Theoretical study on the mechanism and kinetics of addition of hydroxyl radicals to fluorobenzene

Geometries, frequencies, reaction barriers, and reaction rates were calculated for the addition of OH radical to fluorobenzene using Möller–Plesset second‐order perturbation (MP2) and G3 methods. Four stationary points were found along each reaction path: reactants, prereaction complex, transition state, and product. A potential for association of OH radical and fluorobenzene into prereaction complex was calculated, and the associated transition state was determined for the first time. G3 calculations give higher reaction barriers than MP2, but also a significantly deeper prereaction complex minimum. The rate constants, calculated with Rice–Ramsperger–Kassel–Marcus (RRKM) theory using G3 energies, are much faster and in much better agreement with the experiment than those calculated with MP2 method, as the deeper well favors the formation of prereaction complex and also increases the final relative populations of adducts. The discrepancies between the experimental and calculated rate constants are attributed to the errors in calculated frequencies as well as to the overestimated G3 reaction barriers and underestimated prereaction complex well depth. It was possible to rectify those errors and to reproduce the experimental reaction rates in the temperature range 230–310 K by treating the relative translation of OH radical and fluorobenzene as a two‐dimensional particle‐in‐the‐box approximation and by downshifting the prereaction complex well and reaction barriers by 0.7 kcal mol^?1. The isomeric distribution of fluorohydroxycyclohexadienyl radicals is calculated from the reaction rates to be 30.9% ortho, 22.6% meta, 38.4% para, and 8.3% ipso. These results are in agreement with experiment that also shows dominance of ortho and para channels. © 2012 Wiley Periodicals, Inc.     

Inclusion complexes with cyclodextrin and usnic acid

Molecular inclusion complexes of usnic acid (UA) with β-cyclodextrin (β-CD) and 2-hydroxypropyl β-cyclodextrin (HP β-CD) were prepared by the co-precipitation method in the solid state in the molar ratio of 1:1. Structural complexes characterization was based on different methods, FTIR, ¹H NMR, XRD and DSC. Parallel to the complex by the above methods, corresponding physical mixtures of UA with cyclodextrins and complexing agents (β-CD, HP β-CD and UA) were analyzed. The results of DSC analysis showed that, at around 200 °C, the endothermal peak in the complexes with cyclodextrins originating from the UA melting has disappeared. Complex diffractogram patterns do not contain peaks characteristic for the pure UA. They are more appropriate to cyclodextrin diffractogram. This fact points to the molecular encapsulation of UA in the cyclodextrin cavity. Chemical shifts in ¹H NMR spectra after the inclusion of UA into the cyclodextrin cavity, especially H-3 protons (0.0012 and 0.0102 ppm in the β-CD and HP β-CD, respectively) and H-5 and H-6 (0.0134 ppm) and hydrogen from CH₃ (0.0073 ppm) HP β-CD also points to the formation of molecular inclusion complexes. The improved solubility of UA in water was achieved by molecular incapsulation. In the complex with β-CD the solubility is 0.3 mg/cm³, with HP β-CD 4.2 mg/cm³ while the uncomplexed UA solubility is 0.06 mg/cm³. The microbial activity of UA and both complexes was tested against eight bacteria and two fungi and during the test no reduced activity of UA in the complexes was observed.     

Inactivation of cholinesterases by silver and gold ions in vitro

The main goal of the present study was to investigate the effects of silver and gold ions on cholinesterases (ChEs) activity due to increasing application of these metals in a wide variety of nanomaterials. A chromogenic assay using the substrate o-nitrophenyl acetate/butyrate made it possible to conclude unmistakably that both metals inhibit ChEs. Addition of bovine serum albumin (BSA) indicates that binding of metal ions to albumin could serve to scavenge metals and consequently reduce their amount for reaction with ChEs. The effects of metal ions on ChE should be taken into consideration when using this enzyme as an environmental biomarker.      

(E)‐4‐[(2‐Carbamoylhydrazinylidene)methyl]‐3‐hydroxy‐5‐hydroxymethyl‐2‐methylpyridin‐1‐ium nitrate

The title compound, C₉H₁₃N₄O₃⁺·NO₃⁻, is the first structurally characterized Schiff base derived from semicarbazide and pyridoxal. Unusually for an unsubstituted semicarbazone, the compound adopts a syn conformation, in which the carbonyl O atom is in a cis disposition relative to the azomethine N atom. This arrangement is supported by a pair of hydrogen bonds between the organic cation and the nitrate anion. The cation is essentially planar, with only a hydroxymethyl O atom deviating significantly from the mean plane of the remaining atoms (r.m.s. deviation of the remaining non‐H atoms = 0.01 Å). The molecules are linked into flat layers by N—H...O and C—H...O hydrogen bonds. O—H...O hydrogen bonds involving the hydroxymethyl group as a donor interconnect the layers into a three‐dimensional structure.     

Influence of flexible spacers on liquid-crystalline self-assembly of T-shaped bolaamphiphiles

T-shaped bolaamphiphiles composed of a biphenyl rigid core, a semiperfluorinated lateral chain, two polar 1,2-diol groups in the terminal positions and flexible alkyl spacers connecting the polar groups with the biphenyl core have been synthesized and investigated by polarizing microscopy, DSC and X-ray scattering. The influence of spacer length and position of the spacer on the self-assembly in liquid-crystalline phases was studied. A series of four different columnar phases (Col(hex)/p6mm, Col(rec)/p2gg, Col(squ)/p4gm and Col(squ)/p4mm), representing liquid-crystalline honeycomb structures composed of cylinders having hexagonal, pentagonal, and square cross section, were found on increasing the spacer length. It is also shown that introduction of aliphatic spacers in the backbone of the T-shaped bolaamphiphiles replaces the Col(rec)/c2mm phase made up of rhombic cylinders with the Col(squ)/p4mm phase composed of square cylinders. It also causes the 2d lattice of pentagonal cylinders to increase the symmetry from Col(rec)/p2gg to Col(squ)/p4gm. A temperature-dependent second-order phase transition between these two pentagonal cylinder structures was observed for the first time. Beside these effects on cylinder shape and phase symmetry the flexible spacer units also lead to reduced phase transition temperatures and allow adjustment of cylinder side length to envelop a wider range of side-chain sizes. Electron density maps suggest that this may involve sacrificing some of the hydrogen bonds.     

Transition metal complexes with thiosemicarbazide‐based ligands. XLIV. Aqua(3‐hydroxy‐5‐hydroxymethyl‐2‐methylpyridine‐4‐carboxaldehyde 3‐­methylisothiosemicarbazone‐κ3O,N1,N4)nitratocopper(II) nitrate

The title complex, [Cu(NO₃)(C₁₀H₁₄N₄O₂S)(H₂O)](NO₃), is the first metal complex with a Schiff base derived from iso­thio­semicarbazide and pyridoxal (pyridoxal is 3‐hydroxy‐5‐­hydroxy­methyl‐2‐methyl­pyridine‐4‐carbox­aldehyde). The Cu^II environment is a square pyramid, the equatorial plane of which is formed by the tridentate ONN‐coordinated iso­thio­semicarbazone and one water mol­ecule, while the nitrate ligand is in the apical position. The existence of numerous strong intermolecular hydrogen bonds, and weak C—H?O and C—H?π interactions, leads to a three‐dimensional supramolecular structure.