Molecular dynamics simulations and free energy calculations on the enzyme 4‐hydroxyphenylpyruvate dioxygenase

4‐Hydroxyphenylpyruvate dioxygenase is a relevant target in both pharmaceutical and agricultural research. We report on molecular dynamics simulations and free energy calculations on this enzyme, in complex with 12 inhibitors for which experimental affinities were determined. We applied the thermodynamic integration approach and the more efficient one‐step perturbation. Even though simulations seem well converged and both methods show excellent agreement between them, the correlation with the experimental values remains poor. We investigate the effect of slight modifications on the charge distribution of these highly conjugated systems and find that accurate models can be obtained when using improved force field parameters. This study gives insight into the applicability of free energy methods and current limitations in force field parameterization. © 2011 Wiley Periodicals, Inc. J Comput Chem 2011     

A straightforward method for analysing the grain-size distribution in tungsten carbide - cobalt hardmetals

Measurement of the grain-size distribution of sintered hardmetals is indispensable in research and production. In this study we present a method consisting of etching hardmetals in order to remove the cobalt binder and to analyse the remaining tungsten-cobalt (WC) crystallites on the basis of scanning electron microscopy images subjected to a PC-based image analysis by use of MATLAB®. Sample preparation is easy and quick to perform, i.e. it does not require metallographic polishing. It consists of either deep etching of the cobalt binder of cut and optionally hand-ground surfaces or etching of fracture surfaces. Two different computational routines and one combination thereof are described. Two hardmetal grades with average WC grain sizes slightly larger as well as smaller than 200 nm were investigated. The results of the computer algorithms are compared to data obtained by manual linear intercept analysis. The analysis has good potential to avoid time-consuming metallographic preparation and pre-treatment for grain-size analysis, which is especially true for hardmetals with extremely fine grain size.     

Protein analysis of laser capture micro-dissected tissues revealed cell-type specific biological functions in developing barley grains

Both the nucellar projection (NP) and endosperm transfer cells (ETC) of the developing barley grain (harvested 8 days after flowering) were isolated by laser capture micro-dissection combined with pressure catapulting. Protein extracts were analyzed by nanoUPLC separation combined with ESI-Q-TOF mass spectrometry. The majority of the ～160 proteins identified were involved in translation, protein synthesis, or protein destination. The NP proteome was enriched for stress defense molecules, while proteins involved in assimilate transport and the mobilization of nutrients were common to both the NP and the ETC. The combined qualitative and quantitative protein profiling allowed for the identification of several proteins showing tissue specificity in their expression, which underlines the distinct biological functions of these two tissues within the developing barley grain.     

Assessing Elementary Understanding of Multiplication Concepts

This article summarizes the basic concepts of multiplication and provides some evidence that the traditional third‐grade curriculum and instruction emphasizing memorization of multiplication facts produces much less understanding of the basic concepts of multiplication than a standards‐based curriculum and instruction emphasizing construction of number sense and meaning for operations. This study also describes a collection of assessment tasks that provided meaningful evidence of children's understandings of basic multiplication concepts, including understandings of the relationships between multiplication and addition.     

Ultrahigh-molecular-weight polyethylene: Raman spectroscopic study of melt anisotropy

The Raman spectrum of ultrahigh-molecular-weight polyethylene (UHMWPE) has been obtained in the temperature interval 135–208°C, a region where optical anisotropy was observed to exist. On the basis of our spectroscopic evidence, we believe that ordered regions persist in the melt above the calorimetrically determined melting point, and that part of the polyethylene chain is in an enviroment which is similar to that of the orthorhombic crystal. These ordered domains disappear with increasing temperature, but no calorimetric phase transition is associated with this change. We postulate that the very long relaxation times associated with the highly viscous melt keep the polyethylene chains in ordered environments which persist until decreased viscosity at increased temperature allows long-range segmental motion. Our evidence supports the view that the melt anisotropy of UHMWPE arises from oriented slowly melting superheated crystals and not from a smectic liquid-crystalline phase.     

Acoustic cues to lexical segmentation: a study of resynthesized speech

It has been posited that the role of prosody in lexical segmentation is elevated when the speech signal is degraded or unreliable. Using predictions from Cutler and Norris' [J. Exp. Psychol. Hum. Percept. Perform. 14, 113-121 (1988)] metrical segmentation strategy hypothesis as a framework, this investigation examined how individual suprasegmental and segmental cues to syllabic stress contribute differentially to the recognition of strong and weak syllables for the purpose of lexical segmentation. Syllabic contrastivity was reduced in resynthesized phrases by systematically (i) flattening the fundamental frequency (F0) contours, (ii) equalizing vowel durations, (iii) weakening strong vowels, (iv) combining the two suprasegmental cues, i.e., F0 and duration, and (v) combining the manipulation of all cues. Results indicated that, despite similar decrements in overall intelligibility, F0 flattening and the weakening of strong vowels had a greater impact on lexical segmentation than did equalizing vowel duration. Both combined-cue conditions resulted in greater decrements in intelligibility, but with no additional negative impact on lexical segmentation. The results support the notion of F0 variation and vowel quality as primary conduits for stress-based segmentation and suggest that the effectiveness of stress-based segmentation with degraded speech must be investigated relative to the suprasegmental and segmental impoverishments occasioned by each particular degradation.     

Hybrid fluorescent nanoparticles from quantum dots coupled to cellulose nanocrystals

Carboxylated cellulose nanocrystals (CNCs) were decorated with CdSe/ZnS quantum dots (QDs) using a carbodiimide chemistry coupling approach. The one-step covalent modification was supported by nanoscale imaging, which showed QDs clustered on and around the CNCs after coupling. The QD–CNC hybrid nanoparticles remained colloidally stable in aqueous suspension and were fluorescent, exhibiting the broad excitation and narrow emission profile characteristic of the QDs. QD–CNCs in nanocomposite films imparted strong fluorescence within CNC-compatible matrices at relatively low loadings (0.15 nmol QDs/g of dry film), without altering the overall physical properties or self-assembly of the CNCs. The hybrid QD–CNCs may find applications in nanoparticle tracking, bio-imaging, optical/sensing devices, and anti-counterfeit technologies.