Fluorescence Correlation Spectroscopy (FCS): A Promising Tool for Biological Research

Abstract

Fluorescence correlation spectroscopy (FCS) is an important biophysical technique. FCS is currently being used in many areas of biology to solve several scientific problems. Its properties such as detection at the single molecular level, higher sensitivity, and use of lower sample volume make FCS a promising molecular diagnostic tool. The promising applications of FCS extend from DNA kinetics/dynamics studies to the comprehensive understanding of receptor–ligand interactions. In this article, we review various promising biological applications of FCS.     

High‐pressure effects on the Diels–Alder reaction in room temperature ionic liquids

The effect of pressure on the Diels–Alder reaction was examined in room temperature ionic liquids, followed by high‐pressure FT‐IR spectroscopy using pressures up to 150 MPa. Pressure enhances the kinetic sensitivity of the reaction. The kinetic effect of fluorophobic interactions was examined using ionic liquids with fluorous cations. Ionic liquids in combination with ZnI₂ as a Lewis acid catalyst were also studied under high pressure. Copyright © 2007 John Wiley & Sons, Ltd.     

Modulation of the distance dependence of paramagnetic relaxation enhancements by CSA × DSA cross-correlation

Paramagnetic metal ions with fast-relaxing electronic spin and anisotropic susceptibility tensor provide a rich source of structural information that can be derived from pseudo-contact shifts, residual dipolar couplings, dipole-dipole Curie spin cross-correlation, and paramagnetic relaxation enhancements. The present study draws attention to a cross-correlation effect between nuclear relaxation due to anisotropic chemical shielding (CSA) and due to the anisotropic dipolar shielding (DSA) caused by the electronic Curie spin. This CSA x DSA cross-correlation contribution seems to have been overlooked in previous interpretations of paramagnetic relaxation enhancements. It is shown to be sufficiently large to compromise the 1/r6 distance dependence usually assumed. The effect cannot experimentally be separated from auto-correlated DSA relaxation. It can increase or decrease the observed paramagnetic relaxation enhancement. Under certain conditions, the effect can dominate the entire paramagnetic relaxation, resulting in nuclear resonances narrower than in the absence of the paramagnetic center. CSAxDSA cross-correlation becomes important when paramagnetic relaxation is predominantly due to the Curie rather than the Solomon mechanism. Therefore the effect is most pronounced for relaxation by metal ions with large magnetic susceptibility and fast-relaxing electron spin. It most strongly affects paramagnetic enhancements of transverse relaxation in macromolecules and of longitudinal relaxation in small molecules.     

Spectral bundles and the DRY-Conjecture

Supersymmetric heterotic string models, built from a Calabi-Yau threefold X endowed with a stable vector bundle V, usually start from a phenomenologically motivated choice of a bundle V_v in the visible sector, the spectral cover construction on an elliptically fibered X being a prominent example. The ensuing anomaly mismatch between c₂(V_v) and c₂(X), or rather the corresponding differential forms, is often ‘solved’, on the cohomological level, by including a fivebrane. This leads to the question whether the difference can be alternatively realized by a further stable bundle. The ‘DRY’-conjecture of Douglas, Reinbacher and Yau in math.AG/0604597 gives a sufficient condition on cohomology classes on X to be realized as the Chern classes of a stable sheaf. In 1010.1644 [hep-th], we showed that infinitely many classes on X exist for which the conjecture is true. In this note, we give the sufficient condition for the mentioned fivebrane classes to be realized by a further stable bundle in the hidden sector. Using a result obtained in 1011.6246 [hep-th], we show that corresponding bundles exist, thereby confirming this version of the DRY-Conjecture.     

Intrazelluläre Lokalisierung und Funktion von NADPH-Cytochromc-Reduktase in Saccharomyces cerevisiae

Zusammenfassung Das Flavoprotein NADPH-Cytochromc-Reduktase aus Hefe ist im Gegensatz zu bisherigen Anschauungen kein Enzym der mitochondralen Atmungskette, sondern an bisher unbekannte subzelluläre Partikel gebunden, die nach Homogenisieren der Hefezellen von den Mitochondrien abgetrennt werden können. Die Beteiligung von Cytochromb ₂ oder einer Transhydrogenase-reaktion an der Elektronenübertragung von NADPH auf Cytochromc in einem Hefehomogenat konnte ausgeschlossen werden. Die Natur der neuen Hefepartikel sowie die physiologische Funktion des Enzyms NADPH-Cytochromc-Reduktase werden diskutiert.Abkürzungen NADPH reduziertes Nikotinamid-adenin-dinukleotidphosphat - NADH reduziertes Nikotinamid-adenin-dinukleotid - Tris Tris-(hydroxymethyl)aminomethan - BAL 1,2-Dimercapto-3-hydroxypropan - RNase Ribonuklease - ATPase Adenosintriphosphatase - EDTA Äthylendiamintetraessigsäure Mit 2 Abbildungen     

An α/β-HSQC-α/β Experiment for Spin-State Selective Editing of IS Cross Peaks

A generalized version of the TROSY experiment allows the spin-state selective editing of the four multiplet components of¹⁵N–¹H cross peaks of amide groups in proteins into four different subspectra, with no penalty in sensitivity. An improvement by in sensitivity results, if only two of the four multiplet components are selected. Use of the experiment for the measurement of¹J_HNcoupling constants is discussed. A water flip-back version of the experiment is demonstrated with a 45 kDa fragment of¹⁵N/²H labeledStaphylococcus aureusgyrase B.     

Structure determination of protein-ligand complexes by transferred paramagnetic shifts

Rational drug design depends on the knowledge of the three-dimensional (3D) structure of complexes between proteins and lead compounds of low molecular weight. A novel nuclear magnetic resonance (NMR) spectroscopy strategy based on the paramagnetic effects from lanthanide ions allows the rapid determination of the 3D structure of a small ligand molecule bound to its protein target in solution and, simultaneously, its location and orientation with respect to the protein. The method relies on the presence of a lanthanide ion in the protein target and on fast exchange between bound and free ligand. The binding affinity of the ligand and the paramagnetic effects experienced in the bound state are derived from concentration-dependent (1)H and (13)C spectra of the ligand at natural isotopic abundance. Combined with prior knowledge of the crystal or solution structure of the protein and of the magnetic susceptibility tensor of the lanthanide ion, the paramagnetic data define the location and orientation of the bound ligand molecule with respect to the protein from simple 1D NMR spectra. The method was verified with the ternary 30 kDa complex between the lanthanide-labeled N-terminal domain of the epsilon exonuclease subunit from the Escherichia coli DNA polymerase III, the subunit theta, and thymidine. The binding mode of thymidine was found to be very similar to that of thymidine monophosphate present in the crystal structure.     

Photoreactivity of psoralen derivatives in micelles: the roles of hydrophobicity and heavy atom substitution

Intersystem crossing quantum yields of two psoralen derivatives, bromopsoralen (BrMOP) and hexylpsoralen (8-HOP) were measured in ethanol and water by means of laser flash photolysis. Compared to 8-methoxypsoralen (8-MOP), the triplet quantum yields of BrMOP and 8-HOP in ethanol are increased by a factor of 5 and 30, respectively, while BrMOP in aqueous solution shows a twofold enhancement with respect to 8-MOP. Radical cations and hydrated electrons were generated by photoionization in micellar solution upon excitation at 266nm. A nonlinear relationship between transient yield and photon fluence was obtained for each compound, indicating that a two-photon mechanism is predominant in the photoionization of the sensitizers. The photoionization efficiencies are significantly higher in anionic sodium dodecyl sulfate (SDS) than in cationic cetyltrimethylammonium bromide (CTAB) micelles, reflecting the influence of micelle charge on the efficiency of the separation of the photoproduced charge carriers. The photoionization efficiencies of 8-HOP and 8-MOP are similar. It is concluded that the intersystem crossing properties of BrMOP show a substantial heavy atom effect, whereas the effects of hydrophobic substitution on photoionization efficiency are minor.     

Tetraepoxy[32]annulene(4.4.4.4) und `Tetraoxa[30]porphyrin(4.4.4.4)'‐Dikationen

Tetraepoxy[32]annulenes(4.4.4.4) and `Tetraoxa[30]porphyrin(4.4.4.4)' Dications Of the tetraepoxy[32]annulenes as well as the `tetraoxa[30]porphyrin' dications, hithertoo only the (8.0.8.0) and the (6.2.6.2) systems are known to exist in several geometric isomers and to possess antiaromatic and aromatic character, respectively. Here we describe the still missing symmetric member of the [32]annulenes, the tetraepoxy[32]annulene(4.4.4.4) 1 and the corresponding `tetraoxa[30]porphyrin(4.4.4.4)' dication 2 . The cyclizing Wittig reaction of the dialdehyde 3 with the bis‐phosphonium salt 7 at 70° yields the configurational isomers 1a (ZE,EE,EZ,EE), 1b (ZE,EE,EE,EE), and 1c (EZ,EE,EZ,EE). All isomers are antiaromatic; in 1a and 1c , the two (E,E)‐buta‐1,3‐diene‐1,4‐diyl bridges rotate around the adjacent σ‐bonds; the rigidity of 1b with 3 (E,E) bridges prevents any dynamic character. The Wittig reaction of 3 with 7 at 20° only yields the kinetically controlled annulene 1c , and at 120°, an excess of the thermodynamically most stable isomer 1a is formed. The structure of 1 is elucidated mainly by COSY and NOESY experiments, and the dynamic character of 1a and 1c is established by temperature‐dependent <sup>1</sup>H‐NMR spectroscopy. The oxidation of the isomer mixture 1a – c with 4,5‐dichloro‐3,6‐dioxocyclohexa‐1,4‐diene‐1,2‐dicarbonitrile (DDQ) gives two isomeric `tetraoxa[30]porphyrin(4.4.4.4)' dications 2′ and 2″ , which are frozen conformers with the same (EZ,EE,EZ,EE)‐configuration and geometrically related to 1c . Semiempirical calculations of 1 and 2 are in full agreement with the experimental results.     

PHOTOCHROMIC SYNERGISM OF BACTERIORHODOPSIN- and HALORHODOPSIN-MEDIATED PHOTOPHOSPHORYLATION IN Halobacterium halobium*

Quantitative action spectroscopy was performed in Halobacterium halobium. using four suited pigment mutants, namely the bacteriorhodopsin and halorhodopsin positive mutant strain M-l (BR⁺, HR⁺), the bacteriorhodopsin positive but halorhodopsin negative strain M-18 (BR⁺, HR^-), the bacteriorhodopsin negative but halorhodopsin positive strain L-33 (BR^-, HR⁺), and the bacteriorhodopsin and halorhodopsin negative strain L-07 (BR^-, HR⁺). The approached questions were: First, photoenergetic synergism of halorhodopsin and bacteriorhodopsin in intact cells; second, photochromism and cellular function of the blue light-absorbing intermediates, i.e. M-412 and HR-410 in bacteriorhodopsin and in halorhodopsin, respectively. Dark-adapted cells of mutant strain M-l show wavelength-dependency of quantum yield of photo-phosphorylation, φ_ATP. An 1.4-fold enhancement was found at 575 nm wavelength where the long wavelength absorbance bands of bacteriorhodopsin and halorhodopsin intersect. The enhancement vanished after a 30 min pulse of orange light (600 Wm^-2 bandpass from 495 to 750 nm), but was restored after a 30 min pulse of blue light (100 Wm^-2 bandpass from 325 to 480 nm). Photoreversibility of this enhancement probably reflects phototransformation of halorhodopsin from its ground state into its inactive intermediate, HR-410, and vice versa. The halorhodopsin-mediated enhancement with maximum quantum yield of photophosphorylation, φ_ATP= 0.06, i.e. a quantum requirement of = 17 photons/ATP, is partly substituted by a rise in phosphate potential and explained in terms of a voltage-regulated gating effect on the H⁺-driven ATP-synthase, superimposed on the chemiosmotic mechanism of energy coupling. The blue-absorbing photochromic intermediate, M-412 of bacteriorhodopsin, dissipates light energy upon photoexcitation that is reflected by a spectral decline in quantum yield of photophosphorylation to a minimum value of = 0.01 at 415 nm, i.e. a quantum requirement of = 100 photons/ATP.