Ultrasensitive small molecule fluorogenic probe for human heparanase

Heparanase (HPA) is a critical enzyme involved in the remodeling of the extracellular matrix (ECM), and its elevated expression has been linked with diseases such as various types of cancer and inflammation. The detection of heparanase enzymatic activity holds tremendous value in the study of the cellular microenvironment, and search of molecular therapeutics targeting heparanase, however, no structurally defined probes are available for the detection of heparanase activity. Here we present the development of the first ultrasensitive fluorogenic small-molecule probe for heparanase enzymatic activity via tuning the electronic effect of the substrate. The probe exhibits a 756-fold fluorescence turn-on response in the presence of human heparanase, allowing one-step detection of heparanase activity in real-time with a picomolar detection limit. The high sensitivity and robustness of the probe are exemplified in a high-throughput screening assay for heparanase inhibitors.

Heparanase, a critical enzyme involved in the remodeling of the extracellular matrix, activates a disaccharide probe HADP to give a strong fluorescence signal.     

Synthesis and characterization of trifluoromethyl fluoroformyl peroxycarbonate,CF3OC(O)OOC(O)F

The synthesis of CF(3)OC(O)OOC(O)F is accomplished by the photolysis of a mixture of (CF(3)CO)(2)O, FC(O)C(O)F, CO, and O(2) at -15 degrees C using a low-pressure mercury lamp. The new peroxide is obtained in pure form in low yield after repeated trap-to-trap condensation and is characterized by NMR, IR, Raman, and UV spectroscopy. Geometrical parameters were studied by ab initio methods [B3LYP/6-311+G(d)]. At room temperature, CF(3)OC(O)OOC(O)F is stable for many days in the liquid or gaseous state. The melting point is -87 degrees C, and the boiling point is extrapolated to 45 degrees C from the vapor pressure curve log p = 8.384 - 1715/T (p/mbar, T/K). A possible mechanism for the formation of CF(3)OC(O)OOC(O)F is discussed, and its properties are compared with those of related compounds.     

Importance of chain-chain interactions on the band gap of trans-polyacetylene as predicted by second-order perturbation theory

We employ the Laplace-transformed second-order Moller-Plesset perturbation theory for periodic systems in its atomic orbital basis formulation to determine the geometric structure and band gap of interacting polyacetylene chains. We have studied single, double, and triple chains, and also two-dimensional crystals. We estimate from first principles the equilibrium interchain distance and setting angle, along with binding energy between trans-polyacetylene chains due to dispersion interactions. The dependence of the correlation corrected quasiparticle band gap on the intrachain and interchain geometric parameters is studied, obtaining that the gap of the compound structures is substantially reduced with respect to the single chain polymer.     

Estimation of third virial coefficients at low reduced temperatures

We use the Clausius–Clapeyron equation to calculate third virial coefficients at low reduced temperatures. This procedure gives an alternative to predict third virial coefficients in a region where the third virial coefficient is difficult to measure. We compare the results of this method with published third virial coefficient data. Calculated third virial coefficients have average percentage deviations within 5% of the experimental values at reduced temperatures between 0.8 and 1.0.     

Transition Metal Complexes with Bidentate Ligands Spanning trans-Positions. VIII. The reactions of the nucleophile trans-[RuCl(NO)(1)] (1 = 2,11-bis(diphenylphosphinomethyl)benzo[c]-phenanthrene) with carbon monoxide and the phosphite ligand (2) (2 = 1-ethyl-3,5,8-trioxa-4-phosphabicyclo (2.2.2)octane)

The preparation of the nucleophile trans-[RuCl(NO)( 1 )], where 1 is the bidentate ligand Ph₂PCH₂C₁₈CH₂PPh₂, and of the five-coordinate species [RuCl(CO)(NO)( 1 )], [RuCl(CO)(NO)(Ph₂PCH₂Ph)₂] and [RuCl(NO)( 2 )( 1 )] are reported. The crystal structure of [RuCl(CO)(NO)( 1 )] shows that the coordination around the metal atom is distorted trigonal bipyramidal with the phosphorus atoms in axial positions. The Ru? N? O bond angle is 142.8°. ¹H- and ³¹P-NMR. and \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \nu $\end{document}_NO IR.-data for the above complexes are reported and related to the coordination geometry.     

Molecular dynamics studies of melting and solid-state transitions of ammonium nitrate

Molecular dynamics simulations are used to calculate the melting point and some aspects of high-temperature solid-state phase transitions of ammonium nitrate (AN). The force field used in the simulations is that developed by Sorescu and Thompson [J. Phys. Chem. A 105, 720 (2001)] to describe the solid-state properties of the low-temperature phase-V AN. Simulations at various temperatures were performed with this force field for a 4 x 4 x 5 supercell of phase-II AN. The melting point of AN was determined from calculations on this supercell with voids introduced in the solid structure to eliminate superheating effects. The melting temperature was determined by calculating the density and the nitrogen-nitrogen radial distribution functions as functions of temperature. The melting point was predicted to be in the range 445 +/- 10 K, in excellent agreement with the experimental value of 442 K. The computed temperature dependences of the density, diffusion, and viscosity coefficient for the liquid are in good agreement with experiment. Structural changes in the perfect crystal at various temperatures were also investigated. The ammonium ions in the phase-II structure are rotationally disordered at 400 K. At higher temperatures, beginning at 530 K, the nitrate ions are essentially rotationally unhindered. The density and radial distribution functions in this temperature range show that the AN solid is superheated. The rotational disorder is qualitatively similar to that observed in the experimental phase-II to phase-I solid-state transition.     

Automorphisms of (B)-geometries

(B)-Geometries are incidence structures arising from permutation sets. The present paper studies the automorphism groups of (B)-Geometries. In certain cases these automorphisms yield examples of inversive planes and of subplanes which are embedded in Minkowski planes (chapter 2). In chapter 3 we describe the automorphism groups of the (B)-Geometries arising from the groups PL(2, pⁿ) and AL(1, pⁿ) in their natural representations on the points of the projective and affine line.Dedicated to Prof.Dr. Walter Benz on his 60th birthdayWork done within the activity of G.N.S.A.G.A. of C.N.R. and supported by the 40% grants of M.U.R.S.T.     

Sensing the ortho Positions in C6Cl6 and C6H4Cl2 from Cl2− Formation upon Molecular Reduction

The geometrical effect of chlorine atom positions in polyatomic molecules after capturing a low-energy electron is shown to be a prevalent mechanism yielding Cl₂⁻. In this work, we investigated hexachlorobenzene reduction in electron transfer experiments to determine the role of chlorine atom positions around the aromatic ring, and compared our results with those using ortho-, meta- and para-dichlorobenzene molecules. This was achieved by combining gas-phase experiments to determine the reaction threshold by means of mass spectrometry together with quantum chemical calculations. We also observed that Cl₂⁻ formation can only occur in 1,2-C₆H₄Cl₂, where the two closest C–Cl bonds are cleaved while the chlorine atoms are brought together within the ring framework due to excess energy dissipation. These results show that a strong coupling between electronic and C–Cl bending motion is responsible for a positional isomeric effect, where molecular recognition is a determining factor in chlorine anion formation.     

Enhancement of the Functional Properties of Mead Aged with Oak (Quercus) Chips at Different Toasting Levels

Consumers increasingly prefer and seek functional beverages, which, given their characteristics, provide important bioactive compounds that help prevent and treat chronic diseases. Mead is a traditional fermented alcoholic beverage made from honey solution. The aging process of mead with oak chips is innovative and bestows functional characteristics to this beverage. Thus, in this study, we sought to develop and characterize a novel functional beverage by combining the health benefits of honey with the traditional aging process of alcoholic beverages in wood. Phenolic compounds, flavonoids, and antioxidant capacity were analyzed in mead using oak chips at different toasting levels and aged for 360 days. LC-ESI-QTOF-MS/MS was used to analyze the chemical profile of different meads. Over time, the aging process with oak chips showed a higher total phenolic and flavonoid content and antioxidant capacity. Eighteen compounds belonging to the classes of organic acids, phenolic acids, flavonoids, and tannins were identified in meads after 360 days. Our findings revealed that the addition of oak chips during aging contributed to p-coumaric, ellagic, abscisic, and chlorogenic acids, and naringenin, vanillin, and tiliroside significantly impacted the functional quality of mead.