Molecular Modeling and 3D-QSAR Studies in 2-Aziridinyl-and 2,3-Bis(Aziridinyl)-1,4-Naphthoquinonyl Sulfonate and Acylate Derivatives as Potential Antimalarial Agents

Abstract

Malaria is still continuing to be one of the most dreadful diseases of the tropical countries particularly due to the development of resistance to the existing antimalarials. From observed, antimalarial activity of 2-aziridinyl- and 2,3-bis(aziridinyl)-1,4-naphthoquinonyl sulfonate and acylate derivatives acting through redox cycling mechanism, molecular modeling and three dimensional-quantitative structure activity relationship (3D-QSAR) studies have been carried out on a set of 63 compounds to identify important pharmacophors. Among several 3D-QSAR models generated, three models with correlation coefficient r > 0.82, match > 0.60 and chance = 0.00 have shown two common biophoric sites: one being the oxygen atom at position 1 of the naphthoquinone ring in terms of π-population, charge and electron donating ability while the second being the center of the phenyl ring in terms of its 6π-electrons. In addition to these sites, the models also share two common secondary sites: one positively contributing H-acceptor site while the second site contributing negatively in terms of steric refractivity. All these models showed good agreement between the experimental, calculated and predicted antimalarial activities.     

Synthesis of Some Novel bis‐Spiro[indole‐pyrazolinyl‐thiazolidine]‐2,4′‐diones

The reaction of 1H‐indol‐2,3‐diones with 1,6‐dibromohexane has resulted in the formation of new 1H‐indol‐2,3‐diones‐1,1′‐(1,6‐hexanediyl)bis in quantitative yields. These compounds have been used for the synthesis of novel [3′‐(2,3‐dimethyl‐5‐oxo‐1‐phenyl‐3‐pyrazolin‐4‐yl)spiro[3H‐indol‐3,2′‐thiazolidine]‐2,4′‐dione]‐1,1′‐(1,6‐hexanediyl)bis via bis Schiff's bases, [3‐(2,3‐dimethyl‐5‐oxo‐1‐phenyl‐3‐pyrazolin‐4‐yl) imino‐1H‐indol‐2‐one]‐1,1′‐(1,6‐hexanediyl)bis.     

Determination of calcium and iron in silicon and uranium silicide using ion chromatography

Two separate ion chromatography methods were developed for the determination of calcium and iron in silicon and uranium silicide. A cation exchange separation with conductivity detection was developed for Ca. A reversed phase column modified with 50 mM camphor-10-sulphonic acid was used for separating Fe. Iron was detected photometrically. Linear calibrations for Ca (0.1–10 ppm) and Fe (0.5–25 ppm) were performed. Limits of detections for Ca and Fe are 0.03 and 0.2 ppm, respectively. The precision of the methods are better than 2 % for Ca at 0.2 ppm and Fe at 2 ppm.     

Cellulose-synthesizing machinery in bacteria

Cellulose - Cellulose is produced by all plants and a number of other organisms, including bacteria. The most representative cellulose-producing bacterial species is Gluconacetobacter xylinus, an...     

Structural Changes Induced by Quinones: High-Resolution Microwave Study of 1,4-Naphthoquinone

1,4-Naphthoquinone (1,4-NQ) is an important product of naphthalene oxidation, and it appears as a motif in many biologically active compounds. We have investigated the structure of 1,4-NQ using chirped-pulse Fourier transform microwave spectroscopy and quantum chemistry calculations. The rotational spectra of the parent species, and its ¹³C and ¹⁸O isotopologues were observed in natural abundance, and their spectroscopic parameters were obtained. This allowed the determination of the substitution r_s, mass-weighted r_m and semi-experimental r_e^SE structures of 1,4-NQ. The obtained structural parameters show that the quinone moiety mainly changes the structure of the benzene ring where it is inserted, modifying the C−C bonds to having predominantly single or double bond character. Furthermore, the molecular electrostatic surface potential reveals that the quinone ring becomes electron deficient while the benzene ring remains a nucleophile. The most electrophilic areas are the hydrogens attached to the double bond in the quinone ring. Knowledge of the nucleophilic and electrophilic areas in 1,4-NQ will help understanding its behaviour interacting with other molecules and guide modifications to tune its properties.     

Spontaneous translation of nanodroplet over a heterogeneous surface due to thermal cycles: role of solid–liquid interfacial fluctuations

ABSTRACT

We study the molecular-scale features of the solid surface that result in the spontaneous motion of a nanodroplet due to the periodic variation of temperature. We first employ a thermodynamic model to predict the variation of solid–fluid interfacial properties that can result in the above motion. The model identifies a composite (surface couple) made of two surfaces that are characterised by a large difference between the entropic parts of the solid–liquid interfacial free energies. In order to understand the molecular-scale features of the two surfaces that may form a surface couple, we performed grand canonical Monte Carlo simulations of Lennard Jones fluid and crystalline surfaces made of Lennard Jones-like atoms. We then used the cumulant expansions of the perturbation formulas to divide the interfacial entropy into two parts: The one that is directly affected by the solid–fluid attraction (direct part), and the other (indirect part) that is indirectly affected by the solid–fluid attraction via the alteration of interfacial fluctuations. Our results indicate that two surfaces form a surface couple if the differences between their chemical natures lead to large differences in the indirect part of the interfacial entropy, while the direct part remains relatively unaffected.     

Spin Dynamics and Dirac Nodes in a Kagome Lattice

Herein, the spin dynamics for various magnetic configurations arranged on a Kagome lattice is investigated. Using a Holstein–Primakoff expansion of the isotropic Heisenberg Hamiltonian with multiple exchange parameters, the development and evolution of magnetic Dirac nodes with both anisotropy and magnetic field are examined. From the classical energies, the phase diagrams for the ferromagnetic (FM), antiferrimagnetic (AfM), and the 120°  phases are shown as functions of J₁, J₂, J₃, and anisotropy. Furthermore, the production of bosonic Dirac and Weyl nodes in the spin-wave spectra is shown. Through frustration of the magnetic geometry, a connection to the asymmetric properties of the Kagome lattice and the various antiferromagnetic configurations is discerned. Most interesting is the 120°  phase, which does not have Dirac nodes when considering only J₁ due to the formation of an analogous antiferromagnetic honeycomb lattice, but gains Dirac symmetry with next-nearest neighbor interactions. Additionally, the presence of flat modes that are characteristic of cluster excitations is shown. Further study of external frustrations from a magnetic field and anisotropy reveals a tunability of the exchange interactions and nodal points.     

Statistical Optimization for Succinic Acid Production from E. Coli in a Cost-Effective Medium

Response surface methodology (RSM) was employed for optimization of medium components and cultural parameters in cost effective cane molasses based medium for attaining high yield of succinic acid. The important factors obtained by “one-variable-at-a-time-approach” (cane molasses, corn steep liquor, sodium carbonate, and inoculum density) were further optimized by RSM. The optimum values of the parameters obtained through RSM (cane molasses 12.5%, corn steep liquor 7.5%, and sodium carbonate 25 mM) led to almost double yield of succinic acid (15.2 g/l in 36 h) as against “one-variable-at-a-time-approach” (7.1 g/l in 36 h) in 500-ml anaerobic bottles containing 300-ml cane molasses based medium. Subsequently, in 10-l bioreactor succinic acid production from Escherichia coli was further improved to 26.2 g/l in 30 h under conditions optimized through RSM. This fermentation-derived succinic acid will definitely help in replacing existing environmentally hazardous and cost-intensive chemical methods for the production of succinic acid.     

Citrate - Nitrate route for the synthesis and characterization of TAG using sol-gel techniques

Terbium Aluminum Garnet (TAG) is an important optically active material and is one of the best materials known for the fabrication of optical isolators. TAG has a large Verdet constant and has good transmission in the region of 350–1500 nm of the electromagnetic spectrum. It is also known that TAG melts incongruently at 1840°C. This makes efficient synthesis of TAG important and challenging and forms the motivation of the present work to develop techniques for the synthesis of TAG at lower temperatures. In the present work we report the synthesis of TAG using sol-gel techniques following the citrate-nitrate route. The prepared sample is sintered at various temperatures in presence of air and characterized using X-ray diffraction, FT-IR spectroscopy, energy dispersive X-ray Analysis and the morphology is observed using the scanning electron microscopy.