Development of a method to consistently quantify the structural distance between scaffolds and to assess scaffold hopping potential

We introduce a method to determine a structural distance between any pair of molecular scaffolds. The development of this approach was motivated by the need to accurately evaluate scaffold hopping studies in virtual screening and medicinal chemistry and assess the degree of difficulty involved in facilitating a transition from one structure to another. In order to consistently derive structural distances, scaffolds of different composition and topology are subjected to molecular editing procedures that abstract from original scaffolds in a defined manner until compositional and topological equivalence can be established. Pairs of corresponding scaffold representations are transformed into one-dimensional atom sequences that are aligned using approaches adapted from biological sequence comparison. From best scoring atom sequence alignments, interscaffold distances are derived. The algorithm is evaluated at different levels including the analysis of a series of model scaffolds with defined chemical changes, a scaffold library, and scaffolds from reference compounds and hits of successful virtual screening applications. It is demonstrated that chemically intuitive scaffold distances are obtained for pairs of scaffolds with varying composition and topology. Distance threshold values for close and remote structural relationships between scaffolds are also determined. The methodology is made publicly available in order to provide a basis for a consistent assessment of scaffold hopping ability and to aid in the evaluation and comparison of virtual screening methods.     

Comparison of UPLC and HPLC for Analysis of Dietary Folates

Ultra performance liquid chromatography (UPLC) using small sub-2 ??m particles and high performance liquid chromatography (HPLC) were compared for separation and determination of the most common dietary folates; 5-methyltetrahydrofolate, tetrahydrofolate, 5-formyltetrahydrofolate, 10-formylfolic acid and folic acid. Two UPLC columns??Acquity BEH C₁₈ and Acquity HSS T3, and two HPLC columns with similar surface chemistry??Xbridge C₁₈ and Atlantis d18 were tested. When using UPLC, the signal-to-noise ratio could be improved by a factor of 2?C50 for different folate derivatives and the run time could be reduced fourfold without sacrificing separation efficiency. The applicability of UPLC to real food samples was demonstrated.     

neo‐Clerodane Diterpenoids from the Aerial Part of Scutellaria barbata

Three new neo‐clerodane diterpenoids, barbatellarines C–E ( 1 – 3 ), were isolated from the CHCl₃‐soluble fraction of the aerial part of Scutellaria barbata. Their chemical structures were elucidated by detailed analysis of NMR and MS data. Compounds 1 and 2 were C(13) epimers, which was confirmed by an NOE difference experiment and the NOESY spectrum. The relative configuration was determined on the basis of the ¹H‐NMR J‐value and NOE data, while the absolute configuration of the previously isolated analogue, barbatellarine B ( 4 ), as a representative member of the group, was assigned by CD analysis.     

Probing interactions in exploratory teaching: a case study

This study investigates an exploratory teaching style used in an undergraduate geometry course to help students identify an ellipse. We attempt to probe beneath the surface of exploration to understand how the actions of teachers can contribute to developing students’ competence in justifying an ellipse. We analyse the complex interactions between student, content, and teacher, and discuss explicit pedagogical strategies that help students develop a higher level of geometric reasoning. The findings indicate that students engaged in guided explorations by the teacher and in group discussions with peers were able to identify an ellipse and justify their reasoning.     

Conductive liquid crystalline compounds having a piperazine structure

New conductive thermotropic liquid crystalline materials having a piperazine ring in the central core: 1-[4-(9-decenyloxy)phenyl]-4-alkylpiperazines ( 6 ) were synthesized. The mesomorphic behaviours of these compounds and their conductivity in the liquid crystal phase were measured. The principal features of these compounds are to exhibit a smectic B phase around room temperature (for example 6 : Cr 50 SmB 81 I, °C) and to exhibit a large dark current (6d: 430 μA cm^-2, applied voltage 20 V, at 70°C) in the smectic B phase.     

Composite wraps for aging infra-structure

The post war years, with Australia's rapid economic growth, was the period which began the construction of much of the current infra-structure. However, there are now doubts on its durability and structural integrity. Composite repairs and external composite reinforcement, may well be one method for addressing the problems of aging infra-structure. To this end the present paper evaluates the ability of externally bonded composite wraps to increase the load carrying capacity of concrete columns and beams. In this study the failure loads were found to occur when the composite wraps reached a critical strain level.     

Durability of polyurethanes elastomers

The effect of thermal aging on three different elastomeric polyurethane adhesives was studied. Consequently, an attempt was made to predict the polyurethanes' service lifetimes from the changes in tensile properties, hardness of bulk specimens and adhesion strength properties (lap shear and butt joints) of polycarbonate bonded joints. Aging temperatures ranged from ambient to 70 °C (at 50% relative humidity) for durations from 20 days to 18 months. Experimental results were analyzed according to a kinetic rate theory and using limit values for the various properties. Consequently, service lifetimes were determined and compared to results from actual service life. Predictions of long-term performance from accelerated tests proved to be reasonable for the properties and materials studied.     

MR imaging findings in recurrent primary osseous Ewing sarcoma

The objective of this study was to determine the value of magnetic resonance (MR) imaging in diagnosing local recurrence of Ewing sarcoma. We retrospectively reviewed radiographs, Tc^99m-methylene diphosphonate (MDP) skeletal scintigraphy, computed tomography scans, and MR studies of 11 patients who had local recurrences of osseous Ewing sarcoma following initial responses to chemotherapy and local radiation. The MR images were compared to those of a control group of nine patients who had no evidence of relapse. T₁- and T₂-weighted MR images identified 9 of the 11 recurrences. Computed tomography was diagnostic in 4 of 6 cases evaluated, Tc^99m-MDP bone scintigraphy in 4 of 11 cases, and plain radiographs in 2 of 10. MR findings at relapse included changes in signal intensity, increased extent of abnormal marrow signal on T₁- and T₂-weighted images, and identification of a new soft tissue mass. These findings suggest that MR imaging is valuable in the routine follow-up of parimary osseous Ewing sarcoma.