Phase transition and conductive acceleration of phosphonium-cation-based room-temperature ionic liquid

An unusual ionic conduction phenomenon related to the phase transition of a novel phosphonium-cation-based room-temperature ionic liquid (RTIL) is reported; we found that in the phase change upon cooling, a clear increase in ionic conductivity was seen as the temperature was lowered, which differs from widely known conventional RTILs; clearly, our finding of abnormality of the correlation between temperature change and ionic conduction is the first observation in the electrolyte field.     

Amide I infrared spectral features characteristic of some untypical conformations appearing in the structures suggested for amyloids

Amide I infrared (IR) spectral features are studied, by using the density functional theoretical method, for two untypical (but possibly rather prevalent) structures inspired from those recently suggested for amyloids: a structure consisting of loop regions in the (alpha L, alpha R) conformation stacked to form an alpha-sheet, and a structure involving some main-chain peptide groups (of any residues) and some side-chain amide groups of glutamine and asparagine residues closely located with each other. The amide I vibrational (off-diagonal) coupling constants are examined by extracting them from the calculated Cartesian-based force constants with the average partial vector method and by comparing them with those estimated on the basis of the transition dipole coupling mechanism. It is suggested that the amide I IR band characteristic of the alpha-sheet conformation in dry environment (without hydrogen bonding to solvent water molecules) is located in a high-frequency region (approximately >1670 cm(-1), somewhat higher than that of alpha-helix), because of the dependence of the diagonal (uncoupled) frequency and the off-diagonal coupling constant on the Phi and Psi dihedral angles. It is also shown that the amide I vibrations of the closely located peptide and amide groups are strongly coupled through-space with each other, and in the presence of this type of strong vibrational coupling, a noticeable change in the IR intensity upon (13)C=O substitution may occur even for a mode that arises mainly from an unsubstituted group and is not much shifted in frequency. The meaning of these results in the interpretation of observed amide I spectral profiles, especially the possible usefulness of IR spectroscopic measurements for detecting those untypical structures in the process of amyloid formation, is also discussed.     

Electron transport in a pi-stacking molecular chain

We have investigated the electronic structure and transport properties of a pi-stacking molecular chain which is covalently bonded to a H/Si(100) surface, using the first-principles density functional theory approach combined with Green's function method. The highest occupied molecular orbital (HOMO) dispersion is remarkably reduced, but remains noticeable ( approximately 0.1 eV), when a short pi-stacking styrene wire is cut from an infinitely long wire and sandwiched between metal electrodes. We find that the styrene chain's HOMO and lowest unoccupied molecular orbital (LUMO) states are not separated from Si, indicating that it does not work as a wire. By substituting -NO2 or -NH2 for the top -H of styrene, we are able to shift the position of the HOMO and LUMO with respect to the Fermi level. More importantly, we find that the HOMO of styrene-NH2 falls into the band gap of the substrate and is localized in the pi-stacking chain, which is what we need for a wire to be electrically separated from the substrate. The conductance of such an assembly is comparable to that of Au/benzene dithiolate/Au wire based on chemical bonding, and its tunability makes it a promising system for a molecular device.     

Evaluation method for linking methamphetamine seizures using stable carbon and nitrogen isotopic compositions: a complementary study with impurity profiling

Drug profiling, extraction of physical and/or chemical profiles from abused drug samples, is useful for inferring and characterizing links between samples originating from the same and different seizures, and supports drug crime investigations. We describe an evaluation method for linking methamphetamine (MA) seizures using stable carbon and nitrogen isotopic compositions concurrently with gas chromatographic impurity profiling, which is one of the major methods of drug profiling. Several sets of MA seized in Japan, whose investigative information indicated linkages, were analyzed. The impurity profile of each set of seizures was quite similar and hierarchical cluster analysis showed a sample classification that was relatively consistent with the investigative information. The stable carbon and nitrogen isotopic compositions of the MA seizures varied between -29.40 and -24.90 (delta(13)C) and -2.29 and 5.94 (delta(15)N), respectively. In the delta(13)C-delta(15)N graph, MA seizures were classified into seven groups, probably reflecting different origins. The size of the cluster in the isotopic-composition graph was determined by pooled standard deviations (s(p)), the pooled estimates of measurement uncertainty. The sizes of the clusters were less than 6s(p) and the linkages between the MA seizures from the isotopic compositions were consistent with the impurity profiling and investigative information. The results showed that complementary use of stable-isotopic compositions with impurity profiling provides useful information for evaluating the links between seizures.     

A reactive bond orbital investigation of the Diels-Alder reaction between 1,3-butadiene and ethylene: Energy decomposition, state correlation diagram, and electron density analyses

The reactive bond orbital (RBO) method (Hirao, Chem Phys Lett 2007, 443, 141) is extended and applied to the Diels-Alder reaction between 1,3-butadiene and ethylene, with the aim of understanding the nature of their interaction. The roles of distortion, electrostatic, exchange, polarization, and charge transfer (CT) interaction energies at the transition state of the reaction are evaluated by means of RBO energy decomposition analysis. The effects of the hypothetical interactions on electron density redistribution are also identified by analysis based on the RBO method. CT is shown to play essential roles in the new bond formation between the reacting molecules and their internal bond order alterations. However, each of the CT interactions from butadiene to ethylene and from ethylene to butadiene does not necessarily contribute to the bond-order alteration process effectively. A state correlation diagram approach based on the RBO method is also proposed, and its usefulness in understanding the origin of the barrier in the Diels-Alder reaction is demonstrated.     

Carbon nanotube motors driven by carbon nanotube

We propose a new type of carbon nanotube (CNT) motor composed of a single-wall CNT (SWCNT) and a double-wall CNT (DWCNT), that are in mechanical contact. The rotational motion of our CNT motor is controllable by the translational motion of the SWCNT along the axis of the DWCNT. From molecular dynamics simulations, we show how our CNT motor can be driven in a controlled manner.     

CCSD calculations on C(14), C(18), and C(22) carbon clusters

The structure and energetics of the ring isomers of C(4n+2) (n=3-5) carbon clusters were studied by using coupled-cluster singles and doubles excitation theory to overcome the vast differences existing in the literature. The results obtained in the present study clearly indicate that C(14), C(18), and C(22) carbon rings have bond-length and bond-angle alternated acetylenic minimum energy structures. Contrarily, density functional theory calculations were unable to predict these acetylenic-type structures and they ended up with the cumulenic structures. It is found from the coupled-cluster studies that the lowest-energy ring isomer for the first two members of C(4n+2) series is a bond-angle alternated cumulenic D((2n+1)h) symmetry structure while the same for the remaining members is a bond-length and bond-angle alternated C((2n+1)h) symmetry structure. In C(4n+2) carbon rings, Peierls-type distortion, transformation from bond-angle alternated to bond-length alternated minimum energy structures, occurs at C(14) carbon ring.     

Rapid determination of carbamate pesticides in food using dual counter-current chromatography directly interfaced with mass spectrometry

Dual counter-current chromatography (dual CCC)-tandem mass spectrometry (MS/MS) was successfully performed with a newly designed spiral column for dual CCC. The small column capacity required for directly coupling with electrospray MS/MS was accomplished by forming a rectangular spiral groove on a plastic disk and sealing it with a PTFE sheet. This novel dual CCC-MS/MS technique was successfully applied for the rapid determination of methomyl, fenobucarb and carbaryl pesticides in food. A two-phase solvent system of n-hexane-acetonitrile-0.1% formic acid (45:45:10) was suitable for both good dual CCC separation and sufficient ionization of pesticides. Recoveries of these three pesticides from mandarin orange and spinach samples fortified at 0.05 mg/kg were in the range of 93-107% with relative standard deviations of 2.4-3.8%.     

Finding important anharmonic terms in the sixth-order potential energy function by the scaled hypersphere search method: an application to vibrational analyses of molecules and clusters

A fitting method of the sixth-order potential energy function is proposed, where ab initio potential energy data for the fitting are sampled in directions containing maximal anharmonic downward distortions detected by the scaled hypersphere search (SHS) method. This technique has been applied to H2O, HCHO, HCOOH, C2H4, CH3OH, CH3CHO, CH3NH2, B2H6, (H2O)2, and (H2O)3, where, without using the symmetry, 176, 904, 1432, 2992, 2520, 2760, 3608, 6232, 768, and 1456 times single-point energy calculations, respectively, were required for obtaining anharmonic terms. Experimental IR peak positions of not only fundamentals but also overtones and combinations in the excitation energy range of 1000-4000 cm(-1) could be reproduced very accurately by the post-vibrational self-consistent field theory employing potential functions obtained by the present SHS based polynomial fitting method.     

In situ spectroscopy and spectroelectrochemistry of uranium in high-temperature alkali chloride molten salts

Soluble uranium chloride species, in the oxidation states of III+, IV+, V+, and VI+, have been chemically generated in high-temperature alkali chloride melts. These reactions were monitored by in situ electronic absorption spectroscopy. In situ X-ray absorption spectroscopy of uranium(VI) in a molten LiCl-KCl eutectic was used to determine the immediate coordination environment about the uranium. The dominant species in the melt was [UO 2Cl 4] (2-). Further analysis of the extended X-ray absorption fine structure data and Raman spectroscopy of the melts quenched back to room temperature indicated the possibility of ordering beyond the first coordination sphere of [UO 2Cl 4] (2-). The electrolytic generation of uranium(III) in a molten LiCl-KCl eutectic was also investigated. Anodic dissolution of uranium metal was found to be more efficient at producing uranium(III) in high-temperature melts than the cathodic reduction of uranium(IV). These high-temperature electrolytic processes were studied by in situ electronic absorption spectroelectrochemistry, and we have also developed in situ X-ray absorption spectroelectrochemistry techniques to probe both the uranium oxidation state and the uranium coordination environment in these melts.