Metal phosphonates applied to biotechnologies: a novel approach to oligonucleotide microarrays

A new process for preparing oligonucleotide arrays is described that uses surface grafting chemistry which is fundamentally different from the electrostatic adsorption and organic covalent binding methods normally employed. Solid supports are modified with a mixed organic/inorganic zirconium phosphonate monolayer film providing a stable, well-defined interface. Oligonucleotide probes terminated with phosphate are spotted directly on to the zirconated surface forming a covalent linkage. Specific binding of terminal phosphate groups with minimal binding of the internal phosphate diesters has been demonstrated. The mixed organic/inorganic thin films have also been extended for use arraying DNA duplex probes, and therefore represent a viable general approach to DNA-based bioarrays. Ideas for interfacing mixed organic/inorganic interfaces to other bioapplications are also discussed.     

Ab initio study of the electronic and structural properties of the crystalline polyethyleneimine polymer

Polyethyleneimine is a very interesting polymer, not only for its extensive use in biological applications, but also for its crystal structure as a double-stranded helix in the anhydrous state. In order to elucidate the electronic bulk properties of the crystalline (or linear) polyethyleneimine built from ethylenediamine molecules in anhydrous conditions, we performed ab initio density functional theory calculations on water-free molecular crystal structures. The resulting polymer is a semiconductor with a small band gap: Eg = 0.40 eV.     

Investigating the interaction of crystal violet probe molecules on sodium dodecyl sulfate micelles with hyper-Rayleigh scattering

We report the use of the nonlinear optical technique of hyper-Rayleigh scattering to investigate the interaction of the cationic probe molecule crystal violet with micelles of sodium dodecyl sulfate. An absolute value of (847 +/- 80) x 10(-30) esu is measured at the fundamental wavelength of 870 nm for the molecular hyperpolarizability of crystal violet free in pure aqueous solutions. In aqueous solutions of sodium dodecyl sulfate, above and below the critical micelle concentration, the measured hyperpolarizability of crystal violet is weaker than in the solution free of sodium dodecyl sulfate. From the comparison with linear optical photoabsorption spectroscopy data, this difference is attributed to electrostatic interactions between the cationic crystal violet molecules and the negatively charged sodium dodecyl sulfate surfactant molecules present in excess. Polarization resolved hyper-Rayleigh scattering measurements are then performed to show that, below and above the critical micelle concentration, crystal violet molecules also undergo symmetry changes upon interaction with sodium dodecyl sulfate. Above the critical micelle concentration, the minimum fraction of micelles interacting with at least one CV molecule is estimated. For instance, for a crystal violet aqueous concentration of 150 microM, this fraction is larger than 7%.     

Magic numbers in the mass distribution of the benzene+-argonn ions: evaporation dynamics and cluster structure

The intensity distribution of benzene⁺-Ar_n cluster ions formed by laser ionization of neutral clusters has been investigated: two main intensity anomalies (magic numbers atn=20 and 45) have been observed in the 15–60 size range. The evaporation dynamics of these species in the 2–50 microsecond time window following ionization has been studied using the electrostatic mirror of a reflectron time-of-flight mass spectrometer as a kinetic energy analyser capable to distinguish parent and daughter ions. The magic numbers are interpreted in terms of size dependent evaporation behaviors: beyondn=20, a sudden decrease of the evaporation energy is observed; in then=45–47 size range, the magic number is accounted for by the specific dynamics of then=46 and 47 clusters, in particular the possible loss of two argon atoms forn=47 within the experimental time window. These results and their implications on the cluster structure are discussed in the light of the evaporative ensemble model and compared to the evaporation characteristics of similar species, in particular the neat rare gas clusters.     

General access to iminosugar C-glycoside building blocks by means of cross-metathesis: a gateway to glycoconjugate mimetics

[reaction: see text] Cross-metathesis reactions of alpha-1-C-allyl-1-deoxynojirimycin derivatives 7a,b and various functionalized alkenes mediated by Grubbs's catalyst 3 are reported. The reactions showed reasonable to very good yields and excellent E/Z selectivity. This methodology allows the efficient and convergent synthesis of iminosugar C-glycosides with a great degree of structural diversity in the aglycone, opening the way to a variety of new glycoconjugate mimetics of biological interest.     

Aromatic foldamers as scaffolds for metal second coordination sphere design

As metalloproteins exemplify, the chemical and physical properties of metal centers depend not only on their first but also on their second coordination sphere. Installing arrays of functional groups around the first coordination sphere of synthetic metal complexes is thus highly desirable, but it remains a challenging objective. Here we introduce a novel approach to produce tailored second coordination spheres. We used bioinspired artificial architectures based on aromatic oligoamide foldamers to construct a rigid, modular and well-defined environment around a metal complex. Specifically, aza-aromatic monomers having a tethered [2Fe–2S] cluster have been synthesized and incorporated in conical helical foldamer sequences. Exploiting the modularity and predictability of aromatic oligoamide structures allowed for the straightforward design of a conical architecture able to sequester the metal complex in a confined environment. Even though no direct metal complex–foldamer interactions were purposely designed in this first generation model, crystallography, NMR and IR spectroscopy concurred to show that the aromatic oligoamide backbone alters the structure and fluxional processes of the metal cluster.

Wrapping a [2Fe–2S] metal complex in an aromatic foldamer helix is introduced as a new approach to tailor a second coordination sphere.     

Study of the polymer latex coalescence by dielectric measurements at microwave frequency—feasibility of the method

The measurement of the complex dielectric constant ( ^*=–j) in the dipolar absorption domain of the free water molecule (microwave region) permits us to follow quasi-specifically and precisely the water circulation during the coalescence process of a latex. Weight losses and dielectric constants variations have been simultaneously recorded upon latex drying, in a resonant cavity at 5 and 9 GHz and under controlled atmosphere and temperature. Two different latexes were studied (polybutylacrylate (PBuA) and polystyrene (PS)) from which the glass transition temperature effect was investigated. It is found that the harder the polymer particles, the more clearly evidenced the flocculation and packing points are. This method appears to be quite reliable for discriminating the various steps in the film formation process of latexes.     

Chemoselective and stereoselective synthesis of gem-difluoro-β-aminoesters or gem-difluoro-β-lactams from ethylbromodifluoroacetate and imines during Reformatsky reaction

The chemoselective and stereoselective synthesis of gem-difluoro-β-aminoesters or gem-difluoro-β-lactams was investigated from ethylbromodifluoroacetate and imines during Reformatsky reaction. Influence of various reaction parameters, such as nature of the amine part, nature of the chiral auxiliary, was evaluated. High levels of stereoselectivity (up to 98%) were obtained for gem-difluoro-β-aminoesters and gem-difluoro-β-lactams using either (R)-phenylglycinol or (R)-methoxyphenylglycinol.     

A novel approach to study the inclusion mechanism of imidazole derivatives in micellar chromatography

A chromatographic approach was proposed to describe the existence of surfactant micelles in a surfactant/hydroorganic phosphate buffer mobile phase. Using this mixture as a mobile phase, a novel mathematical theory is presented to describe the inclusion mechanism of imidazole derivatives in surfactant micelles. Using this model, enthalpy, entropy and the Gibbs free energy were determined for two chromatographic chemical processes: (i) the transfer of the imidazole derivative from the mobile phase to the stationary phase; and (ii) the imidazole derivative inclusion in surfactant micelles. These thermodynamic data indicate that the main parameter determining chromatographic retention is distribution of the imidazole derivatives to micelles of surfactant while the interaction with the stationary phase play a minor role.     

Analyse destructive de traces de rubidium dans des echantillons mineralogiques par radioactivation au moyen de neutrons de 14 MeV

Increasing interest is devoted in geochemistry to the determination of minor elements in rocks and minerals with the best analytical precision. The use of different methods is quite useful to point out and overcome the systematic and specific interferences of the geological matrix. 14 MeV neutron activation analysis can be used for such a purpose as an additional check method. A successful attempt has been made in the determination of rubidium in different geochemical standards. A sensitivity of 100 ppm can be reached with a 5% precision without any interference problem.