and B(eq)-B(ax) transitions), and the simultaneous conversions of the backbone and the side-chain orientation (E(eq)-B(ax) and E(ax)-B(eq) transitions). All the six transitions proceed with the breaking of the high molecular symmetry (S(6)) and go through the triangular (C(3)) intermediate structure with either equatorial or axial side-chain orientation.     

Inactivation Activities of Ozonated Water,Slightly Acidic Electrolyzed Water and Ethanol against SARS-CoV-2

This study aimed to compare the SARS-CoV-2-inactivation activity and virucidal mechanisms of ozonated water (OW) with those of slightly acidic electrolyzed water (SAEW) and 70% ethanol (EtOH). SARS-CoV-2-inactivation activity was evaluated in a virus solution containing 1%, 20% or 40% fetal bovine serum (FBS) with OW, SAEW or EtOH at a virus-to-test solution ratio of 1:9, 1:19 or 1:99 for a reaction time of 20 s. EtOH showed the strongest virucidal activity, followed by SAEW and OW. Even though EtOH potently inactivated the virus despite the 40% FBS concentration, virus inactivation by OW and SAEW decreased in proportion to the increase in FBS concentration. Nevertheless, OW and SAEW showed potent virucidal activity with 40% FBS at a virus-to-test solution ratio of 1:99. Real-time PCR targeting the viral genome revealed that cycle threshold values in the OW and SAEW groups were significantly higher than those in the control group, suggesting that OW and SAEW disrupted the viral genome. Western blotting analysis targeting the recombinant viral spike protein S1 subunit showed a change in the specific band into a ladder upon treatment with OW and SAEW. OW and SAEW may cause conformational changes in the S1 subunit of the SARS-CoV-2 spike protein.     

Counterexamples to a conjecture of mader about cycles through specified vertices inn-edge-connected graphs

For each oddn≥3, we constructn-edge-connected graphsG with the following property: There are two verticesu andv inG such that for every cycleC inG passign throughu andv the graphG-E(C) is not (n-2)-edge-connected. HereE(C) denotes the set of edges ofC, and a cycle is allowed to pass through a vertex more than once.     

Synthesis of macrocyclic compounds containing the cycloheptatriene and tropylium ion unit

Crown compounds containing the cycloheptatriene and tropylium ion unit were synthesized from 1,6-dithiocyanatocycloheptatriene.     

Amplification of Dense Spectra of XeCl Excimer

Amplification process in an excimer laser of dense modes is studied. Rate-equations with wavelength dependence are used to reproduce its spectra. Two extreme cases are tried and in spite of the duration of the output pulse relative to the relaxation time, the short pulse limit is proved to describe well the oscillation process of individual mode.