A complete shape characterization for molecular charge densities represented by Gaussian-type functions

An algorithm for a detailed 3-D characterization of the shapes of molecular charge distributions is implemented, tested and applied for a family of AB₂ molecules. The characterization is performed by computing a number of topological invariants (“shape groups”) associated with a continuum of molecular surfaces: the complete family of all electronic isodensity contours for the given molecules. These shape groups (the homology groups of truncated surfaces derived from isodensity contours) depend continuously on two parameters: a density value defining the density contour, and a reference curvature value, to which the local curvatures of the isodensity contours are compared. The electronic charge distribution is modeled by means of Gaussian-type functions. The method employs an explicit form of the charge density function in order to compute the curvature properties for the molecular surfaces analytically, from which the shape groups are derived by the algorithm. No visual inspection is required for the characterization and comparison of shapes of molecular charge densities, as these are done algorithmically by the computer. However, visual inspection of the results of the shape analysis is a possible option. For a given molecule, in a given nuclear configuration, the technique provides a two-dimensional shape map, displaying the distribution of shape groups as a function of the local curvature and the level set value (the value of the charge density at the contour). The computer program GSHAPE performs the analysis of shape maps automatically. This feature makes it potentially useful in the context of computer-aided drug design, where unbiased, automated shape characterization methods are valuable tools. As examples, several two-dimensional shape maps for simple systems are discussed. The changes induced in these maps by a change in the nuclear geometry, as well as by the changes of the nuclear charge, are also analyzed. The method is applicable to large biomolecules of interest if charge density information is available.     

Automatic Electronic Tongue for On-Line Detection and Quantification of Organophosphorus and Carbamate Pesticides Using Enzymatic Screen Printed Biosensors

This work presents an automatic system, based on an electronic tongue, for resolution of mixtures of three pesticides. Inhibition detections were performed during the steady state of biosensors response. Three biosensors were built using two enzymes, electric eel (EE), genetically-modified Drosophila melanogaster (B131), and electric eel co-immobilized with drosophila melanogaster (BH). Calibrations curves for paraoxon, dichorlvos, and carbofuran were performed in the ranges 0.4–50.4 µM, 0.01–1.01 µM, 0.01–0.41 µM with LOD of 3.91 × 10^?8, 6.30 × 10^?11, and 5.84 × 10^?10, respectively. An artificial neural network (ANN) was used to model the combined response of three pesticides. A set of 19 mixtures were prepared in order to train the artificial neural network, the modeling was validated with a set of 6 spiked samples of river water. The error and recovery yields were found in consistent with expected values.     

Effect of the Dispersing Agent on the Electrochemical Response of Glassy Carbon Electrodes Modified with Dispersions of Carbon Nanotubes

The electrochemical response of a glassy carbon electrode modified with carbon nanotubes (CNT) dispersed in two solvents, water and DMF, and two polymers, chitosan and Nafion is reported. The films were homogeneous when the dispersing agent was water or DMF. In the case of polymers, the surfaces present areas with different density of CNTs. A more sensitive electrochemical response was obtained when CNTs are dispersed in the solvents. In the case of CNT dispersed with polymers, the nature of the polymer demonstrated to be a critical parameter not only for dispersing the nanotubes but also for the electrochemical activity of the resulting electrodes.     

Dissolution and Doping of Polyaniline Emeraldine Base in Imidazolium Ionic Liquids Investigated by Spectroscopic Techniques

Polyaniline is a model molecular system in the study of conductive polymers. Ionic liquids, on the other hand, are becoming more and more a very convenient alternative for conventional organic solvents. The dissolution of polyaniline‐emeraldine base (PANI‐EB) in imidazolium ILs leads to its doping, as indicated by optical and resonance Raman spectroscopies. In this study, it is proposed that the interaction of PANI‐EB and imidazolium ILs involves the specific interaction of the quinoid moiety of the former with the imidazolium ring of the latter, an interpretation that is also based on N K‐edge XANES measurements of neat PANI‐EB, neat ILs, and of their solutions.

     

A Zn(II) luminescent complex with a Schiff base ligand: solution,computational and solid state studies

Abstract

A new mononuclear complex of zinc(II), [Zn(HL)₂]?2DMF (H₂L = (E)-N′-((E)-(hydroxyimino)butan-2-ylidene)salicyloylhydrazide, DMF = N,N-dimethylformamide), was prepared and characterized. Single-crystal X-ray crystallography revealed a six-coordinate zinc(II) surrounded by nitrogen of the oxime function and oxygen and distal nitrogens of the acylhydrazone group. This entity also exists in solution as demonstrated by ¹H-NMR and potentiometric titrations. The computational analysis showed that the molecular orbitals involved in the main electronic transitions of the complex species in solution are centered on the ligand with negligible contribution of the metal ion. The photophysical properties of the complex were evaluated in solution and in the solid state. Luminescence studies showed that the solid has a strong emission at 550 nm with a large Stokes shift with respect to absorption. The solid state fluorescence emission is ascribed to ligand-centered and/or ligand-to-ligand charge transfer transitions, following the DFT results in solution. A comparison with a previously reported mononuclear [Zn(HL)₂] allowed the investigation of the influence of DMF molecules in the structural packing and the luminescence properties.     

“Smart” Polymers: Physicochemical Characteristics and Applications in Bio-Separation Strategies

In recent years, smart polymers (SPs), which are also referred to as bio-responsive polymers, have gained considerable attention as a unique class of polymers and their applications have been increasing significantly. These so-called “smart” polymers, either synthetic or biological, have been defined as “polymers designed to respond or undergo physical and structural conformational changes/rearrangement in response to slight changes in their surrounding environment”. They are categorized as thermo-, pH-, electro- and magneto-responsive polymers. The advances in upstream bio-production stages and the high cost associated with downstream chromatographic techniques have pushed the development of new alternatives. In this context, the use of SPs, in combination with non-chromatographic technologies, represents a useful approach to the development of new downstream operation units. With the key scientific advancements, SPs have become the “next generation” of the bio-separation tool for eco-friendlier and cost-effective purification. This review describes the different characteristics and classifications of various “smart” polymers available for use in bio-separation strategy. Focus is also given to the recent advances in SP inclusion in the improvement of alternative non-chromatographic methods in downstream bioprocessings.     

Photochemistry of 6‐Formylpterin in Alkaline Medium

6‐formylpterin solutions at pH 11 were photolyzed at 350 nm at room temperature. The photochemical reactions were followed by UV/VIS spectrophotometry, thin layer chromatography (TLC), and high‐performance liquid chromatography (HPLC). In the presence of oxygen, 6‐carboxypterin is the only photoproduct detected by the analytical techniques mentioned. In the absence of oxygen, a new compound showing an absorbance maximum at 480 nm is observed. The latter compound is thermally oxidized very fast in the presence of oxygen to 6‐carboxypterin. The quantum yields of substrate disappearance and of photoproduct formation are reported     

Electrocatalysis of As(III) oxidation by cobalt oxide nanoparticles: measurement and modeling the effect of nanoparticle amount on As(III) oxidation potential

Journal of Solid State Electrochemistry - The performance of electrodes modified with electrochemically generated cobalt oxide nanoparticles for the oxidation of As(III) species was investigated by...