On the internally contracted multireference CI method with full contraction

The configuration interaction (CI ) method where the efficiency of the generators of the unitary group is most fully exploited is the internally contracted multireference CI method. In the most recent version of this method the semi-internal configurations were kept uncontracted, which means that the number of configurations can still be quite large. In the present study the necessary formulas are derived for the case where the semi-internal states are also contracted. The highest density matrix that appears in these formulas is of order 5, and the computational treatment of this large matrix is discussed in detail.     

Corrected Debye-Hückel analysis of surface complexation; III. Spherical particle charging including ion condensation

Statistical mechanics has been used to derive a model for the charging of a spherical particle in a salt solution to complement our experimental studies and gain a deeper understanding of the processes involved in surface complexation. Our chosen model goes beyond the equilibrium constants and the Gouy-Chapmann theory currently used in surface complexation models. The proton adsorption is taken to occur at a harmonic potential well on the surface characterized by a frequency v and a well depth u(0). Outside the particle surface there is a capacitor layer of width w(c) which is impenetrable to the salt ions. The diffuse screening of the charged particle is described by a corrected Debye-Hückel analysis accounting for ion size in the ion-ion interactions. To account also for nonlinear electrostatic response a layer of condensed counterions has been introduced. The criterion for the onset of ion condensation is that the electrostatic field exceeds a linear response criterion. Ion size effects are accounted for in terms of hole-corrected electrostatic energies and excluded volume. The model has been applied to titrated surface charge data on goethite (alpha-FeOOH) at various background concentrations and good agreement between the experimental data and the model was obtained. Both the size of the screening ions and the central particle size were shown to be of importance for the surface charge.     

The complete matter sector in a three-generation compactification

We consider a Calabi-Yau compactification paradigm with three light generations and anR-symmetry. From a special form of the Tian-Yau manifold, we also construct a new three-generation model with markedly different phenomenology. Thecomplete spectrum of all light matter fields is obtained in a universal way and moreover in a physically suitable basis, allowing a straightforward analysis of all their couplings. Here we discuss all the renormalizable Yukawa couplings. This computation can equally well be repeated for all compactification models based on Calabi-Yau complete intersections in products of homogeneous spaces.     

UHF-CI studies of energy barriers for the abstraction and exchange reactions in the system H + CH4

UHF and CI calculations, using the direct CI method, and double-zeta plus polarization functions basis sets, have been performed on the more important parts of the energy hypersurface for CH₅. The abstraction H + CH₄ → H₂ + CH₃ and the inversion substitution reaction H′ + CH₄ → CH₃H′ + H have been studied in detail. The predicted barriers for these two reactions are 13.5 and 36.6 kcal/mol, respectively. The abstraction reaction is, in agreement with experiment, found to be almost thermo-neutral with a heat of reaction of 1.5 kcal/mol.     

Electron capture dissociation Fourier transform ion cyclotron resonance mass spectrometry in the electron energy range 0-50 eV

Electron capture dissociation (ECD) of polypeptide cations was obtained with pencil and hollow electron beams for both sidekick and gas-assisted dynamic ion trapping (GADT) using Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) with an electrostatic ion transfer line. Increasing the number of trapped ions by multiple ICR trap loads using GADT improved the ECD sensitivity in comparison with sidekick ion trapping and ECD efficiency in comparison with single ion trap load by GADT. Furthermore, enhanced sensitivity made it possible to observe ECD in a wide range of electron energies (0-50 eV). The degree, rate and fragmentation characteristics of ECD FTICR-MS were investigated as functions of electron energy, electron irradiation time, electron flux and ion trapping parameters for this broad energy range. The results obtained show that the rate of ECD is higher for more energetic (>1 eV) electrons. Long electron irradiation time with energetic electrons reduces average fragment ion mass and decreases efficiency of formation of c- and z-type ions. The obtained dependencies suggest that the average fragment ion mass and the ECD efficiency are functions of the total fluence of the electron beam (electron energy multiplied by irradiation time). The measured electron energy distributions in low-energy ECD and hot ECD regimes are about 1 eV at full width half maximum in employed experimental configurations.     

DNA-binding of semirigid binuclear ruthenium complex delta,delta-[mu-(11,11'-bidppz)(phen)(4)ru(2)](4+): extremely slow intercalation kinetics

We here report a remarkably slow rearrangement of binding modes for a binuclear ruthenium(II) complex upon interaction with DNA. It has been previously shown that Delta,Delta-[mu-(11,11'-bidppz)(phen)4Ru2]4+ binds to DNA in one of the grooves. However, we find that this is only an initial, metastable, binding mode, which is extremely slowly reorganized into an intercalative binding geometry. The slow rearrangement and dissociation, revealed by flow linear dichroism and fluorescence spectroscopy, are concluded to be a result from the complex being threaded through the DNA, with one of the bridging aromatic dppz ligands intercalated between the base pairs of the DNA, placing one metal center in the minor groove and one in the major groove. A negative LD, a high luminescence quantum yield, and long luminescence lifetimes, similar to the intercalating complex Delta-[Ru(phen)2dppz]2+, indicate intercalation of the bidppz moiety. The unique slow dissociation of the complex in its final DNA-binding mode suggests that this class of threading, partially intercalated binuclear complexes may be interesting in the context of cancer therapy. Also, their unique optical and photophysical properties could make such complexes, either alone or scaffolded by DNA structures, of interest for the development of nanometer-sized molecular optoelectronic devices.