Structural insight into the inactivation of <Emphasis Type="Italic">Mycobacterium tuberculosis</Emphasis> non-classical transpeptidase Ldt<Subscript>Mt2</Subscript> by biapenem and tebipenem

Background

The carbapenem subclass of β-lactams is among the most potent antibiotics available today. Emerging evidence shows that, unlike other subclasses of β-lactams, carbapenems bind to and inhibit non-classical transpeptidases (L,D-transpeptidases) that generate 3 → 3 linkages in bacterial peptidoglycan. The carbapenems biapenem and tebipenem exhibit therapeutically valuable potencies against Mycobacterium tuberculosis (Mtb).

Results

Here, we report the X-ray crystal structures of Mtb L,D-transpeptidase-2 (Ldt_Mt2) complexed with biapenem or tebipenem. Despite significant variations in carbapenem sulfur side chains, biapenem and tebipenem ultimately form an identical adduct that docks to the outer cavity of Ldt_Mt2. We propose that this common adduct is an enzyme catalyzed decomposition of the carbapenem adduct by a mechanism similar to S-conjugate elimination by β-lyases.

Conclusion

The results presented here demonstrate biapenem and tebipenem bind to the outer cavity of Ldt_Mt2, covalently inactivate the enzyme, and subsequently degrade via an S-conjugate elimination mechanism. We discuss structure based drug design based on the findings and propose that the S-conjugate elimination can be leveraged to design novel agents to deliver and locally release antimicrobial factors to act synergistically with the carbapenem carrier.

     

One-pot synthesis of 3-arylaminomaleimides from terminal alkynes and isocyanates

The reaction of aryl acetylide anions with phenyl isocyanate and subsequent addition of a protonating agent such as ethanol affords good yields of 3-aminomaleimides, formed by the cyclization of one molecule of alkyne with two isocyanates. When the reaction is quenched with water instead, cyclopentadienone imines are formed as the major products.     

The synthesis and structure of bis(acetonitrile)nitrosyl tris(3,5-dimethylpyrazolyl)borato molybdenum hexafluorophosphate

Summary Treatment of [Mo{HB(3,5-Me₂C₃HN₂)₃}(NO)I₂] with one or two moles of AgPF₆ in acetonitrile afforded the paramagnetic (one unpaired electron) complex [Mo{HB(3,5-Me₂C₃NH₂)₃}(NO)(NCMe)₂][PF₆]. The structure of this complex was determined crystallographically, and the six-coordinate geometry of the complex cation confirmed.     

CAROTENOID TRIPLET STATES IN PHOTOSYNTHETIC BACTERIA

Abstract— The triplet state spectra of anaerobically grown cells of Rhodopseudomonas sphaeroides GIC and R. sphaeroides wild type and aerobically grown cells of R. sphaeroides wild type were examined under reducing and non-reducing conditions at 100 K. by electron paramagnetic resonance (EPR). Large differences in the zero field splitting parameters, |D| and |E| of the triplets are seen to arise in the different preparations. The spectra are assigned to the triplet states of carotenoids, some of which are closely associated with the reaction center and others are contained in the light harvesting complex. Taken together with the triplet state data on Rhodospirillum rubrum wild type previously published the trends in the zero field splitting parameters can be understood in terms of the extent of electron derealization in carotenoids of varying length.     

Phase relationships in the system SrBr2SrCl2

Strontium bromide-chloride phases (SrBr_xCl_2?x) in the composition region 2.00 > x > 0 were prepared and examined by the Guinier powder X-ray diffraction technique. Observed and calculated powder intensities for the compositions x = 1.60, 1.40, and 0.30 are presented. The anions assume an ordered arrangement at the first two compositions and a random arrangement at the third. Two previously unreported intermediate phases at the composition about x = 1.50 and x = 0.60, both of unknown structure, were identified and their d values are reported. SrBr₂ is found to be insoluble in SrCl₂.     

The NMR spectra of porphyrins—19: 13C and proton NMR spectra of metal-free porphyrins with the Type-IX substituent orientation,and of their zinc(II) complexes

The ¹³C and proton NMR spectra of six porphyrins bearing the substituent orientation characteristic of the natural “Type-IX” arrangement are reported and assigned. Significant concentration effects in the spectra of the free base porphyrins, together with the broadening of the C_α (and occasionally C_β) carbon resonances due to NH tautomerism caused a significant loss of data in these spectra. However, the spectra of the corresponding zinc(II) porphyrins (with addition of excess pyrrolidine) show that both these extraneous effects are completely removed to give well-resolved spectra with accurately reproducible chemical shifts. These spectra are assigned and an analysis of the chemical shifts allows the deduction of substituent chemical shift (SCS) parameters for the peripheral substituents at the beta and meso carbons. There is no global effect of these beta substituents, the beta carbon SCS being confined to the immediate pyrrole ring, and the meso carbon SCS to the two adjacent pyrrole rings. The SCS parameters are analyzed and it is shown how they can be used to predict the peripheral and meso carbon chemical shifts of any porphyrin bearing the substituents discussed.     

Interpenetrating polymer networks of poly(carbonate-urethane) and polyvinyl pyridine

Simultaneous interpenetrating polymer networks (IPN's), pseudo IPN's, and liner blends of aliphatic poly(carbonate-urethane) (PCU) and polyvinyl pyridine (PVP) have been prepared and characterized by DSC, DMA, and TEM. The full IPN's of PCU and PVP had a single phase morphology only above 50 wt % PCU, as determined by both DSC and DMA and confirmed by transmission electron microscopy (TEM). However, in both pseudo IPN's of PCU and PVP and in their linear blends there exist multiple glass transitions and melting points seen by DSC and DMA indicating phase incompatibility. The full IPN's exhibited superior ultimate mechanical properties and solvent resistance as compared to the pseudo IPN's, liner blends, and the pure crosslinked PCU and PVP networks.     

Vendor managed inventory contracts – coordinating the supply chain while looking from the vendor’s perspective

The paper studies coordination of a supply chain when the inventory is managed by the vendor (VMI). We also provide a general mathematical framework that can be used to analyze contracts under both retailer managed inventory (RMI) and VMI. Using a simple newsvendor scenario with a single vendor and single retailer, we study five popular coordinating supply chain contracts: buyback, quantity flexibility, quantity discount, sales rebate, and revenue sharing contracts. We analyze the ability of these contracts to coordinate the supply chain under VMI when the vendor freely decides the quantity. We find that even though all of them coordinate under RMI, quantity flexibility and sales rebate contracts do not generally coordinate under VMI. Furthermore, buyback and revenue sharing contracts are equivalent. Hence, we propose two new contracts which coordinate under VMI (one of which coordinates under RMI too, provided a well-known assumption holds). Finally, we extend our analysis to consider multiple independent retailers with the vendor incurring linear or convex production cost, and show that our results are qualitatively unchanged.