Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules

A new fluorogenic cyanine dye was synthesized and found to have low fluorescence quantum yield in fluid solution and in the presence of double-stranded DNA but 80-fold enhanced fluorescence in viscous glycerol solution. An RNA aptamer selected for binding to the new dye exhibits K(d) = 87 nM and 60-fold fluorescence enhancement. The dye-aptamer pair is a fluoromodule that can be incorporated into fluorescent sensors and labels.     

A Study on the Phytotoxic Potential of the Seasoning Herb Marjoram (Origanum majorana L.) Leaves

In the search of new alternatives for weed control, spices appear as an option with great potential. They are rich in bioactive natural products and edible, which might minimize toxicity hazard. Marjoram (Origanum majorana L.) is an aromatic herb that has been widely employed as a seasoning herb in Mediterranean countries. Although marjoram boasts a plethora of therapeutic properties (painkiller, antibiotic, treatment for intestinal disorders, etc.), the potential for its extracts for weed control is still to be more thoroughly explored. In order to determine their phytotoxic potential, marjoram leaves were subjected to different bioguided extraction processes, using water, ethyl acetate, acetone or methanol. The most active extract (acetone) was sequentially fractionated to identify its most active compounds. This fractionation led to the isolation and identification of 25 compounds that were classified as monoterpenes, diterpenes or flavonoids. Among them, a new compound named majoradiol and several compounds are described in marjoram for the first time. The phytotoxicity of the major compounds to etiolated wheat coleoptiles was compared against that of the commercial herbicide (Logran^®), with similar or higher activity in some cases. These results confirm the extraordinary potential of the extracts from this edible plant to develop safer and more environmentally friendly herbicides.     

Identification of the 109Xe and 105Te α-decay chain

The α-decay chain ¹⁰⁹Xe → ¹⁰⁵Te → ¹⁰¹Sn was identified at the Holifield Radioactive Ion Beam Facility. Advances in digital electronics have made possible the identification of both alpha emitters in the same experiment despite the disparate half-lives of 13 ±2 ms and 620 ±70 ns for ¹⁰⁹Xe and ¹⁰⁵Te, respectively. Two α-decay transitions were observed from ¹⁰⁹Xe with Q_α values of 4067 ±10 and 4217 ±8 keV. One transition between the ground states of ¹⁰⁵Te and ¹⁰¹Sn was observed with a Q_α value of 4889 ±6 keV. Using the measured half-lives, branching ratios, and Q_α values the reduced α-decay widths, δ², were determined. Comparison of the δ² value for ¹⁰⁵Te with ²¹³Po indicates a “superallowed" character in the α emission of ¹⁰⁵Te.     

Synthesis of C-11 modified mifepristone analog libraries

Substitution of the C-11 aniline of mifepristone can provide compounds with altered pharmacokinetic and pharmacodynamic (PK/PD) profiles that may find use for new indications. The development of new steroid intermediates and specialized library synthesis methods were required to enable the efficient preparation of structurally complex C-11 modified mifepristone analogs.     

Chlorination of uranium metal in molten NaCl-CaCl2 via bubbling HCl

Journal of Radioanalytical and Nuclear Chemistry - Molten chloride salt fast reactors (MCFRs) will require UCl3 dissolved in molten salt mixtures as fuel for nuclear fission. For infusing the salt...     

Synthetic non-peptide mimetics of alpha-helices

Proteins in nature fold into native conformations in which combinations of peripherally projected aliphatic, aromatic and ionic functionalities direct a wide range of properties. Alpha-helices, one of the most common protein secondary structures, serve as important recognition regions on protein surfaces for numerous protein-protein, protein-DNA and protein-RNA interactions. These interactions are characterized by conserved structural features within the alpha-helical domain. Rational design of structural mimetics of these domains with synthetic small molecules has proven an effective means to modulate such protein functions. In this tutorial review we discuss strategies that utilize synthetic small-molecule antagonists to selectively target essential protein-protein interactions involved in certain diseases. We also evaluate some of the protein-protein interactions that have been or are potential targets for alpha-helix mimetics.     

Synthesis,crystal structure and magnetic properties of a new dinuclear copper(II) amino acid complex [Cu2(l-arg)2(μ-HPO4-O)(μ-HPO4-O,O′)(μ-OH)] · (H3O) · (H2O)6

A novel dinuclear copper(II) complex with the amino acid l-arginine (l-arg), with mono and bidentate HPO₄²⁻ oxoanions and an OH⁻ anion. [Cu₂(l-arg)₂(μ-HPO₄-O)(μ-HPO₄-O,O′)(μ-OH)]⁻ · (H₃O)⁺ · 6H₂O (1) was prepared and its structure was determined by X-ray diffraction methods. The two independent copper ions are in a distorted square pyramidal coordination, each bonded to one l-arginine molecule. These two Cu(l-arg) units are bridged by two monoatomic equatorial–apical oxygen ligands belonging to a monodentate hydrogenphosphate group, and to the hydroxyl group. The copper ions in the dinuclear unit at d = 3.1948(8) Å are also connected by two equatorial oxygen belonging to a bidentate hydrogenphosphate. This dinuclear character and bridging scheme, not common for metal–amino acid compounds, is a consequence of the properties of the phosphate anions. The magnetic susceptibility at temperatures between 2 and 300 K and the isothermal magnetization curves at T = 2.29(1) K with applied fields up to 9 T were measured. The magnetic data indicate an antiferromagnetic intradinuclear exchange coupling J/k_B = −3.7(1) K and using a molecular field approximation we estimated a weaker ferromagnetic interaction J′/k_B ∼ 0.3 K between neighbour dinuclear units.     

Classical kinetic energy,quantum fluctuation terms and kinetic-energy functionals

We employ a recently formulated dequantization procedure to obtain an exact expression for the kinetic energy which is applicable to all kinetic-energy functionals. We express the kinetic energy of an N-electron system as the sum of an N-electron classical kinetic energy and an N-electron purely quantum kinetic energy arising from the quantum fluctuations that turn the classical momentum into the quantum momentum. This leads to an interesting analogy with Nelson’s stochastic approach to quantum mechanics, which we use to conceptually clarify the physical nature of part of the kinetic-energy functional in terms of statistical fluctuations and in direct correspondence with Fisher Information Theory. We show that the N-electron purely quantum kinetic energy can be written as the sum of the (one-electron) Weizsäcker term and an (N?1)-electron kinetic correlation term. We further show that the Weizsäcker term results from local fluctuations while the kinetic correlation term results from the nonlocal fluctuations. We then write the N-electron classical kinetic energy as the sum of the (one-electron) classical kinetic energy and another (N?1)-electron kinetic correlation term. For one-electron orbitals (where kinetic correlation is neglected) we obtain an exact (albeit impractical) expression for the noninteracting kinetic energy as the sum of the classical kinetic energy and the Weizsäcker term. The classical kinetic energy is seen to be explicitly dependent on the electron phase, and this has implications for the development of accurate orbital-free kinetic-energy functionals. Also, there is a direct connection between the classical kinetic energy and the angular momentum and, across a row of the periodic table, the classical kinetic energy component of the noninteracting kinetic energy generally increases as Z increases. Finally, we underline that, although our aim in this paper is conceptual rather than practical, our results are potentially useful for the construction of improved kinetic-energy functionals.