Detection of mitochondrial DNA mutations using temporal temperature gradient gel electrophoresis

Mitochondrial disorders are a group of clinically and genetically heterogeneous diseases. Common recurrent mitochondrial DNA (mtDNA) point mutations account for the molecular defects of a small proportion of patients. In order to identify mtDNA mutations, comprehensive mutational analysis of the entire mitochondrial genome is necessary. We developed the temporal temperature gradient gel electrophoresis (TTGE) method to screen for mutations in mtDNA. The entire mitochondrial genome was amplified using 32 pairs of overlapping primers followed by TTGE analysis of the DNA fragments. TTGE method was first validated on 200 DNA fragments containing known mutations or polymorphisms. On TTGE, homoplasmic nucleotide substitutions show a single band shift and heteroplasmic mutations show multiple banding patterns. The known mutations or polymorphisms were correctly identified. TTGE was then used to screen for unknown mutations in the mitochondrial genome. DNA banding patterns, deviated from wild-type, suggestive of either homoplasmic or heteroplasmic mutations, were followed by direct DNA sequencing to identify the mutations. Numerous mutations and polymorphisms were detected. The results demonstrated that TTGE detects and distinguishes heteroplasmic mutations from homoplasmic polymorphisms. It also detects heteroplasmic changes in the background of a homoplasmic polymorphism. Overall, TTGE was proven to be a simple, rapid, sensitive, and effective mutation detection method.     

Biosorption of metal ions with Penicillium chrysogenum

Biosorption of metal ions with Penicillium chrysogenum mycelium is described in this article. Alkaline pretreatment was used to remove proteins and nucleic acids from cells, and this treatment increased the adsorption capacities, for Cr³⁺ from 18.6 mg g⁻¹ to 27.2 mg g⁻¹, for Ni²⁺ from 13.2 mg g⁻¹ to 19.2 mg g⁻¹, for Zn²⁺ from 6.8 mg g⁻¹ to 24.5 mg g⁻¹. The adsorption of metal ions was strongly pH dependent. The mycelium could beused for large-scale removal of Cr³⁺ from tannery wastewater. The results show that this inexpensive mycelium adsorbent has potential in industry because of its high adsorption capacity. The main chelating sites are amino groups (−NH₂) of chitosan in the mycelium. A new model is established, which describes the relation of adsorption of metal ions on pH according to amino group chelating with metal ions and H⁺. The relative errors of simulation for Cu²⁺, Ni²⁺, Zn²⁺, and Cr³⁺ are 4.66%, 5.45%, 11.55%, and 1.69%, respectively.     

Influence of the Br?nsted and Lewis Acid Sites in Platinum/Solid Acid Catalysts on the Hydrogenation of Benzene and Toluene

The hydrogenation of benzene and toluene was investigated over US-SSY, -Al₂O₃, and Ha1-MCM-41 supported platinum catalysts. The acidity of catalyst supports was measured by IR spectra of pyridine adsorption. On the Brönsted acid supported catalyst, both the hexacyclic saturation product and the pentacyclic one, the hydroisomerization product, were observed, and these two products were revealed to be primary reaction products. The two products were proposed to be formed competitively on Brönsted acid sites with carbonium ions as the reaction intermediate. By contrast, no hydroisomerization product was found on Lewis acid supported catalysts. It was inferred that the electron-deficient reaction intermediate formed on Lewis acids could not undertake any skeletal isomerization process to give a pentacyclic saturation product.     

Theoretical studies of the geometries of H2GeLiCl and its insertion reaction with R-H (R = F,OH, NH2)

The geometries and insertion reactions of germylene derivative H₂GeLiCl with R-H (R = F, OH, NH₂) have been investigated at the B3LYP/6-311+G^* level of theory. The potential barriers of the three reactions are 93.5, 151.3, and 194.1 kJ/mol, including the zero-point vibration energy corrections, respectively. The mechanisms of all the three reactions are identical, i.e., an intermediate has been located during the insertion reaction. The intermediate could dissociate to substituted germylene and LiCl as a barrier process. Correspondingly, the reaction free energies for the three reactions are −7.4, 49.9, and 64.4 kJ/mol, respectively.

     

Mesoscopic simulation of the aggregation behavior of fluorinated surfactant in aqueous solution

The aggregation behavior of fluorinated surfactant in aqueous solution was investigated using dissipative particle dynamics (DPD) simulation method. Simulation results show that fluorinated surfactants behave mainly as their hydrocarbon analogues, having similar sequences of phases and aggregate structures, which are capable of building micelle, hexagonal phase and lamellar phase. But fluorinated surfactants also show interesting differences from hydrocarbon analogues, which can easily form hexagonal and lamellar structures with comparative little curvature. They can also form ellipsoid or rod-like micelles even in very low concentrations instead of spheroid ones. The dynamic aggregation behavior of fluorinated surfactants, as well as the comparison with hydrogenated ones, was also investigated.     

Detection of antisperm antibody in human serum using a piezoelectric immunosensor based on mixed self-assembled monolayers

A novel piezoelectric immunosensor based on mixed self-assembled monolayers (mixed SAMs) formed by short-chain amine- and carboxyl-terminated thiols has been developed to immobilize antigens onto gold electrodes for detecting antisperm antibody (AsAb) in human serum samples. The properties and the enhanced performance of the affinity biosensor interface based on mixed SAMs are investigated. Most importantly, analytical results of several human serum samples using the developed technique are in satisfactory agreement with those given by the enzyme-linked immunosorbent assay (ELISA) method in the concentration ranging from 32.3 to 300.0 mU/ml. It means the procedure proposed in this paper is likely to have a great potential in research and may play an important clinical role in a few years later.     

Poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide)-g-poly(vinylpyrrolidone): association behavior in aqueous solution and interaction with anionic surfactants

In this work, we aimed to study the association and interaction behavior of poly(ethylene oxide)-b-poly(propylene oxide)-b-poly(ethylene oxide) block copolymers grafted with poly(vinylpyrrolidone). Critical micellization concentrations were determined using fluorescent probes (pyrene) and critical micellization temperatures characterizing temperature-dependent transitions from monomers to multimolecular micelles were measured. The thermal responsiveness of the copolymer is not affected by the grafting. The hydrodynamic radius of the graft copolymer micelles is found to be greater than that of the original copolymer micelles. The graft copolymer is found to form anisotropic aggregates. The structure of the graft copolymer micelles is less disrupted by the anionic surfactant sodium dodecyl sulfate, compared to the ungraft copolymer.     

Lycopodine‐Type Lycopodium Alkaloids from Huperzia serrata

Eleven Lycopodium alkaloids with a lycopodine‐type skeleton were isolated from the basic material of the whole plant of Huperzia serrata (Thunb .) Trev. (Huperziaceae). Among them, 12‐epilycodoline N‐oxide (=(12α,15R)‐12‐hydroxy‐15‐methyllycopodan‐5‐one N‐oxide; 1 ), 7‐hydroxylycopodine (=(15S)‐7‐hydroxy‐15‐methyllycopodan‐5‐one; 2 ), and 4,6α‐dihydroxylycopodine (=(6α,15R)‐4,6‐dihydroxy‐15‐methyllycopodan‐5‐one; 3 ) are new compounds. Their structures were identified spectroscopically, especially by means of 1D‐ and 2D‐NMR.     

TixNy团簇结构的密度泛函研究

采用杂化密度泛函方法(B3LYP)和有效核势基组预测了Ti_xN_y (x≤3, y≤2)团簇的结构及稳定性, 并分析了可能存在构型的电子结构. 结果表明Ti₂N中体系的自旋多重度由Ti原子决定. Ti₃N中随着N的配位数增加, N的负电荷增加, 平均每个Ti向N提供约0.3个电子. 从Ti₂N₂可能稳定构型分析, 成键数目越多, 能量上越有利, 且Ti—N键的数目的增加, 将削弱N—N间的成键.     

Orientational dynamics of water confined on a nanometer length scale in reverse micelles

The time-resolved orientational anisotropies of the OD hydroxyl stretch of dilute HOD in H(2)O confined on a nanometer length scale in sodium bis(2-ethylhexyl) sulfosuccinate (AOT) reverse micelles are studied using ultrafast infrared polarization and spectrally resolved pump-probe spectroscopy, and the results are compared to the same experiments on bulk water. The orientational anisotropy data for three water nanopool sizes (4.0, 2.4, and 1.7 nm) can be fitted well with biexponential decays. The biexponential decays are analyzed using a wobbling-in-a-cone model that involves fast orientational diffusion within a cone followed by slower, full orientational relaxation. The data provide the cone angles, the diffusion constants for motion within the cones, and the final diffusion constants as a function of the nanopool size. The two processes can be interpreted as a local angular fluctuation of the OD and a global hydrogen bond network rearrangement process. The trend in the relative amplitudes of the long and short exponential decays suggest an increasing rigidity as the nanopool size decreases. The trend in the long decay constants indicates a longer hydrogen bond network rearrangement time with decreasing reverse micelle size. The anisotropy measurements for the reverse micelles studied extrapolate to approximately 0.33 rather than the ideal value of 0.4, suggesting the presence of an initial inertial component in the anisotropy decay that is too fast to resolve. The very fast decay component is consistent with initial inertial orientational motion that is seen in published molecular-dynamics simulations of water in AOT reverse micelles. The angle over which the inertial orientational motion occurs is determined. The results are in semiquantitative agreement with the molecular-dynamics simulations.