Experiments on 40 Gb/s Transmission with Wavelength Conversion: Results from the IST ATLAS Project

In this article we report the main experimental results obtained in the framework of the IST ATLAS project regarding the transmission at 40 Gb/s over long terrestrial links, including the frequency conversion of a signal. We report the single-channel 40 Gb/s transmission over a link 500 km long with an amplifier spacing of 100 km, both with G.652 fibers and G.653 fibers by periodically compensating the chromatic dispersion with dispersion-compensating fibers. We report the single-channel transmission at 40 Gb/s, also, after the wavelength conversion of a channel with both PPLN and semiconductor optical amplifier devices. In particular, 500 km distances are obtained with PPLN wavelength conversion and 300 km distances with semiconductor optical amplifiers. Some results have been reported for electronic devices operating at 40 Gb/s.     

A note on the transition probability over C*-algebras

The algebraic structure of Uhlmann's transition probability between mixed states on unital C ^*-algebras (see [2]) is analyzed. Several improvements of methods to calculate the transition probability are fixed examples are given (e.g., the case of quasi-local C ^*-algebras is dealt with) and two more functional characterizations are proved in general (see Theorems 1 and 3).     

Broadband resonant cavity inside a two-dimensional sonic crystal

A rectangular cavity inside a two-dimensional sonic crystal was theoretically and experimentally characterized by examining its response to a cylindrical source emitting narrow-band filtered noise bursts with central frequencies ranging from 2 to 12 kHz. A broadband intensity resonance was observed for frequencies within the full band-gap region of the sonic crystal (5.5–6.5 kHz). Unlike ordinary resonances, this broadband resonance depends on the reflection properties of the sonic crystal forming the surrounding walls rather than on the geometry of the cavity.     

Sorption of Lead(II) on Two Chelating Resins: From the Exchange Coefficient to the Intrinsic Complexation Constant

The sorption of inorganic lead(II) on two cationic resins containing different complexing groups, the iminodiacetic Chelex 100 and the carboxylic Amberlite CG-50, was investigated. The Gibbs-Donnan model was used to describe and predict the sorption through the determination of the intrinsic complexation constants. These quantities, even though non-thermodynamic, characterize the sorption as being independent of experimental conditions. The sorption mechanism for metals on complexing resins was also studied by adding a competitive soluble ligand that shifts the sorption curves to higher pH. The ligand competes with the resin for complexation with the metal ion. Lead(II) is strongly sorbed on Chelex 100 through the formation of two complexes in the resin phase: MHL with log ₁₀ β _111i =−0.3 and ML with log ₁₀ β _111i =−3.7. The presence of the competitive ligand in solution allows for the determination of a third complex. Furthermore, on Amberlite CG-50 the sorption is rather strong and involves the formation of the complex ML, in more acidic solution, with log ₁₀ β _110i =−2.0. In the presence of the ligand PyDA, the ML(OH) complex was characterized by log ₁₀ β _11−1i =−5.6. In all the experiments the hydrolysis reactions in the aqueous phase are considered quantitatively.     

Energy-based prediction of amino acid-nucleotide base recognition

Despite decades of investigations, it is not yet clear whether there are rules dictating the specificity of the interaction between amino acids and nucleotide bases. This issue was addressed by determining, in a dataset consisting of 100 high-resolution protein-DNA structures, the frequency and energy of interaction between each amino acid and base, and the energetics of water-mediated interactions. The analysis was carried out using HINT, a non-Newtonian force field encoding both enthalpic and entropic contributions, and Rank, a geometry-based tool for evaluating hydrogen bond interactions. A frequency- and energy-based preferential interaction of Arg and Lys with G, Asp and Glu with C, and Asn and Gln with A was found. Not only favorable, but also unfavorable contacts were found to be conserved. Water-mediated interactions strongly increase the probability of Thr-A, Lys-A, and Lys-C contacts. The frequency, interaction energy, and water enhancement factors associated with each amino acid-base pair were used to predict the base triplet recognized by the helix motif in 45 zinc fingers, which represents an ideal case study for the analysis of one-to-one amino acid-base pair contacts. The model correctly predicted 70.4% of 135 amino acid-base pairs, and, by weighting the energetic relevance of each amino acid-base pair to the overall recognition energy, it yielded a prediction rate of 89.7%.     

Structural and thermodiffractometric analysis of coordination polymers. Part II: zinc and cadmium derivatives of the Bim ligand [Bim = bis(1-imidazolyl)methane

New polynuclear coordination species containing the ditopic bis(1-imidazolyl)methane (Bim) ligand have been prepared as microcrystalline powders and structurally characterized by ab initio X-ray powder diffraction methods. [Zn(CH3COO)2(Bim)]n contains 1D chains with tetrahedral metal atoms bridged by Bim ligands; [CdBr2(Bim)]n shows a dense packing with hexacoordinated Cd(II) ions and mu-Br and mu-Bim bridges; at variance, the isomorphous [ZnCl2(Bim)]n and [ZnBr2(Bim)]n species contain cyclic dimers based on tetrahedral Zn(II) ions. Thermodiffractometric analysis allowed estimation of the linear thermal expansion coefficients and strain tensors derived there from. Bim-rich phases, with 2:1 ligand-to-metal ratio, were also isolated: ZnBr2(Bim)2(H2O)3 and [Cd(CH3COO)2(Bim)2]n containing cis and trans MN4O2 chromophores, respectively, show 1D polymers built upon M2Bim2 cycles, hinged on the metal ions. In all species the conformation of the Bim ligands is Cs (or nearly so), while in the few sparse reports of similar coordination polymers the alternative C2 one was preferentially observed.     

Towards Enhanced MRI Performance of Tumor-Specific Dimeric Phenylboronic Contrast Agents

It is known that phenylboronic acid (PBA) can target tumor tissues by binding to sialic acid, a substrate overexpressed by cancer cells. This capability has previously been explored in the design of targeting diagnostic probes such as Gd- and ⁶⁸Ga-DOTA-EN-PBA, two contrast agents for magnetic resonance imaging (MRI) and positron emission tomography (PET), respectively, whose potential has already been demonstrated through in vivo experiments. In addition to its high resolution, the intrinsic low sensitivity of MRI stimulates the search for more effective contrast agents, which, in the case of small-molecular probes, basically narrows down to either increased tumbling time of the entire molecule or elevated local concentration of the paramagnetic ions, both strategies resulting in enhanced relaxivity, and consequently, a higher MRI contrast. The latter strategy can be achieved by the design of multimeric Gd^III complexes. Based on the monomeric PBA-containing probes described recently, herein, we report the synthesis and characterization of the dimeric analogues (Gd^III-DOTA-EN)₂-PBA and (Gd^III-DOTA-EN)₂F₂PBA. The presence of two Gd ions in one molecule clearly contributes to the improved biological performance, as demonstrated by the relaxometric study and cell-binding investigations.     

HistoFlex--a microfluidic device providing uniform flow conditions enabling highly sensitive, reproducible and quantitative in situ hybridizations

A microfluidic device (the HistoFlex) designed to perform and monitor molecular biological assays under dynamic flow conditions on microscope slide-substrates, with special emphasis on analyzing histological tissue sections, is presented. Microscope slides were reversibly sealed onto a cast polydimethylsiloxane (PDMS) insert, patterned with distribution channels and reaction chambers. Topology optimization was used to design reaction chambers with uniform flow conditions. The HistoFlex provided uniform hybridization conditions, across the reaction chamber, as determined by hybridization to microscope slides of spotted DNA microarrays when applying probe concentrations generally used in in situ hybridization (ISH) assays. The HistoFlex's novel ability in online monitoring of an in situ hybridization assay was demonstrated using direct fluorescent detection of hybridization to 18S rRNA. Tissue sections were not visually damaged during assaying, which enabled adapting a complete ISH assay for detection of microRNAs (miRNA). The effects of flow based incubations on hybridization, antibody incubation and Tyramide Signal Amplification (TSA) steps were investigated upon adapting the ISH assay for performing in the HistoFlex. The hybridization step was significantly enhanced using flow based incubations due to improved hybridization efficiency. The HistoFlex device enabled a fast miRNA ISH assay (3 hours) which provided higher hybridization signal intensity compared to using conventional techniques (5 h 40 min). We further demonstrate that the improved hybridization efficiency using the HistoFlex permits more complex assays e.g. those comprising sequential hybridization and detection of two miRNAs to be performed with significantly increased sensitivity. The HistoFlex provides a new histological analysis platform that will allow multiple and sequential assays to be performed under their individual optimum assay conditions. Images can subsequently be recorded either in combination or sequentially through the ability of the HistoFlex to monitor assays without disassembly.     

Use of cine phase-contrast MRI in the assessment of distal splenorenal shunt function

Magnetic resonance imaging (MRI) features of a surgical splenorenal shunt in a 28-year-old girl are described. The woman underwent color doppler ultrasonography during follow up for the shunt, which was inconclusive. MR was used to investigate the function of the shunt. Velocity and flow direction in splanchnic vessels and in the shunt were evaluated using cine fast phase-contrast sequences. MR findings could be of help in the evaluation of patients undergoing surgical shunts during follow up.