Metal ion complexing properties of the highly preorganized ligand 2,9-bis(hydroxymethyl)-1,10-phenanthroline: a crystallographic and thermodynamic study

Metal ion complexing properties of the ligand 2,9-bis(hydroxymethyl)-1,10-phenanthroline (PDALC) are reported. For PDALC, the rigid 1,10-phenanthroline backbone leads to high levels of preorganization and enhanced selectivity for larger metal ions with an ionic radius of about 1.0 A that can fit well into the cleft of the ligand. Structures of PDALC complexes with two larger metal ions, Ca(II) and Pb(II), are reported. [Ca(PDALC) 2](ClO 4) 2 ( 1) is triclinic, Pi, a = 7.646(3), b = 13.927(4), c = 14.859(5) (A), alpha = 72.976(6), beta = 89.731(6), mu = 78.895(6) degrees , V = 1482.5(8) A (3), Z = 2, R = 0.0818. [Pb(PDALC)(ClO 4) 2] ( 2) is triclinic, Pi, a = 8.84380(10), b = 9.0751(15), c = 12.178(2) (A), alpha = 74.427(3), beta = 78.403(13), mu = 80.053(11) degrees , V = 915.0(2) A (3), Z = 2, R = 0.0665. In 1, the Ca(II) is eight-coordinate, with an average Ca-N of 2.501 A and Ca-O of 2.422 A. The structure of 1 suggests that Ca(II) is coordinated in a very low-strain manner in the two PDALC ligands. In 2, Pb(II) appears to be eight-coordinate, with coordination of PDALC and four O donors from perchlorates bridging between neighboring Pb atoms. The Pb has very short Pb-N bonds averaging 2.486 A and Pb-O bonds to the alcoholic groups of PDALC of 2.617 A. It is suggested that the Pb(II) has a stereochemically active lone pair situated on the Pb(II) opposite the two N donors of the PDALC, and in line with this, the Pb-L bonds become longer as one moves around the Pb from the sites of the two N donors to the proposed position of the lone pair. There are two oxygen donors from two perchlorates, nearer the N donors, with shorter Pb-O lengths averaging 2.623 A. Two oxygens from perchlorates nearer the proposed site of the lone pair form very long Pb-O bond lengths averaging 3.01 A. The Pb(II) also appears to coordinate in the cleft of PDALC in a low-strain manner. Formation constants are reported for PDALC in 0.1 M NaClO 4 at 25.0 degrees C. These show that, relative to 1,10-phenanthroline, the hydroxymethyl groups of PDALC produce a significant stabilization for large metal ions such as Cd(II) or Pb(II) that are able to fit in the cleft of PDALC but destabilize the complexes of metal ions such as Ni(II) or Cu(II) that are too small for the cleft.     

Use of on-line mass spectrometric detection in capillary electrochromatography

Capillary electrochromatography (CEC) is a liquid phase analytical separation technique that is generally carried out with packed capillary columns by electroosmotically driven mobile phase at high electric field strength. The analytes are separated by virtue of the differences in their distribution between the mobile and stationary phases and, if charged in their electrophoretic mobilities as well. It is thus considered a hybrid of liquid chromatography and capillary electrophoresis and is expected to combine the high peak efficiency of capillary zone electrophoresis (CZE) with the versatility and loading capacity of HPLC. This review explores the potential use of on-line mass spectrometric detection for CEC. It discusses key design issues that focus on the physical and electrical arrangement of the CEC column with respect to the electrospray orifice inlet. The salient features of the sheathless, sheath flow and liquid junction interfaces that are frequently employed while coupling a CEC column to an electrospray ionization mass spectrometry system are also highlighted. Possible configurations of the CEC column outlet that would obviate the need for pressurizing the capillary column are also presented. While coupling CEC with MS both the nature of the interface and the configuration of the column outlet will determine the optimal arrangement. The review also discusses bandspreading that occurs when a connecting tube is employed to transfer mobile phase from the column outlet to the atmospheric region of the electrospray source with a concomitant loss in sensitivity. Selected examples that highlight the potential of this technique for a wide range of applications are also presented.     

Radical Cyclisation of α‐Halo Aluminium Acetals: A Mechanistic Study

α‐Bromo aluminium acetals are suitable substrates for Ueno–Stork‐like radical cyclisations affording γ‐lactols and acid‐sensitive methylene‐γ‐lactols in high yields. The mechanistic study herein sets the scope and limitation of this reaction. The influence of the halide (or chalcogenide) atom X (X=Cl, Br, I, SPh, SePh) in the precursors α‐haloesters, as well as influence of the solvent and temperature was studied. The structure of the aluminium acetal intermediates resulting from the reduction of the corresponding α‐haloesters has been investigated by low‐temperature ¹³C‐INEPT diffusion‐ordered NMR spectroscopy (DOSY) experiments and quantum calculations, providing new insights into the structures of these thermally labile intermediates. Oxygen‐bridged dimeric structures with a planar Al₂O₂ ring are proposed for the least hindered aluminium acetals, while monomeric structures seem to prevail for the most hindered species. A comparison against the radical cyclisation of aluminium acetals derived from allyl and propargyl alcohols with the parent Ueno–Stork has been made at the BHandHLYP/6‐311++G(d,p) level of theory, highlighting mechanistic similarities and differences.     

Facile fabrication of poly(p-phenylene ethynylene)/colloidal silica composite for nucleic acid detection

Fabrication, characterization, and application of poly(phenylene ethynylene) (PPE)/silica composite particles are described. PPE is a class of conjugated polymers, which has been used for various sensory materials. However, its hydrophobic nature makes its application difficult in the aqueous phase, especially for biological substance detection. In this report, we utilized non-aqueous soluble PPE, 15 nm of colloidal silica particles, and aminosilane to fabricate a biosensory platform. The resulting composite showed high aqueous compatibility, large surface area, high quantum efficiency, and versatile chemical modification including oligonucleotide coupling. By monitoring the fluorescence quenching of PPE, we could detect a quencher-labeled target oligonucleotide specifically. Stern-Volmer (SV) analysis showed different accessibility of fluorophores (PPE) to a quencher labeled target oligonucleotide. The accessibility of fluorophores and SV constant are determined to be 0.54 and 4.2 x 10(7)M(-1), respectively, from a modified SV plot. This method will broaden the capability of conjugated polymers for the sensitive detection of biological substances.     

Sequence requirements and an optimization strategy for short antimicrobial peptides

Short antimicrobial host-defense peptides represent a possible alternative as lead structures to fight antibiotic resistant bacterial infections. Bac2A is a 12-mer linear variant of the naturally occurring bovine host defense peptide, bactenecin, and demonstrates moderate, broad-spectrum antimicrobial activity against Gram-positive and Gram-negative bacteria as well as against the yeast Candida albicans. With the assistance of a method involving peptide synthesis on a cellulose support, the primary sequence requirements for antimicrobial activity against the human pathogen Pseudomonas aeruginosa of 277 Bac2A variants were investigated by using a luciferase-based assay. Sequence scrambling of Bac2A led to activities ranging from superior or equivalent to Bac2A to inactive, indicating that good activity was not solely dependent on the composition of amino acids or the overall charge or hydrophobicity, but rather required particular linear sequence patterns. A QSAR computational analysis was applied to analyze the data resulting in a model that supported this sequence pattern hypothesis. The activity of selected peptides was confirmed by conventional minimal inhibitory concentration (MIC) analyses with a panel of human pathogen bacteria and fungi. Circular-dichroism (CD) spectroscopy with selected peptides in liposomes and membrane depolarization assays were consistent with a relationship between structure and activity. An additional optimization process was performed involving systematic amino acid substitutions of one of the optimal scrambled peptide variants, resulting in superior active peptide variants. This process provides a cost and time effective enrichment of new candidates for drug development, increasing the chances of finding pharmacologically relevant peptides.     

On the Transition from Tin-Rich to Antimony-Rich European White Soda-Glass Trade Beads for the Senecas of Northeastern North America

It has been shown that several modifications occurred, over the span of the 17th to 19th centuries, in the agents used to opacify European-made white soda-glass beads that were transmitted as trade goods to northeastern North America. Tin was used at the beginning of the 17th century, followed by Sb later in the century, and then by As during the 18th and 19th centuries. In an attempt to define more closely the transition from Sn-rich to Sb-rich white beads, we analyzed 198 white glass beads from a number of archaeological sites in western New York State. Chemical analysis shows that the arrival of Sb-white soda-glass trade beads began in this region during the period from approximately A.D. 1625–1640, and that they had completely replaced Sn-white beads by A.D. 1675. Specific bead chemistries link a number of the archaeological sites.     

Peptides—XXXV: Synthesis of the 17–26 fragment of a lysozyme analogue

The fully protected 17–26 fragment of a lysozyme analogue has been synthesised. A fragment condensation approach has been employed using the protected subfragments 17–19, 20–22 and 23–26. In the synthesis of the subfragments the use of the diphenylphosphinyl mixed anhydride method has been demonstrated.     

A spectrophotometric investigation into the complex formation between bismuth(III) and 2-mercaptoethanol in aqueous solution

Complex formation between bismuth(III) and 2-mercaptoethanol was studied at 25°C and I = 1.0 mol dm^?3 HClO₄. The results were used to test the validity of an empirical equation for the calculation of formation constants.