Vibrational spectroscopy as a probe of molecule-based devices

This critical review discusses the applicability of vibrational spectroscopic techniques, specifically Raman and mid-infrared, to the study of molecule-based electronics through a series of examples. We focus on a number of devices currently of interest, such as solar cells, organic light emitting diodes, molecular junctions, switches and transistors. Infrared and Raman spectroscopic techniques and their variations, the main focus of this article, can be used to investigate properties such as crystallinity, multiphasic distributions in three dimensions, as well as lifetimes, structures and energetics of excited-states on ultrashort to very long timescales (210 references).     

Four polyanionic compounds in the K–Au–Ga system: a case study in exploratory synthesis and of the art of structural analysis

The K-Au-Ga system has been investigated at 350 °C for <50 at. % K. The potassium gold gallides K(0.55)Au(2)Ga(2), KAu(3)Ga(2), KAu(2)Ga(4) and the solid solution KAu(x)Ga(3-x) (x = 0-0.33) were synthesized directly from the elements via typical high-temperature reactions, and their crystal structures were determined by single crystal X-ray diffraction: K(0.55)Au(2)Ga(2) (I, I4/mcm, a = 8.860(3) ?, c = 4.834(2) ?, Z = 4), KAu(3)Ga(2) (II, Cmcm, a = 11.078(2) ?, b = 8.486(2) ?, c = 5.569(1) ?, Z = 4), KAu(2)Ga(4) (III, Immm, a = 4.4070(9) ?, b = 7.339(1) ?, c = 8.664(2) ?, Z = 2), KAu(0.33)Ga(2.67) (IV, I-4m2, a = 6.0900(9) ?, c = 15.450(3) ?, Z = 6). The first two compounds contain different kinds of tunnels built of puckered six- (II) or eight-membered (I) ordered Au/Ga rings with completely different cation placements: uniaxial in I and III but in novel 2D-zigzag chains in II. III contains only infinite chains of a potassium-centered 20-vertex polyhedron (K@Au(8)Ga(12)) built of ordered 6-8-6 planar Au/Ga rings. The main structural feature of IV is dodecahedral (Au/Ga)(8) clusters. Tight-binding electronic structure calculations by linear muffin-tin-orbital methods were performed for idealized models of I, II, and III to gain insights into their structure-bonding relationships. Density of states curves reveal metallic character for all compounds, and the overall crystal orbital Hamilton populations are dominated by polar covalent Au-Ga bonds. The relativistic effects of gold lead to formation of bonds of greater population with most post-transition elements or to itself, and these appear to be responsible for a variety of compounds, as in the K-Au-Ga system.     

Conventional and stuffed bergman-type phases in the na-au-T (T = ga, ge, sn) systems: syntheses, structures, coloring of cluster centers, and fermi sphere-brillouin zone interactions

Bergman-type phases in the Na-Au-T (T = Ga, Ge, and Sn) systems were synthesized by solid-state means and structurally characterized by single-crystal X-ray diffraction studies. Two structurally related (1/1) Bergman phases were found in the Na-Au-Ga system: (a) a conventional Bergman-type (CB) structure, Na(26)Au(x)Ga(54-x), which features empty innermost icosahedra, as refined with x = 18.1 (3), Im3?, a = 14.512(2) ?, and Z = 2; (b) a stuffed Bergman-type (SB) structure, Na(26)Au(y)Ga(55-y), which contains Ga-centered innermost icosahedra, as refined with y = 36.0 (1), Im3?, a = 14.597(2) ?, and Z = 2. Although these two subtypes have considerable phase widths along with respective tie lines at Na ≈ 32.5 and 32.1 atom %, they do not merge into a continuous solid solution. Rather, a quasicrystalline phase close to the Au-poor CB phase and an orthorhombic derivative near the Au-rich SB phase lie between them. In contrast, only Au-rich SB phases exist in the Ge and Sn systems, in which the innermost icosahedra are centered by Au rather than Ge or Sn. These were refined for Na(26)Au(40.93(5))Ge(14.07(5)) (Im3?, a = 14.581(2) ?, and Z = 2) and Na(26)Au(39.83(6))Sn(15.17(6)) (Im3?, a = 15.009(2) ?, and Z = 2), respectively. Occupations of the centers of Bergman clusters are rare. Such centering and coloring correlate with the sizes of the neighboring icosahedra, the size ratios between electropositive and electronegative components, and the values of the average valence electron count per atom (e/a). Theoretical calculations revealed that all of these phases are Hume-Rothery phases, with evident pseudogaps in the density of states curves that arise from the interactions between Fermi surface and Brillouin zone boundaries corresponding to a strong diffraction intensity.     

Toward an Iron(II) Spin-Crossover Grafted Phosphazene Polymer

Two new cyclotriphosphazene ligands with pendant 2,2':6',2″-terpyridine (Terpy) moieties, namely, (pentaphenoxy){4-[2,6-bis(2-pyridyl)]pyridoxy}cyclotriphosphazene (L(1)), (pentaphenoxy){4-[2,6-terpyridin-4-yl]phenoxy}cyclotriphosphazene (L(2)), and their respective polymeric analogues, L(1P) and L(2P), were synthesized. These ligands were used to form iron(II) complexes with an Fe(II)Terpy(2) core. Variable-temperature resonance Raman, UV-visible, and M?ssbauer spectroscopies with magnetic measurements aided by density functional theory calculations were used to understand the physical characteristics of the complexes. By a comparison of measurements, the polymers were shown to behave in the same way as the cyclotriphosphazene analogues. The results showed that spin crossover (SCO) can be induced to start at high temperatures by extending the spacer length of the ligand to that in L(2) and L(2P); this combination provides a route to forming a malleable SCO material.     

Ionic liquid mediated routes to polydentate oxygen-donor adducts of cerium(III) bromide

The preparation of a series of CeBr(3) molecular adducts supported by the polydentate oxygen donor ligands diglyme, dimethoxyethane and tetraglyme is reported. The new complexes are characterized structurally by X-ray diffraction and optically by photoluminescence studies.     

Crystal Structure of Dimerized 1,3-Diisopropyl Carbodiimide

Abstract  

A crystal structure of dimerized 1,3-diisopropyl carbodiimide (CDI) has been obtained and its synthesis through a reaction of CDI with aluminum chloride (AlCl₃) has been studied. It possesses space group P2₁/c, with a = 9.352(5), b = 7.956(4), c = 11.405(6) ? and β = 112.465(5)°. It has been observed that this reaction is catalytic with respect to AlCl₃. Kinetic studies of the dimer show that its decomposition into CDI is first order with respect to the dimer. The reactivity of the dimer with metals has been investigated through reactions with methyl lithium and alane. The thermal stability of the dimer has been investigated by thermal gravimetric analysis and differential scanning calorimetry.     

Raman spectroscopy of dipyrrins: nonresonant,resonant and surface‐enhanced cross‐sections and enhancement factors

Detailed studies of the mechanism of surface‐enhanced (resonance) Raman spectroscopy (SE(R)RS), and its applications, place a number of demands on the properties of SERS scatterers. With large Raman cross‐sections, versatile synthetic chemistry and complete lack of fluorescence, free dipyrrins meet these demands but the Raman and SE(R)RS spectroscopy of free dipyrrins is largely unknown. The first study of the Raman spectroscopy of free dipyrrins is therefore presented in this work. The nonresonant Raman, resonant Raman and surface‐enhanced Raman spectra of a typical meso aryl‐substituted‐dipyrrin are reported. Absolute differential cross‐sections are obtained for excitation wavelengths in the near infrared and visible region, in solution phase and for dipyrrin adsorbed on the surface of silver nanoparticles. Raman enhancement factors for SERRS and resonance Raman are calculated from the observed differential cross‐sections. The magnitudes of the resonantly enhanced cross‐sections are similar to those recently reported for strong SERS dyes such as Rhodamine 6G and Crystal Violet. Free dipyrrins offer the advantages of existing SERS dyes but without the drawback of strong fluorescence. Free dipyrrins should therefore find applications in all areas of Raman spectroscopy including fundamental studies of the mechanisms of SERS and bioanalytical and environmental applications. Copyright © 2011 John Wiley & Sons, Ltd.     

ESI-FTICR mass spectrometry employing Data-dependent external ion selection and accumulation

Data-dependent external m/z selection and accumulation of ions is demonstrated in use with ESI-FTICR instrumentation, with two different methods for ion selection being explored. One method uses RF/DC quadrupole filtering and is described in use with an 11.5 tesla (T) FTICR instrument, while the second method employs RF-only resonance dipolar excitation selection and is described in use with a 3.5 T FTICR instrument. In both methods ions are data-dependently selected on the fly in a linear quadrupole ion guide, then accumulated in a second linear RF-only quadrupole trap that immediately follows. A major benefit of ion preselection prior to external accumulation is the enhancement of ion populations for low-level species. This development is expected to expand the dynamic range and sensitivity of FTICR for applications including analysis of complex polypeptide mixtures (e.g., proteomics).     

Detection of transthyretin variants using immunoprecipitation and matrix-assisted laser desorption/ionization bioreactive probes: A clinical application of mass spectrometry

In our continuing efforts to develop mass spectrometry-based methods for transthyretin (TTR) variant detection and characterization, we have sought to use matrix-assisted laser desorption/ionization (MALDI) bioreactive probes incorporating immobilized trypsin for screening purposes. These devices show good diagnostic potential as a clinical screening tool to detect amino acid substitutions in TTR. MALDI probes allow the on-probe generation of tryptic digests. The subsequent mass analysis of the on-probe digest yields the peptide map. The inherent advantages of this method include considerably reduced digestion times (minutes vs. hours), absence of autolysis products, minimized sample handling, and hence minimal sample loss. A further advantage is that the opportunity for loss of hydrophobic peptides is reduced because no sample transfer occurs. The method can be applied as a preliminary screen for TTR variants where TTR is isolated from patient serum through immunoprecipitation. This method should also be applicable to other proteins and suitable for automation.     

Proton affinities of saturated aliphatic methyl esters

The kinetic method was used to determine the proton affinities of methyl esters of several saturated fatty acids. Decompositions of the proton-bound dimers of the methyl esters, AHB⁺, were observed under different conditions with two instruments. The proton affinities (PAs) of the methyl esters increase continually with increasing carbon number in the acid. Equilibrium and initial rate experiments were performed with a Fourier transform ion cyclotron resonance mass spectrometer on the methyl ester of the C₂₂ saturated acid (methyl behenate). These experiments give values for PA (methyl behenate) that are perhaps slightly lower than those obtained with the kinetic method. The PAs of the methyl esters of the fatty acids could be correlated with the equation: PA (ester) = (40.0 ± 2.5)*log(n) + (784.7 ± 3.9) kJ/mol or PA (ester) = (864 ± 2) − (479 ± 41)/n, wheren = number of atoms in the molecule. Proton affinities of smaller sets of 1-alkylamines and 1-alkanols can be fit to similar equations.