SARS-CoV protease inhibitors design using virtual screening method from natural products libraries

Two natural products databases, the marine natural products database (MNPD) and the traditional Chinese medicines database (TCMD), were used to find novel structures of potent SARS-CoV protease inhibitors through virtual screening. Before the procedure, the databases were filtered by Lipinski's ROF and Xu's extension rules. The results were analyzed by statistic methods to eliminate the bias in target-based database screening toward higher molecular weight compounds for enhancing the hit rate. Eighteen lead compounds were recommended by the screening procedure. They were useful for experimental scientists in prioritizing drug candidates and studying the interaction mechanism. The binding mechanism was also analyzed between the best screening compound and the SARS protein.     

Efficient light harvesting and energy transfer in organic-inorganic hybrid multichromophoric materials

Thin films of silica hybrid materials consisting of two to three covalently bound organic chromophores at different ratios were conveniently synthesized and fabricated. The photophysical properties of these materials have been studied. The fluorescence spectra reveal complete fluorescence resonance energy transfer (FRET) from donor to acceptor, and the light-harvesting ability of these hybrid materials increases with increasing the molar fraction of donor chromophore. In a three-chromophore system, the energy is transferred from 300 to 530 nm successfully. Time-resolved fluorescence experiments are employed to elucidate the average rates and efficiencies (84-97%) of energy transfer in these organic/inorganic hybrid systems. The hybrid materials have been shown to provide antenna effect to facilitate energy transfer and light harvesting.     

Aza-Morita-Baylis-Hillman reactions of N-(benzylidene)polyfluoroanilines with methyl acrylate and acrylonitrile

Aza-Morita-Baylis-Hillman reactions of N-(benzylidene)polyfluoroanilines 1 with methyl acrylate or acrylonitrile were studied. It was found that Lewis base, solvent and reaction temperature can significantly affect the reaction. Using 3-hydroxyquinuclidine (3-HQD) as a Lewis base in the reactions of 1 with methyl acrylate in DMF, the normal aza-Morita-Baylis-Hillman adducts 3 were formed in moderate to excellent yields. For the reactions of 1 with acrylonitrile, 1,4-diazabicyclo[2.2.2]octane (DABCO) is the best Lewis base giving the corresponding aza-Morita-Baylis-Hillman adducts 4 as the sole product in good to moderate yield. However, upon treatment of 1 with acrolein 2c, the corresponding reaction did not occur even in the presence of a variety of catalysts.     

Heavy metal phosphate nanophases in silica: influence of radiolysis probed via f-electron state properties

We have assessed the feasibility of carrying out time- and wavelength-resolved laser-induced fluorescence measurements of radiation damage in glassy silica. The consequences of alpha decay of Es-253 in LaPO₄ nanophases embedded in silica were probed based on excitation of 5f states of Cm³⁺, Bk³⁺, and Es³⁺ ions. The recorded emission spectra and luminescence decays showed that alpha decay of Es-253 ejected Bk-249 decay daughter ions into the surrounding silica and created radiation damage within the LaPO₄ nanophases. This conclusion is consistent with predictions of an ion transport code commonly used to model ion implantation. Luminescence from the ⁶D_7/2 state of Cm³⁺was used as an internal standard. Ion-ion energy transfer dominated the dynamics of the observed emitting 5f states and strongly influenced the intensity of observed spectra. In appropriate sample materials, laser-induced fluorescence provides a powerful method for fundamental investigation of alpha-induced radiation damage in silica.     

Solvent effects on infrared spectra of methyl 4-hydroxybenzoate in pure organic solvents and in ethanol/CCl4 binary solvents

Infrared spectroscopy studies of methyl 4-hydroxybenzoate (MHB) in 17 different organic solvents and in ethanol/CCl4 binary solvent were undertaken to investigate the solvent-solute interactions. The frequencies of carbonyl stretching vibration nu(C=O) of MHB in single solvents were correlated with the solvent acceptor number (AN) and the linear solvation energy relationships (LSER). The assignments of the two bands of nu(C=O) of MHB in alcohols and the single one of that in non-alcoholic solvents were discussed. The shifts of nu(C=O) of MHB in ethanol/CCl4 binary solvents showed that several kinds of solute-solvent hydrogen bonding interactions coexisted in the mixture solvents, with a change in the mole fraction of ethanol in the binary solvents.     

Preparation and proton conductivity of poly(N‐methylbenzimidazole) doped with acid

To increase the solubility and film forming ability of polybenzimidazole (PBI), poly(N‐methylbenzimidazole) (PNMBI) with different degrees of methylation was synthesized. Chemical structure, degree of substitution, and solubility of PNMBI was studied. PNMBI is easier to be doped with acid than PBI. The basicity of PNMBI was improved with the introduction of methyl groups on the imidazole moiety. Effects of methylation degree, H₃PO₄ content and temperature on proton conductivity of PNMBI doped H₃PO₄ was studied. Proton conductivity of H₃PO₄ doped PNMBI‐1.2 membranes increases with increasing doping level. Temperature dependence of proton conductivity of H₃PO₄ doped PNMBI‐1.2 membranes follows the Arrhenius law. With an increase in the degree of substitution, proton conductivity of H₃PO₄ doped PNMBI decreases dramatically. The proton transport mechanism was also discussed. The proton conductivity of PNMBI/H₃PO₄ is mainly contributed by proton hopping or Grotthuss mechanism. Copyright © 2004 John Wiley & Sons, Ltd.     

ETC and Thermal Ligand Substitution in PhCCo3(CO)9 with 2,3-Bis(diphenylphosphino)-N-phenylmaleimide(bppm). X-Ray Diffraction Structure of Co3(CO)6[μ2,η2, η1-C(Ph)(O)](μ2-PPh2)

The reactivity of the bidentate ligand 2,3-bis(diphenylphosphino)-N-phenylmaleimide (bppm) with the tetrahedrane cluster PhCCo₃(CO)₉ under thermolysis and ETC conditions has been studied and found to ultimately give Co₃(CO)₆[μ₂,η²,η¹-C(Ph) ${\text{C}}{\text{ = }}{\text{ = }}{\text{C(PPh}}_{\text{2}} {\text{)C(O)NPhC}}$ (O)](μ₂-PPh₂) as the final product. The intermediate cluster compound PhCCo₃(CO)₇(bppm), which was observed by IR and ³¹P NMR spectroscopies, readily and rapidly transforms into the product cluster under the reactions conditions. The solid-state structure of Co₃(CO)₆[μ₂,η²,η¹-C(Ph)fptt(O)](μ₂-PPh$_{2})$ was unequivocally determined by X-ray crystallography. Co₃(CO)₆[μ₂, η², η¹-C(Ph)Õ(O)](μ₂-PPh₂) crystallizes in the monoclinic space group P2(1)/n, a = 11.825(5) Å, b = 31.20(1) Å, c = 11.831(5) Å, β = 108.720(7)°, V = 4134(7) ų, Z = 4, d _calc = 1.567 Mg/m³; R = 0.0350, R _w = 0.0817 for 4747 observed reflections with I > 2σ(I). The X-ray structure confirms the coupling of the benzylidyne ligand with the bppm ligand in Co₃(CO)₆[μ₂,η²,η¹-C(Ph)Õ(O)](μ₂-PPh₂). The course of the thermolysis reaction is identical to those reactions carried out with the related diphosphine ligands bma and bpcd. The utility of electron-transfer catalysis (ETC) in the preparation of PhCCo₃(CO)₇(bppm) is discussed relative to the reduction potential of the bppm ligand and the tricobalt cluster PhCCo₃(CO)₉.     

三烃基锡肟类化合物的合成及生物活性

共合成了１３个未见文献报道的三烃基锡肟衍生物，测定了它们的＾１ｈ，（＾１３Ｃ，＾１１９Ｓｎ）ＮＭＲ，ＩＲ和ＭＳ。结果表明此类化合物为四配位锡单体结构，生物活性测定结果表明部分化合物同时兼有杀菌、杀螨、除草多种活性。     

Thermally responsive polymeric micellar nanoparticles self-assembled from cholesteryl end-capped random poly(N-isopropylacrylamide-co-N,N-dimethylacrylamide): synthesis, temperature-sensitivity, and morphologies

Cholesteryl end-capped thermally responsive amphiphilic polymers with two different hydrophobic/hydrophilic chain-length ratios were synthesized from the hydroxyl-terminated random poly(N-isopropylacrylamide-co-N,N-dimethylacrylamide) and cholesteryl chloroformate. The hydroxyl-terminated precursor polymers with narrow molecular weight distributions were synthesized by free-radical polymerization using 2-hydroxyethanethiol as a chain-transfer agent. The aqueous solutions of the cholesteryl end-capped copolymers exhibited reversible phase transitions at temperatures slightly above human body temperature, with the lower critical solution temperature values being 37.7 and 38.2 degrees C, respectively. The critical micelle concentration values of the two cholesteryl end-capped polymers were 9 and 25 mg/L, respectively. Polymeric micellar nanoparticles were prepared from the amphiphilic polymers using a dialysis method as well as a direct dissolution method. Transmission electron microscope studies showed that the micellar nanoparticles existed in different morphologies, including spherical, star-like, and cuboid shapes. Pyrene as a model hydrophobic compound could be readily encapsulated in these polymeric nanoparticles, at loading levels of 1.0 and 0.8 mg/g for the two cholesteryl end-capped polymers, respectively. The temperature sensitivity and unusual morphology of these novel polymeric nanoparticles would make an interesting drug delivery system.     

An indium(III)–water chain based on an unusual acyclic water pentamer

An in situ reaction under hydro­thermal conditions leads to the formation of the title compound, diaqua­(pyridine‐2‐carboxyl­ato)­(pyridine‐2,6‐dicarboxyl­ato)indium(II) trihydrate, [In(C₆H₄NO₂)(C₇H₃NO₄)(H₂O)₂]·3H₂O, in which the central In^III atom is seven‐coordinated by one pyridine‐2,6‐di­carboxyl­ate ligand, one pyridine‐2‐carboxyl­ate ligand and two water mol­ecules in a penta­gonal–bipyramidal coordination environment. An indium(III)–water chain based on an unusual water pentamer is observed.