Studies on pyrazines. 4.. The synthesis of 2-hydroxy-6-phenylpyrazine and its derivatives

This report describes a new method for the preparation of 2-hydroxy-6-phenylpyrazine ( 1 ). Amino acetal 5 was converted to glycyl amino acetal 7 by two steps in excellent yield. Cycliza-tion of 7 to 1 was accomplished in 33% yield by refluxing in acetic acid followed by oxidation with manganese dioxide. Compound 1 was also prepared by hydrolysis of amino- and methoxy-pyrazines 3 and 15 , derived from 2-hydroxy-5-phenylpyrazine ( 2 ) and the 2-amino homologue 4 , respectively, and by decarboxylation of 2-hydroxy-5-phenylpyrazinecarboxylic acid ( 19 ).     

Blue myoglobin reconstituted with an iron porphycene shows extremely high oxygen affinity

Myoglobin will be a good scaffold for engineering a function into proteins. To modulate the physiological function of myoglobin, almost all approaches have been demonstrated by site-directed mutagenesis, however, there are few studies which show a significant improvement in the function. In contrast, we focused on the replacement of heme in the protein with an artificial prosthetic group. Recently, we prepared a novel myoglobin reconstituted with an iron porphycene as a structural isomer of mesoheme. The bluish colored reconstituted myoglobin is relatively stable and the deoxymyoglobin reversibly binds ligands. Interestingly, the O2 affinity of the reconstituted myoglobin, 1.1 x 109 M-1, is a significant 1,400-fold higher than that of the native myoglobin. Furthermore, the unfavorable autoxidation kinetics show 7-fold decrease in rate for the reconstituted myoglobin relative to the native myoglobin, indicating the stable oxy-form against autoxidation. The net results come from the slow dissociation of the O2 ligand in the reconstituted myoglobin, koff = 0.11 s-1, because of the formation of strong hydrogen bond between His64 and negatively charged dioxygen. The present study indicates that the replacement of native heme with an artificially created prosthetic group will give us a unique function into a hemoprotein.     

A study of molecular vibrational relaxation mechanism in condensed phase based upon mixed quantum-classical molecular dynamics. II. Noncollisional mechanism for the relaxation of a polar solute in supercritical water

Mixed quantum-classical molecular dynamics method has been applied to vibrational relaxation of a hydrophilic model NO in supercritical water at various densities along an isotherm above the critical temperature. The relaxation rate was determined based on Fermi's golden rule at each state point and showed an inverse S-shaped curve as a function of bulk density. The hydration number was also calculated as a function of bulk density based on the calculated radial distribution function, which showed a good correlation with the relaxation rate. Change of the survival probability of the solute vibrational state was analyzed as a function of time together with the trajectory of the solvent water and the interaction with it. We will show that the solvent molecule resides near the solute molecule for a while and the solvent contributes to the relaxation by the random-noiselike Coulombic interaction only when it stays near the solute. After the solvent leaves the solute, it shows no contribution to the relaxation. The relaxation mechanism for this system is significantly different from the collisional one found for a nonpolar solute in nonpolar solvent in Paper I. Then, the relaxation rate is determined, on average, by the hydration number or local density of the solvent. Thus, the density dependence of the relaxation rate for the polar solute in supercritical water is apparently similar to that found for the nonpolar solute in nonpolar solvent, although the molecular process is quite different from each other.     

Hydrides with the perovskite structure: General bonding and stability considerations and the new representative CaNiH3

The stability and electronic structure of perovskite hydrides ABH₃ were investigated by means of first-principles density functional calculations. Two types of perovskite hydrides are distinguished: (1) When A and B are alkali and alkaline earth metals, the hydrides are ionic compounds with calculated band gaps of around 2 eV and higher. Their stability trend follows basically the concept of Goldschmidt's tolerance factor. (2) When A is one of the heavier alkaline earth metals (Ca, Sr, Ba) and B a transition metal, stable compounds ABH₃ result only when B is from the Fe, Co, or Ni groups. This stability trend is basically determined by effects associated with d band filling of both the transition metal and the hydride. In contrast to group (1) perovskites, the transition metal-containing compounds are metals. The synthesis of CaNiH₃ and its structure determination from CaNiD₃ is reported. This compound is a type (2) perovskite hydride with a fully occupied hydrogen position (CaNiD₃: a=3.551(4) Å, d_Ni-D=1.776(2) Å). Its stability is discussed with respect to transition metal hydrides with complex anions (e.g., Mg₂NiH₄, Na₂PdH₂, Sr₂PdH₄).     

Theoretical study on spin alignments in ferromagnetic heterospin chains with competing exchange interactions: a generalized ferrimagnetic system containing organic biradicals in the singlet ground state

Spin alignments in heterospin chains are examined from numerical calculations of model spin Hamiltonians. The Hamiltonians of the heterospin chains mimic an open-shell molecular assemblage composed of an organic biradical in a singlet (S = 0) ground state and a doublet (S = 1/2) monoradical, which are coupled by intermolecular ferromagnetic exchange interactions. It is found from numerical calculations of the spin Hamiltonians that the spin value S2 of the ground-state singlet biradical embedded in the exchange-coupled assemblage deviates from zero and contributes to the bulk magnetization. The alternating chain is found to have two kinds of ground spin states, a high- and a low-spin state. All the spins are parallel to each other in the high-spin state, which is characterized by the spin correlation function of (S(i).S(j)) = 0.25. On the other hand, the spin alignment in the low-spin state is found to be dependent on the topology of the intermolecular exchange interactions. The energy preference of the two states depends on the relative amplitude of the exchange interactions in the chain. The intermolecular ferromagnetic couplings are competing in the ground-state singlet biradical with the intramolecular antiferromagnetic interaction. The appearance of the two kinds of ground states is attributed to a quantum spin frustration effect inherent in the triangular motif of the competing interactions. Magnetic properties of a zigzag chain complex composed of a nitronyl nitroxide biradical with a singlet ground state and Cu(hfac)2 are examined on the basis of the theoretical calculations. The vanishing magnetic moments, or the product of susceptibility and temperature chiT, at low temperatures observed for the complex are consistent with those of the low-spin state predicted in the theoretical calculations.     

Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5)

Parallel G-quadruplexes formed from oligonucleotide sequences, d(TTAGn), where n = 3-5, have been shown to form a dimer through end-to-end stacking of 3'-terminal G-tetrads. The monomers and dimers of the G-quadruplexes are in dynamic equilibrium with an exchange rate of approximately 1 s-1. A thermodynamic study demonstrated that the dimerization of the G-quadruplexes is largely enthalpic in origin.     

Low-capacity cation-exchange chromatography of ultraviolet-absorbing urinary basic metabolites using a reversed-phase column coated with hexadecylsulfonate

A low-capacity cation-exchange HPLC method for the determination of UV-absorbing organic cations such as amino acids, histidine dipeptides, and creatinine was developed. A commercially available reversed-phase column was dynamically coated with hexadecylsulfonate, and was successfully used for the cation-exchange separation with ethylenediammonium eluting ion at pH 2.5. The coated column was enough stable for the specific use with a completely aqueous mobile phase at low and constant pH; and the day-to-day reproducibility for retention time was 0.9-1.7% of RSD (relative standard deviation). The linear relation between concentrations and detector responses (area) by using a photodiode-array UV detection at 210 nm ranged from 0.2 to 1000 microM (sample size 50 microl) for 1-methylhistidine, 3-methylhistidine, histidine, creatinine, anserine, carnosine, and homocarnosine, and from 0.5 to 2000 microM for creatine, tyrosine, and phenylalanine, with less than 5% of RSD. The UV spectrum (190-300 nm) obtained during chromatography was very indicative for each analyte. Overall recoveries were 97-104%. The developed HPLC method in conjunction with preliminary fractionation technique could be applied to the analysis of urine of patient with metabolic disorder such as phenylketonuria.     

Molecular orbital calculation of Mössbauer parameters for tin compounds in low temperature matrices

Mössbauer parameters of tin compounds, Sn(CH₃)_nCl_4–n (n=0, 1, 2, 3, 4), isolated in low temperature matrices are correlated with electronic properties at the tin nuclei obtained by molecular orbital calculations. The Mössbauer isomer shift and quadrupole splitting show good correlation with electron density and electric field gradient estimated by molecular orbital calculations, respectively. Structures of novel species (Sn(CH₃)₂CH₂ and [Sn(CH₃)₂CH₂]₂) produced via photodissociation of Sn(CH₃)₄ in low temperature matrices were estimated by means of molecular orbital calculations as compared with Mössbauer parameters.     

Stereoselective synthesis of cis- and trans-2,3-disubstituted eight-membered medium-ring ethers based on Ireland-Claisen rearrangement of 3-alkoxy-2-propenyl glycolate esters and ring-closing olefin metathesis

A simple stereoselective synthesis of cis- and trans-2,3-disubstituted medium-sized cyclic ethers has been developed based on geometry-selective synthesis of 3-alkoxy-2-propenyl glycolate esters, Ireland-Claisen rearrangement of the glycolate esters, and ring-closing olefin metathesis.     

Enantioselective total synthesis of (+)-azimine and (+)-carpaine

[reaction: see text] The enantioselective total syntheses of (+)-azimine and (+)-carpaine have been developed, starting with (S)-1,2,4-butanetriol as a single source of chirality. The key common feature in these syntheses involves stereoselective intramolecular hetero-Diels-Alder reaction of an acylnitroso compound. The critical macrocyclic dilactonization of the N-Cbz derivatives of azimic acid and carpamic acid was efficiently achieved by using the Yamguchi macrocyclization conditions.