Structure of the Ligated Ag60 Nanoparticle [{Cl@Ag12}@Ag48(dppm)12] (where dppm=bis(diphenylphosphino)methane)

A novel bisphosphine ligated Ag₆₀ nanocluster, [{Cl@Ag₁₂}@Ag₄₈(dppm)₁₂], has been dis-covered and characterized by X-ray crystallography. It consists of a central chloride located inside an icosahedral silver core layer, which is further encased by a second shell of 48 silver atoms/ions, which are capped with 12 bis(diphenylphosphino)methane (dppm) ligands. Due to lack of sufficient material the cluster could not be further characterized by other methods. DFT calculations were carried out on the cation [{Cl@Ag₁₂}@Ag₄₈(dppm)₁₂]⁺ to determine if it corresponds to a superatom with a core count of n=58. The DFT optimized structure is in agreement with X-ray ndings, but the low value of the HOMO-LUMO gap does not support superatom stability.     

Role of the sulfhydryl group on the gas phase fragmentation reactions of protonated cysteine and cysteine containing peptides

The gas phase fragmentation reactions of protonated cysteine and cysteine-containing peptides have been studied using a combination of collisional activation in a tandem mass spectrometer and ab initio calculations [at the MP2(FC)/6-31G*//HF/6-31G* level of theory]. There are two major competing dissociation pathways for protonated cysteine involving: (i) loss of ammonia, and (ii) loss of the elements of [CH₂O₂]. MS/MS, MS/MS of selected ions formed by collisional activation in the electrospray ionization source as well as ab initio calculations have been carried out to determine the mechanisms of these reactions. The ab initio results reveal that the most stable [M + H − NH₃]⁺ isomer is an episulfonium ion (A), whereas the most stable [M + H − CH₂O₂]⁺ isomer is an immonium ion (B). The effect of the position of the cysteine residue on the fragmentation reactions of the [M + H]⁺ ions of all the possible simple dipeptide and tripeptide methyl esters containing one cysteine (where all other residues are glycine) has also been investigated. When cysteine is at the N-terminal position, NH₃ loss is observed, although the relative abundance of the resultant [M + H − NH₃]⁺ ion decreases with increasing peptide size. In contrast, when cysteine is at any other position, water loss is observed. The proposed mechanism for loss of H₂O is in competition with those channels leading to the formation of structurally relevant sequence ions.     

Electron capture dissociation of complexes of diacylglycerophosphocholine and divalent metal ions: Competition between charge reduction and radical induced phospholipid fragmentation

Divalent metal complexes of phosphocholines, [Metal(II)(L)(n)](2+) (where Metal=Cu(2+), Co(2+), Mg(2+), and Ca(2+), L=1,2-dihexanoyl-sn-glycero-3-phosphocholine [6:0/6:0GPCho] and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine [16:0/18:1GPCho] and n=2-5), were formed upon electrospray ionization mass spectrometry (ESI/MS) of 8 mM solution of phosphocholine (L) with 4 mM metal salt (Metal). The electron capture dissociation (ECD) reactions of these [Metal(II)(L)(n)](2+) complexes were examined via Fourier-transform ion-cyclotron resonance mass spectrometry. A rich and complex chemistry was observed, including charge reduction and fragmentation involving losses of a methyl radical, trimethylamine, and the acyl chains. The predominant reaction channel was dependent on the size (n) of the complex, the metal and ligand used, and the size of the acyl chain. Thus charge reduction dominates the ECD spectra of the larger phosphocholine, 16:0/18:1GPCho, but is largely absent in the smaller 6:0/6:0GPCho. For complexes of 16:0/18:1GPCho, n=4-5, fragmentation from the head group mainly occurs via loss of the methyl radical and trimethylamine. At n=3, the relative abundance of fragments due to loss of acyl chain radicals increases. The abundances of ions arising from these radical losses increase further for the n=2 complexes, thereby providing information on the composition and position of the 16:0 and 18:1 acyl groups. Thus ECD of metal complexes provides structurally useful information on the phosphocholine, including the nature of the head group, the acyl chains, and the positions of the acyl chains.     

The role of metal cation in electron-induced dissociation of tryptophan

The fragmentation of tryptophan (Trp) – metal complexes [Trp+M]⁺, where M = Cs, K, Na, Li and Ag, induced by 22 eV energy electrons was compared to [Trp+H]⁺. Additional insights were obtained through the study of collision-induced dissociation (CID) of [Trp+M]⁺ and through deuterium labelling. The electron-induced dissociation (EID) of [Trp+M]⁺ resulted in the formation of radical cations via the following pathways: (i) loss of M to form Trp^+?, (ii) loss of an H atom to form [(Trp-H)+M]^+?, and (iii) bond homolysis to form C₂H₄NO₂M^+?. Deuterium labelling suggests that H atom loss can occur from heteroatom and/or C–H positions. Other types of fragment ions observed include: C₉H₇NM⁺, C₉H₈N⁺, M⁺, C₂H₃NO₂M⁺, CO₂M⁺, C₁₀H₁₁N₂M⁺, C₁₀H₉NOM⁺. Formation of C₂H₄NO₂M^+? and C₉H₇NM⁺ cations suggests that the metal interacts with both the backbone and aromatic side chain, thus implicating π-interactions for all M. CID of [Trp+M]⁺ resulted in: loss of metal cation (for M = Cs and K); successive loss of NH₃ and CO as the dominant channel for M = Na, Li and Ag; formation of C₂H₃NO₂M⁺. Preliminary DFT calculations were carried out on [Trp+Na]⁺ and [(Trp-H)+Na]^+? which reveal that: the most stable conformation involves chelation by the backbone together with a $\pi $ -interaction with the indole side chain; loss of H atom from $\alpha $ -CH of the side chain is thermodynamically favoured over losses from other positions, with the resultant radical cation maintaining a (N, O, ring) chelated structure which is stabilized by conjugation.     

Hydroxyl groups on silica surface

Infrared (IR) gravimetric adsorption data show that the major adsorption sites on a silica surface are surface hydroxyl groups. Depending upon the temperature of pretreatment these may be either ‘freely vibrating’ or hydrogen bonded to each other. The adsorptive properties of each type of group are very different. Thus, whereas water will adsorb preferentially on the hydrogen-bonded hydroxyl groups, compounds containing lone-pair electrons adsorb preferentially on the freely vibrating hydroxyl groups. This physical adsorption in turn controls the order of chemical interaction with the groups. The freely vibrating hydroxyl groups are evidenced by a single, sharp IR band at 3747 cm^?1. However, both their physical adsorption and chemical reactivity show that they themselves are composed of two types of groups. This is clearly demonstrated by their chemical reactions with silane coupling agents.Small amounts of impurity have a gross effect on the chemical reactivity of the surface. The presence of small amounts of boron on the silica surface not only gives rise to specific adsorption sites of the Lewis acid type, but also alters the reactivity of the silanol group which (spectroscopically) appears unchanged. Thus, the kinetic order of the reaction of dichlorodimethylsilane with the surface hydroxyl groups is reduced from 1.6 order to 1.0 order after the surface has been purposely unpurified by the introduction of boron.The implications of these data in terms of the glass surface are discussed.     

Sources of artefacts in the electrospray ionization mass spectra of saturated diacylglycerophosphocholines: From condensed phase hydrolysis reactions through to gas phase intercluster reactions

The mass spectra of diacylglycerophosphocholine phospholipids comprised of saturated fatty acids (1,2-dipentanoyl-sn-glycero-3-phosphocholine (D5PC); 1,2-dihexanoyl-sn-glycero-3-phosphocholine (D6PC), and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (D14PC)) are sensitive to the electrospray ionization (ESI) conditions. When fresh solutions of phospholipid in 10 mM ammonium acetate are subjected to ESI, protonated oligomeric clusters, [DxPCn + H]+ (x = 5, 6, and 14) are observed in the following different types of mass spectrometers: 3D-quadrupole ion trap; linear ion trap, and triple quadrupole. The formation of the protonated cluster ions is not unique to the ion trap instruments, although they tend to be more abundant in these instruments. As the ESI solutions age, new ions are observed, which correspond to acid-catalyzed solution phase deacylation reactions. The collision induced dissociation fragmentation reactions of the oligomer cluster ions exhibit a distinct dependence on the cluster size, with the larger clusters (n > 2) simply fragmenting via the loss of lipid monomers. In contrast, the fragmentation of the dimeric cluster ion is unique, resulting in a number of additional reactions including covalent bond formation via intermolecular cluster SN2 reactions and SN2 transfer of a methyl group. The nature of the charge has a significant role in the formation of products via these intermolecular cluster reactions. Changing the head group to phosphoethanolamine "switches off" the SN2 reactions, while changing the cation from a proton to either a sodium or a potassium ion, diminishes the intermolecular reactions relative to monomer loss. Semi empirical PM3 calculations on [D6PC2 + H]+ suggest that the SN2 reactions are thermodynamically favored over simple monomer loss. These results have important implications in the field of lipidomics.